CmoCh03G001980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G001980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	GrpE protein homolog
Location	Cmo_Chr03 : 3277998 .. 3281308 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAACCTTTCTCGAACGTCCTACTTTCTTCCTCTCCTCCTTACCCTTATCTCTCTCTTTCCTCTGTAAATTCTCTCATGGCGACGGTTCTCAGAACTCCATTTTTTCAGGCAACTCCTCCGGCAACTGTATCCACGATTTCCTCATCCAAATCCACCCTTAAACCCTTATCTGTATCCTTTAGAACCTCTCACGCTACCATTTCTTGCATCAATTCCTCCAAGTTTTCACTTCGTCCTCGTTCTCTCCGGTTCCCGAAGCTCGCCTCGTTTTCTTCCTCCGGTGAAACGGAAATTAGCGAGGTCGAAGAGGAAGTTCGTGAATCTGAGGCTGAGGTACACTTAATTCTTCTTCTTATTTGGGGCTATTTTACCGTTTGGTTGCTGTAGCTTTACCGGACTATTGTAGTTTGACTCTTTAGTTGATTAGGTTGGATAGTGTTGGAGGATATTGTTTTATGCAGAGGAGTTTCTAGGATCGCGTTGTTATGTCTAATATTATCAATTAGTGCGAATTTGCCTCTTGGATTGCTGTTACGAAACAGTTTTGTAAGAGGAAATGCGGCATTCTGGCATTATCTTCAATTCATTGTCTATTTCTGTGTTCTAATTATTCTACTGAATTATCTATGAAGTAAGACATTTGATTCTCAAATCTCACCTTGAATTTATCCACTTGACATTTCGAATTTTTGTATTAACTAAAAAAATTGAGAATGGAAGCAGTTTTCGTAGTTTTGGGGCCATTATTCGAGTTTGGTCTAATCATTCCTCTATGTTCTATGCAGCTTTTTGGATACTACAATAATATAATCAAATGATGGAACCATAAGCTCCATTCAATTCAAGACTAAAATTTAGGTTTGTTGAAATGAAACATGGTCCATGAAGCCTAAACTATGCTCTTTTAAACCTGCAAGTATGGACTATTGATTTTGTTTTTTAAAATTTGAAGATTTTCGATATTGGATGCTTAGAGAGTGTAATAACTTCTGACTATGAGAAATGAATTCACACAGCACGGGTTTCAATTGTTTTAATTAAGTTTATACTAAAATCATGTCCTTGTGCTTTCTTGTTGCTCATGTATTTATGTAACAGGACTCTTCTGTTAGTTATACTGGTGTGGAAGATGCTGCAAGTGATAGTGATATAACTGATGATGCAGAAGTTAATGCTGAGGATGTGGCTCAGTCAGTTATTATATCAGCACTTCAATCCTATAAGCAGGCTTTAGCAGATAACAATGGAGCTCAAATAGTTGAAATAGAGTCATATCTGAAGTCGATCGAAGATGAAAAGCTCGCAGTTGAAAGGAAGTTGGAATCCCTAACTGAAGAACTCTCTGTAGAGAAGGTTCGAATTTTGCGGATCAGTGCCGACTTTGATAATTTTAGGAAGAGAACAGAGCGAGAACGTCTTTCATTGGTAAAAAATGCTCAAGGGGAAGTGGTAGAGACGTTATTGGGTGTCCTGGATAATTTTGAGAGAGCTAGGGCACAGATCAAGGTGGAGACAGAGGGAGAAGAAAAGATCAATCAGAGTTACCAAAGCATCTATAAGCAGTTCACTGAGATTTTGGGCTCATTGGGTGTAGTTCCTGTTGAGACAATTGGGAAACCTTTTGACCCACTGGTGAGTTCTTGCTTCTTGTCATCTTATTGAATTTGCATTTCATGTACCTCTCATTTTCCCTTTATTCATCAAAGTTAAGTGACTATTAATCAGTCAGTGGTGCTAATAACTGATGAACTTGTTTTCTAAATCAAATTGTTTAAATTGTTTTGTTCTTAGAGTACCTGCACATGACGGATTTATTCAAGCAACTTGCTGAGTAAAATGGTGGTATTTAGTTAATACCAACTCTAGAAACTAGGAAAGTGTAGGGTCTTTCCTTGCAAACATTACAATCATTACTGGATGATCTTTTCCTGAAATCTGATTTTTGAATCTCAAATATGAATATGAATTGAACCGACCTGTTGGGATTCATTTATTTTTGTAGATTTTGACCATAGGAAAACTAAGAATTGTGATCTTTTGCTCTCATTTTTGTTTTGCACTGATAATGATGAGAGGATAAATCATAATTTATTTCATAGTGTTCATTGCAAAAAACTATGTGATGTAAATTATATTTGGTGTTCCCTGGATCCATCCATAAGAAGTGATGCATCTTATAATGGGTTATTTTTTATGGAAAAGGATCAAAGAAGAGAAAGTTACTTTGGAAGTGTGCTATCTTGGATCCGTTATCGGTTTTATGGTTGGAGATCGATAAAAGAATTATTGAAGATAAATTTGAAGATCTAGACCAGGTTCAGAGTGAATCTGATAGTGTACATTGTTGGAGCAAAAAGGTAGAAGACTTTACTAGTTGTACCTCTCAGGCTATTTGTTCAAAAGGTGATTTTTTGTCGGTAAATTTATGCTTCAAGGAGGCCTCGTCCTCCTGTAATATTGTAACTTATTCAAATTGTTATTATCAATGACAAGGCTACTATTTCTGTCTGATATATTGTGATTTTTCGACTACCTTCTATCACATTGAATTCTGAGGTGATTTGTTTTTCTTTTCTGAAATCTACTCGATTTGCATTCTAAACTAGCATGACATGATCAAACATGGAACTAATCAGGGTTCTGCTGTTTAATCTCTCTCTTTTTGGGGATCGAGTTTGGTAAGTTGAAACTTCTTTAATCAATTTCTTGCTACAGCTTCATGAAGCAATTATGAGGGAGGACTCCGCAGAGTTTGAGGAAGGCATCATACTCGACGAGTTCCGCAAAGGATTCTTGCTTGGTGAGAGACTCCTGCGTCCATCAATGGTGAAAGTATCAGCCGGTCCAGGGCCTGAAAAGTCGGATGAAGCAGCAGCATCAGAAGAACATGATTCGAGTGAAAACTCGGAGGGCTCCGAATCGGAGTCTTCTTAAAACTCGAATGAACACAATCCAATTTTGAATATAGTTTTTGAATCTTCTTTGTGGGTGATAAGAGATTGGAGATGGAGTTTATTGTTGTTCTTGGTTATCAGGCTTTTGCAGGCGGAGAATTTAGATATCTGTTCTCAGGGGAAGGAAGTGTTGTAGTTGATTTAGATATTTCTTGCTATAAGTTGTAGAAATGGTTGAATGTGCCTTGATTTCTGAGGCCAAAATGGCATGCCAGGTCTCCTCTGTAGGACCATATTTATTTGAAGGAAATTGAAACCACTCTCTCTTTCATTGTTATTTCTGTTCATTATATTAACTTACGAACTTCTGTTAGGGAATGGATGGACCGAAGAATTGTTTCCAATGTAGGTTGACC

mRNA sequence

CAAACCTTTCTCGAACGTCCTACTTTCTTCCTCTCCTCCTTACCCTTATCTCTCTCTTTCCTCTGTAAATTCTCTCATGGCGACGGTTCTCAGAACTCCATTTTTTCAGGCAACTCCTCCGGCAACTGTATCCACGATTTCCTCATCCAAATCCACCCTTAAACCCTTATCTGTATCCTTTAGAACCTCTCACGCTACCATTTCTTGCATCAATTCCTCCAAGTTTTCACTTCGTCCTCGTTCTCTCCGGTTCCCGAAGCTCGCCTCGTTTTCTTCCTCCGGTGAAACGGAAATTAGCGAGGTCGAAGAGGAAGTTCGTGAATCTGAGGCTGAGGACTCTTCTGTTAGTTATACTGGTGTGGAAGATGCTGCAAGTGATAGTGATATAACTGATGATGCAGAAGTTAATGCTGAGGATGTGGCTCAGTCAGTTATTATATCAGCACTTCAATCCTATAAGCAGGCTTTAGCAGATAACAATGGAGCTCAAATAGTTGAAATAGAGTCATATCTGAAGTCGATCGAAGATGAAAAGCTCGCAGTTGAAAGGAAGTTGGAATCCCTAACTGAAGAACTCTCTGTAGAGAAGGTTCGAATTTTGCGGATCAGTGCCGACTTTGATAATTTTAGGAAGAGAACAGAGCGAGAACGTCTTTCATTGGTAAAAAATGCTCAAGGGGAAGTGGTAGAGACGTTATTGGGTGTCCTGGATAATTTTGAGAGAGCTAGGGCACAGATCAAGGTGGAGACAGAGGGAGAAGAAAAGATCAATCAGAGTTACCAAAGCATCTATAAGCAGTTCACTGAGATTTTGGGCTCATTGGGTGTAGTTCCTGTTGAGACAATTGGGAAACCTTTTGACCCACTGCTTCATGAAGCAATTATGAGGGAGGACTCCGCAGAGTTTGAGGAAGGCATCATACTCGACGAGTTCCGCAAAGGATTCTTGCTTGGTGAGAGACTCCTGCGTCCATCAATGGTGAAAGTATCAGCCGGTCCAGGGCCTGAAAAGTCGGATGAAGCAGCAGCATCAGAAGAACATGATTCGAGTGAAAACTCGGAGGGCTCCGAATCGGAGTCTTCTTAAAACTCGAATGAACACAATCCAATTTTGAATATAGTTTTTGAATCTTCTTTGTGGGTGATAAGAGATTGGAGATGGAGTTTATTGTTGTTCTTGGTTATCAGGCTTTTGCAGGCGGAGAATTTAGATATCTGTTCTCAGGGGAAGGAAGTGTTGTAGTTGATTTAGATATTTCTTGCTATAAGTTGTAGAAATGGTTGAATGTGCCTTGATTTCTGAGGCCAAAATGGCATGCCAGGTCTCCTCTGTAGGACCATATTTATTTGAAGGAAATTGAAACCACTCTCTCTTTCATTGTTATTTCTGTTCATTATATTAACTTACGAACTTCTGTTAGGGAATGGATGGACCGAAGAATTGTTTCCAATGTAGGTTGACC

Coding sequence (CDS)

ATGGCGACGGTTCTCAGAACTCCATTTTTTCAGGCAACTCCTCCGGCAACTGTATCCACGATTTCCTCATCCAAATCCACCCTTAAACCCTTATCTGTATCCTTTAGAACCTCTCACGCTACCATTTCTTGCATCAATTCCTCCAAGTTTTCACTTCGTCCTCGTTCTCTCCGGTTCCCGAAGCTCGCCTCGTTTTCTTCCTCCGGTGAAACGGAAATTAGCGAGGTCGAAGAGGAAGTTCGTGAATCTGAGGCTGAGGACTCTTCTGTTAGTTATACTGGTGTGGAAGATGCTGCAAGTGATAGTGATATAACTGATGATGCAGAAGTTAATGCTGAGGATGTGGCTCAGTCAGTTATTATATCAGCACTTCAATCCTATAAGCAGGCTTTAGCAGATAACAATGGAGCTCAAATAGTTGAAATAGAGTCATATCTGAAGTCGATCGAAGATGAAAAGCTCGCAGTTGAAAGGAAGTTGGAATCCCTAACTGAAGAACTCTCTGTAGAGAAGGTTCGAATTTTGCGGATCAGTGCCGACTTTGATAATTTTAGGAAGAGAACAGAGCGAGAACGTCTTTCATTGGTAAAAAATGCTCAAGGGGAAGTGGTAGAGACGTTATTGGGTGTCCTGGATAATTTTGAGAGAGCTAGGGCACAGATCAAGGTGGAGACAGAGGGAGAAGAAAAGATCAATCAGAGTTACCAAAGCATCTATAAGCAGTTCACTGAGATTTTGGGCTCATTGGGTGTAGTTCCTGTTGAGACAATTGGGAAACCTTTTGACCCACTGCTTCATGAAGCAATTATGAGGGAGGACTCCGCAGAGTTTGAGGAAGGCATCATACTCGACGAGTTCCGCAAAGGATTCTTGCTTGGTGAGAGACTCCTGCGTCCATCAATGGTGAAAGTATCAGCCGGTCCAGGGCCTGAAAAGTCGGATGAAGCAGCAGCATCAGAAGAACATGATTCGAGTGAAAACTCGGAGGGCTCCGAATCGGAGTCTTCTTAA

Homology

[Close]

BLAST of CmoCh03G001980 vs. Swiss-Prot
Match: GRPE_SYNY3 (Protein GrpE OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=grpE PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-32
Identity = 71/166 (42.77%), Postives = 109/166 (65.66%), Query Frame = 1


Query: 143 ESYLKSIEDEKLAVERKLESLTEELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGE 202
           E  +  ++ +  +  ++L   +E+L   K R + ++A+FDNFRKRT+RE+    K  +G 
Sbjct: 69  EEIIAILQKDLASHRQELAEQSEQLDSIKKRYVALAAEFDNFRKRTQREKEEQAKLIKGR 128

Query: 203 VVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFD 262
            +  LL V+DNFERAR QIK  ++GE +I++SYQ +YK   + L  LGV P+   GKPFD
Sbjct: 129 TITELLPVVDNFERARTQIKPNSDGENQIHKSYQGVYKNLVDSLKGLGVAPMRPEGKPFD 188

Query: 263 PLLHEAIMREDSAEFEEGIILDEFRKGFLLGERLLRPSMVKVSAGP 309
           P  HEA++RE +AE+ E  +++E  +G+LL + +LR SMVKV+  P
Sbjct: 189 PKYHEAMLREPTAEYPEDTVIEELVRGYLLDDIVLRHSMVKVAVAP 234

[Close]

BLAST of CmoCh03G001980 vs. Swiss-Prot
Match: GRPE_CYAP7 (Protein GrpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 9.2e-32
Identity = 72/174 (41.38%), Postives = 116/174 (66.67%), Query Frame = 1


Query: 147 KSIEDEKLAVERKLESLTEELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGEVVET 206
           +S+     +++ +LE   +++   K R + ++A+FDNFRKRT RE+  L K A+ + +  
Sbjct: 103 ESLLQTNQSLKDQLEEQNQQIDAAKRRYIGLAAEFDNFRKRTLREKEELEKQAKRKTLSE 162

Query: 207 LLGVLDNFERARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLH 266
           LL V+DNFERAR QIK   EGE +I++SYQ +YK   + L  LGV  +   G+PFDP+ H
Sbjct: 163 LLTVVDNFERARLQIKPSNEGEGEIHKSYQGVYKNLVDSLKRLGVSAMRAEGEPFDPMYH 222

Query: 267 EAIMREDSAEFEEGIILDEFRKGFLLGERLLRPSMVKVSAGPGPEKSDEAAASE 321
           EA++RE + +F EG ++++  +G+LL +++LR +MVKV+A   P+ S+  + SE
Sbjct: 223 EAMLREPTNDFPEGTVIEQLVRGYLLDDQVLRHAMVKVAAPKEPDSSETESTSE 276

[Close]

BLAST of CmoCh03G001980 vs. Swiss-Prot
Match: GRPE_SYNPX (Protein GrpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 70/170 (41.18%), Postives = 113/170 (66.47%), Query Frame = 1


Query: 156 VERKLESLTEELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFE 215
           +E +L++L +E    + + +RI+ADFDNFRKR  R++  + +      +  +L V+DNFE
Sbjct: 49  LEHELQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQEDIRQQLVCSTLSEILPVVDNFE 108

Query: 216 RARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSA 275
           RAR Q+  E+E  + +++SYQ +YKQ  ++L   GV  +E +G+ FDP LHEA++RE+S 
Sbjct: 109 RARQQLNPESEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQLFDPTLHEAVLREEST 168

Query: 276 EFEEGIILDEFRKGFLLGERLLRPSMVKVSAGPGPEKSDEAAASEEHDSS 326
           E  E ++++E ++G+ L  ++LR ++VKVS GPGP    E AAS E + S
Sbjct: 169 EQPEDVVIEELQRGYHLNGKVLRHALVKVSMGPGPSADAEGAASAEAEDS 218

[Close]

BLAST of CmoCh03G001980 vs. Swiss-Prot
Match: GRPE_SYNS9 (Protein GrpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.6e-31
Identity = 71/168 (42.26%), Postives = 111/168 (66.07%), Query Frame = 1


Query: 156 VERKLESLTEELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFE 215
           +E++L SL +E    + + +RI+ADFDNFRKR  R++  L +      +  +L V+DNFE
Sbjct: 54  LEQELNSLKQEHEAVQSQYMRIAADFDNFRKRQARDQDDLRQQLVCSTLTEILPVVDNFE 113

Query: 216 RARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSA 275
           RAR Q+  E E  + +++SYQ +YKQ  ++L   GV  +E +G+ FDP LHEA++RE++ 
Sbjct: 114 RARQQLNPEGEEAQALHRSYQGLYKQLVDVLKQQGVARMEVVGQEFDPTLHEAVLREENQ 173

Query: 276 EFEEGIILDEFRKGFLLGERLLRPSMVKVSAGPGPEKSDEAAASEEHD 324
           E  E I+ +E ++G+    R+LR +MVKVS GPGPE S +AA+ +  +
Sbjct: 174 EHAEDIVCEELQRGYHRDGRVLRHAMVKVSMGPGPESSSDAASEQPQE 221

[Close]

BLAST of CmoCh03G001980 vs. Swiss-Prot
Match: GRPE_PROM0 (Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-31
Identity = 74/178 (41.57%), Postives = 115/178 (64.61%), Query Frame = 1


Query: 157 ERKLESLTEELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFER 216
           + +LE L +E    K + +RISADFDNFRKR  R++  L      + +  +L ++DNFER
Sbjct: 60  DARLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQDDLKIQLVSKTLTAILPIVDNFER 119

Query: 217 ARAQIKVETEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAE 276
           AR Q+K E+E  + +++SYQ +YKQ  E+L   GV P+  +G+ FDP LHEA++RE S E
Sbjct: 120 ARQQLKPESEEAQALHRSYQGLYKQLVEVLKQQGVSPMRVVGQQFDPNLHEAVLREPSEE 179

Query: 277 FEEGIILDEFRKGFLLGERLLRPSMVKVSAGPGPEKSDEAAASEEHDSSENSEGSESE 335
           FEE  I++E ++G+ L  ++LR ++ KVS GPG +KS +    +  +   +S+ + SE
Sbjct: 180 FEEDFIIEELQRGYHLEGKVLRHALAKVSMGPGKQKSQQEVEKDTVEGDVDSDANTSE 237

[Close]

BLAST of CmoCh03G001980 vs. TrEMBL
Match: A0A0A0L229_CUCSA (GrpE protein homolog OS=Cucumis sativus GN=Csa_4G417510 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 2.0e-142
Identity = 290/336 (86.31%), Postives = 308/336 (91.67%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCINSSKFSLRPRSLRFP 60
           MAT+LRTPFFQATPPA+VS  S SKSTLKP S+SF TSH+ I C NSSKFS RP SLRFP
Sbjct: 1   MATLLRTPFFQATPPASVSAFSLSKSTLKPSSLSFTTSHSFICCFNSSKFSTRPPSLRFP 60

Query: 61  KLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAEDVAQSVI 120
           K   F+SSGETEISE+EEEVR+SEAEDSSVSYTGVEDA SD+DI+DD+EVN ED  QSVI
Sbjct: 61  K-RPFASSGETEISELEEEVRDSEAEDSSVSYTGVEDATSDNDISDDSEVNTEDSTQSVI 120

Query: 121 ISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVRILRISAD 180
           I+ALQSYKQALADN+GAQ+VEIES+LKSIEDEKLAVERKL SL EELSVEK R+LRISAD
Sbjct: 121 IAALQSYKQALADNDGAQMVEIESFLKSIEDEKLAVERKLSSLIEELSVEKDRVLRISAD 180

Query: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240
           FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK
Sbjct: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240

Query: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLGERLLRPS 300
           QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDS EFEEGIILDEFRKGFLLG+RLLRPS
Sbjct: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSTEFEEGIILDEFRKGFLLGDRLLRPS 300

Query: 301 MVKVSAGPGPEKSDEAAASEEHDSSENSEGSESESS 337
           MVKVSAGPGPEKSDE A +E+ DSSE    SESESS
Sbjct: 301 MVKVSAGPGPEKSDETAPAEKLDSSEEFANSESESS 335

[Close]

BLAST of CmoCh03G001980 vs. TrEMBL
Match: B9I664_POPTR (GrpE protein homolog OS=Populus trichocarpa GN=POPTR_0013s06430g PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 4.0e-90
Identity = 209/343 (60.93%), Postives = 249/343 (72.59%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCI-------NSSKFSLR 60
           MATV++TP F A  P  ++  S S     PL +SF  SH     I       NS +F  +
Sbjct: 1   MATVIKTPPFSA--PRIINNSSISLKYANPLCLSF--SHNNNRSIPNFSLAKNSLRFPTK 60

Query: 61  PRSLRFPKLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAE 120
           P SLRF K   FSS GETE +E EE ++E E EDSS     VEDAAS  ++    EV   
Sbjct: 61  P-SLRFVKFVPFSSQGETETTETEETIQEPEIEDSSDGAVEVEDAASSEEVASSEEVADA 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
           +   SV++++L+SYK+ALA N+ + I EIE++LKS+EDEK+  ERK+ SLTEELS+EK R
Sbjct: 121 EDTSSVVMASLRSYKEALASNDESIIAEIEAFLKSVEDEKIDNERKVASLTEELSIEKER 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           +LRISADFDNFRKRTERERLSLV NAQGEVVE LL VLDNFERA+ QIK  TEGEEKIN 
Sbjct: 181 VLRISADFDNFRKRTERERLSLVTNAQGEVVENLLSVLDNFERAKTQIKTATEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQ+IYKQF EIL SLGVVPVETIGKPFDP+LHEAIMREDS  FEEG +L+E+RKGF LG
Sbjct: 241 SYQNIYKQFMEILVSLGVVPVETIGKPFDPMLHEAIMREDSDAFEEGTVLEEYRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEKSDEAAASEE--HDSSENSEGSESE 335
           +RLLRPSMVKVSAGPGP K ++   S+E    +S  SEG  +E
Sbjct: 301 DRLLRPSMVKVSAGPGPVKPEQVEESQEEAEATSGTSEGGSTE 338

[Close]

BLAST of CmoCh03G001980 vs. TrEMBL
Match: M5VQG4_PRUPE (GrpE protein homolog OS=Prunus persica GN=PRUPE_ppa008162mg PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 5.2e-90
Identity = 218/346 (63.01%), Postives = 261/346 (75.43%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHA---TISCINSSKFSLRPRSL 60
           MA VLRT    AT     ST+S +    KP  VSFR S +       ++S +F   P SL
Sbjct: 1   MANVLRTSPLGATFAQLPSTLSPNSP--KPSYVSFRQSQSGSIPYLTLSSLRFPHLP-SL 60

Query: 61  RFPKLASFSSSGETEISEVEEEVRE-SEAEDSSVSYTGVEDAASD---SDITDDAEVNAE 120
           RF K    +S GETE +E  EEVR+  E EDSS     VED+ SD   S  ++D E +AE
Sbjct: 61  RFAKFVPLASQGETETTETVEEVRQPEEIEDSSDGAVSVEDSTSDGEESGTSNDDEGDAE 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
           +   S II++LQ YK+ALA N+ +++ EIES+LK IEDEK+++E+K+ SL+EELS EKVR
Sbjct: 121 EKPVSAIIASLQLYKEALASNDESKVAEIESFLKYIEDEKISLEKKVASLSEELSAEKVR 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           ILRISADF+NFRKRT+RER+SLV NAQGEVVE+LL V+DNFERA+ QIKVETEGEEKIN 
Sbjct: 181 ILRISADFENFRKRTDRERISLVTNAQGEVVESLLPVVDNFERAKTQIKVETEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQSIYKQF EIL SLGVVPVET+GKPFDPLLHEAIMREDS EFEEG+I+DEFRKGF LG
Sbjct: 241 SYQSIYKQFGEILSSLGVVPVETVGKPFDPLLHEAIMREDSTEFEEGVIIDEFRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEKSD-EAAASEEHDSSENS-EGS-ESESS 337
           +RLLRPSMVKVSAGPGP K D +   SEE D+SE + EGS E+ES+
Sbjct: 301 DRLLRPSMVKVSAGPGPAKPDQQVPPSEEQDASETTKEGSTETESA 343

[Close]

BLAST of CmoCh03G001980 vs. TrEMBL
Match: A0A067L6A9_JATCU (GrpE protein homolog OS=Jatropha curcas GN=JCGZ_02644 PE=3 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 6.8e-90
Identity = 207/341 (60.70%), Postives = 260/341 (76.25%), Query Frame = 1


Query: 1   MATVLRTPFFQA-TPPATVSTISSSKSTLKP----LSVSFRTSHATISCINSSKFSLRPR 60
           MATVL+TP  +A  PP  ++T +++ S   P    LS   R+    +S  +  +F ++  
Sbjct: 1   MATVLKTPPLRAQVPPRLITTATNNLSLQSPNPFCLSFRRRSISTEVSRTSCLRFPVKS- 60

Query: 61  SLRFPKLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASD-SDITDDAEVNAED 120
           S RF K   F++ GETE +E EE ++E E +DSS    GVE +A +  D +   E +   
Sbjct: 61  SHRFIKFVPFATQGETETTETEETIQEPEIQDSSDGAVGVEGSADELEDSSSSEEADDTK 120

Query: 121 VAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVRI 180
            A SVI+++LQSYK+ALA N+ ++IVEIE++LKS+EDEK+ +E+K+ SL+++LS EK RI
Sbjct: 121 EAPSVILASLQSYKEALASNDESKIVEIEAFLKSVEDEKINLEQKVVSLSQDLSTEKDRI 180

Query: 181 LRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQS 240
           LRISADFDNFRKRTERERLSL+ NAQGEVVE+LL VLDNFERA++QIK+ETEGEEKIN S
Sbjct: 181 LRISADFDNFRKRTERERLSLLTNAQGEVVESLLPVLDNFERAKSQIKLETEGEEKINNS 240

Query: 241 YQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLGE 300
           YQSIYKQF EILGSLGVVPVETIGKPFDPLL EAIMREDS EFEEGIILDEFRKGF LG+
Sbjct: 241 YQSIYKQFVEILGSLGVVPVETIGKPFDPLLQEAIMREDSTEFEEGIILDEFRKGFKLGD 300

Query: 301 RLLRPSMVKVSAGPGPEKSDEAAA-SEEHDSSENSEGSESE 335
           RLLRP+MVKVSAGPGP K++EA +  E   +SE +E S +E
Sbjct: 301 RLLRPAMVKVSAGPGPAKAEEAGSPGEAETASETNEESAAE 340

[Close]

BLAST of CmoCh03G001980 vs. TrEMBL
Match: A0A067DUF0_CITSI (GrpE protein homolog OS=Citrus sinensis GN=CISIN_1g019043mg PE=3 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 3.7e-88
Identity = 210/350 (60.00%), Postives = 255/350 (72.86%), Query Frame = 1


Query: 1   MATVLRTPFFQATP-PATVSTISSSKSTLKPLSVSFRTSHATISCINSSKFSLR---PRS 60
           MATV++TP F A+  PAT +   S KS  KP+ +SFR    + S +     SLR    +S
Sbjct: 1   MATVIKTPPFHASSLPATRAAPISLKSP-KPICLSFRQRLISTSRLYHRSNSLRFVSVQS 60

Query: 61  LRFPKLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDIT---DDAEVNAE 120
           LRF K +  +S+GETE +E +EE++E + E+SS    G+ED  SD D +    D   +AE
Sbjct: 61  LRFIKFSPLASTGETETTETQEEIQEPQIEESSDGAVGIEDGTSDDDSSGAASDDTSDAE 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
           +   S I+  LQSYK+ALA N+  +  EIE+ LKS EDEK+ +ERK+ +L+EELS E+ R
Sbjct: 121 EAPTSFIMETLQSYKEALASNDDTKAAEIEALLKSFEDEKIDLERKVVNLSEELSAERAR 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           ILRISADFDNFRKRTE+ERLSLV NAQGEV+E LL VLDNFERA+ QIKV+TEGEEKIN 
Sbjct: 181 ILRISADFDNFRKRTEKERLSLVTNAQGEVMERLLQVLDNFERAKTQIKVQTEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQSIYKQ  EILGSLGVVPVET+G PFDPLLHEAIMREDS EF+EG+I++EFRKGF LG
Sbjct: 241 SYQSIYKQLVEILGSLGVVPVETVGNPFDPLLHEAIMREDSTEFDEGVIIEEFRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEK-------SDEAAASEEHDSSENSEGSESESS 337
           +RLLRPSMVKVSAGPGP K         EAA  E  DSS  +E  E+ESS
Sbjct: 301 DRLLRPSMVKVSAGPGPAKPKEEQPSEGEAAVVETADSS--TEEVEAESS 347

[Close]

BLAST of CmoCh03G001980 vs. TAIR10
Match: AT5G17710.2 (AT5G17710.2 Co-chaperone GrpE family protein)

HSP 1 Score: 302.8 bits (774), Expect = 2.7e-82
Identity = 194/340 (57.06%), Postives = 238/340 (70.00%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCINSSKFSLRPRSLRFP 60
           MA +L+TP    TP    + + +     KP  VSF      +S   S + SLR  S  +P
Sbjct: 1   MAGLLKTPSLHLTP----TLLHAPSVPFKPFCVSFAGGR-NVSVSLSRRASLRSVSSGYP 60

Query: 61  ----KLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAEDVA 120
                L  F+S GE E +E E E  E E +++     G  D  +++   ++ E   E+ A
Sbjct: 61  LRLLNLVPFAS-GEAETTETEVESNEPEVQETD----GAVDVENENASAEEGEAEEEEAA 120

Query: 121 QSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVRILR 180
             VI + L+SYK+ALADNN  +I EIE+ LKSIEDEK  +  K+ SL+ ELSVE+ R++R
Sbjct: 121 --VITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERDRLIR 180

Query: 181 ISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQ 240
           ISADFDNFRKRTERERL+LV NAQGEVVE LL VLDNFERA++QIKVETEGEEK+  SYQ
Sbjct: 181 ISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAKSQIKVETEGEEKVTNSYQ 240

Query: 241 SIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLGERL 300
           SIYKQF EILGSLGV+ VET+GK FDP+LHEAIMREDSAE+EEGI+L+E+RKGFLLGERL
Sbjct: 241 SIYKQFVEILGSLGVIHVETVGKQFDPMLHEAIMREDSAEYEEGIVLEEYRKGFLLGERL 300

Query: 301 LRPSMVKVSAGPGPEKSDEAAASEEHDSSENSEGSESESS 337
           LRPSMVKVSAGPGPEK  EA   E   +++ S   ES SS
Sbjct: 301 LRPSMVKVSAGPGPEKPLEAEGEEA--TAQGSAEEESSSS 326

[Close]

BLAST of CmoCh03G001980 vs. TAIR10
Match: AT1G36390.1 (AT1G36390.1 Co-chaperone GrpE family protein)

HSP 1 Score: 180.6 bits (457), Expect = 1.6e-45
Identity = 96/213 (45.07%), Postives = 152/213 (71.36%), Query Frame = 1


Query: 105 TDDAEVNAEDVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLT 164
           T+++E  A    Q+ + + ++SYKQAL + +   + EIE+    IE EK  +++K+ SL+
Sbjct: 61  TNNSE-EANSKQQADVKTLIRSYKQALLNGDETSVTEIETMFCKIEKEKNKMDQKVLSLS 120

Query: 165 EELSVEKVRILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVE 224
            +++ EK   +R+ ADFDN RK+ +++RLS   NA+ +++++LL ++D+FE+A+ Q++V+
Sbjct: 121 MKIASEKEMKIRLQADFDNTRKKLDKDRLSTESNAKVQILKSLLPIIDSFEKAKLQVRVD 180

Query: 225 TEGEEKINQSYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILD 284
           T+ E+KI+ SYQ IY+QF E+L  L V  + T+GKPFDPLLHEAI RE+S   + GII +
Sbjct: 181 TDKEKKIDTSYQGIYRQFVEVLRYLRVSVIATVGKPFDPLLHEAISREESEAVKAGIITE 240

Query: 285 EFRKGFLLGERLLRPSMVKVSAGPGPEKSDEAA 318
           E  KGF+LG+R+LRP+ VKVS GP  +K+  AA
Sbjct: 241 ELNKGFVLGDRVLRPAKVKVSLGPVNKKTPSAA 272

[Close]

BLAST of CmoCh03G001980 vs. NCBI nr
Match: gi|449453123|ref|XP_004144308.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus])

HSP 1 Score: 513.5 bits (1321), Expect = 2.9e-142
Identity = 290/336 (86.31%), Postives = 308/336 (91.67%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCINSSKFSLRPRSLRFP 60
           MAT+LRTPFFQATPPA+VS  S SKSTLKP S+SF TSH+ I C NSSKFS RP SLRFP
Sbjct: 1   MATLLRTPFFQATPPASVSAFSLSKSTLKPSSLSFTTSHSFICCFNSSKFSTRPPSLRFP 60

Query: 61  KLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAEDVAQSVI 120
           K   F+SSGETEISE+EEEVR+SEAEDSSVSYTGVEDA SD+DI+DD+EVN ED  QSVI
Sbjct: 61  K-RPFASSGETEISELEEEVRDSEAEDSSVSYTGVEDATSDNDISDDSEVNTEDSTQSVI 120

Query: 121 ISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVRILRISAD 180
           I+ALQSYKQALADN+GAQ+VEIES+LKSIEDEKLAVERKL SL EELSVEK R+LRISAD
Sbjct: 121 IAALQSYKQALADNDGAQMVEIESFLKSIEDEKLAVERKLSSLIEELSVEKDRVLRISAD 180

Query: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240
           FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK
Sbjct: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240

Query: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLGERLLRPS 300
           QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDS EFEEGIILDEFRKGFLLG+RLLRPS
Sbjct: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSTEFEEGIILDEFRKGFLLGDRLLRPS 300

Query: 301 MVKVSAGPGPEKSDEAAASEEHDSSENSEGSESESS 337
           MVKVSAGPGPEKSDE A +E+ DSSE    SESESS
Sbjct: 301 MVKVSAGPGPEKSDETAPAEKLDSSEEFANSESESS 335

[Close]

BLAST of CmoCh03G001980 vs. NCBI nr
Match: gi|659111503|ref|XP_008455767.1| (PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo])

HSP 1 Score: 511.5 bits (1316), Expect = 1.1e-141
Identity = 290/336 (86.31%), Postives = 308/336 (91.67%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCINSSKFSLRPRSLRFP 60
           MAT+LRTPFFQAT PA+VS  S SKSTLKP S+SF TSH+ I  INSSKFS RP SLRFP
Sbjct: 1   MATLLRTPFFQATAPASVSAFSLSKSTLKPSSLSFTTSHSFICSINSSKFSTRPPSLRFP 60

Query: 61  KLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAEDVAQSVI 120
           K   F+SSGETEISE+EEEVR+SEAEDSSVSYTGVEDA SD+DI+DD+EVNAED  QSVI
Sbjct: 61  K-RPFASSGETEISELEEEVRDSEAEDSSVSYTGVEDATSDNDISDDSEVNAEDSTQSVI 120

Query: 121 ISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVRILRISAD 180
           ++ALQSYKQAL+DNNGAQIVEIES+LKSIEDEKLAVERKL SL EELSVEK R+LRISAD
Sbjct: 121 VAALQSYKQALSDNNGAQIVEIESFLKSIEDEKLAVERKLNSLIEELSVEKDRVLRISAD 180

Query: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240
           FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK
Sbjct: 181 FDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQSYQSIYK 240

Query: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLGERLLRPS 300
           QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDS EFE+GIILDEFRKGFLLG+RLLRPS
Sbjct: 241 QFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSTEFEDGIILDEFRKGFLLGDRLLRPS 300

Query: 301 MVKVSAGPGPEKSDEAAASEEHDSSENSEGSESESS 337
           MVKVSAGPGPEKSDE A +EE DSSE    SESESS
Sbjct: 301 MVKVSAGPGPEKSDETAPAEELDSSEEFANSESESS 335

[Close]

BLAST of CmoCh03G001980 vs. NCBI nr
Match: gi|645270821|ref|XP_008240630.1| (PREDICTED: grpE protein homolog, mitochondrial [Prunus mume])

HSP 1 Score: 342.8 bits (878), Expect = 6.7e-91
Identity = 214/343 (62.39%), Postives = 259/343 (75.51%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHA---TISCINSSKFSLRPRSL 60
           MA VLRT    AT     ST+S +    KP  VSFR S +       ++S +FS  P SL
Sbjct: 1   MANVLRTSPLGATFAQLPSTLSPNSP--KPSYVSFRQSQSGSIPYLTLSSLRFSHLP-SL 60

Query: 61  RFPKLASFSSSGETEISEVEEEVRE-SEAEDSSVSYTGVEDAASD---SDITDDAEVNAE 120
           RF K    +S GETE +E  EEVR+  E EDSS     VED+ SD   S  ++D E +AE
Sbjct: 61  RFAKFVPLASQGETETTETVEEVRQPEEIEDSSDGAVSVEDSTSDDEESGTSNDDEGDAE 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
           +   S II++LQ YK+ALA N+ +++ EIES+LKSIEDEK+++E+K+ SL+EELS EKVR
Sbjct: 121 EKPVSAIIASLQLYKEALASNDESKVAEIESFLKSIEDEKISLEKKVASLSEELSAEKVR 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           ILRISADF+NFRKRT+RER+SLV NAQGEVVE+LL V+DNFERA+ QIKVETEGEEKIN 
Sbjct: 181 ILRISADFENFRKRTDRERISLVTNAQGEVVESLLPVVDNFERAKTQIKVETEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQSIYKQF EIL SLGVVPVET+GKPFDPLLHEAIMREDS EFEEG+I+DEFRKGF LG
Sbjct: 241 SYQSIYKQFGEILSSLGVVPVETVGKPFDPLLHEAIMREDSTEFEEGVIIDEFRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEKSD-EAAASEEHDSSENSEGSESES 336
           +RLLRPSMVKVSAGPGP K + +   SEE D+SE ++   +E+
Sbjct: 301 DRLLRPSMVKVSAGPGPAKPEQQVPPSEEQDASETTQEGSTET 340

[Close]

BLAST of CmoCh03G001980 vs. NCBI nr
Match: gi|743907249|ref|XP_011047049.1| (PREDICTED: grpE protein homolog, mitochondrial isoform X2 [Populus euphratica])

HSP 1 Score: 340.9 bits (873), Expect = 2.6e-90
Identity = 212/343 (61.81%), Postives = 252/343 (73.47%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCI-------NSSKFSLR 60
           MATV++TP F A  P  +++ S S     PL +SF  SH     I       NS +F  +
Sbjct: 1   MATVIKTPPFSA--PRIINSSSISLKYANPLCLSF--SHNNNRSIPNFSLTKNSLRFPTK 60

Query: 61  PRSLRFPKLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAE 120
           P SLRF K A FSS GETEI+E EE ++E E EDSS     VEDAAS  +   DAE    
Sbjct: 61  P-SLRFVKFAPFSSQGETEITETEETIQEPEIEDSSDGAVEVEDAASSEEEIADAEDK-- 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
               SV++++L+SYK+ALA N+ + I EIE++LKSIEDEK+  ERK+ SLTEELS+E+ R
Sbjct: 121 ---PSVVMASLRSYKEALASNDESIIAEIEAFLKSIEDEKIDNERKVASLTEELSIERER 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           +LRISADFDNFRKRTERERLSLV NAQGEVVE LL VLDNFERA+ QIK  TEGEEKIN 
Sbjct: 181 VLRISADFDNFRKRTERERLSLVTNAQGEVVENLLSVLDNFERAKTQIKTATEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQ+IYKQF EILGSLGVVPVET+GKPFDP+LHEAIMREDS E EEG +L+E+RKGF LG
Sbjct: 241 SYQNIYKQFMEILGSLGVVPVETVGKPFDPMLHEAIMREDSDELEEGTVLEEYRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEKSDEAAASEE--HDSSENSEGSESE 335
           +RLLRPSMVKVSAGPGP K ++   S+E    +S  SEG  +E
Sbjct: 301 DRLLRPSMVKVSAGPGPVKPEQVEESQEEAEATSGTSEGGSTE 333

[Close]

BLAST of CmoCh03G001980 vs. NCBI nr
Match: gi|224126029|ref|XP_002319738.1| (co-chaperone grpE family protein [Populus trichocarpa])

HSP 1 Score: 339.7 bits (870), Expect = 5.7e-90
Identity = 209/343 (60.93%), Postives = 249/343 (72.59%), Query Frame = 1


Query: 1   MATVLRTPFFQATPPATVSTISSSKSTLKPLSVSFRTSHATISCI-------NSSKFSLR 60
           MATV++TP F A  P  ++  S S     PL +SF  SH     I       NS +F  +
Sbjct: 1   MATVIKTPPFSA--PRIINNSSISLKYANPLCLSF--SHNNNRSIPNFSLAKNSLRFPTK 60

Query: 61  PRSLRFPKLASFSSSGETEISEVEEEVRESEAEDSSVSYTGVEDAASDSDITDDAEVNAE 120
           P SLRF K   FSS GETE +E EE ++E E EDSS     VEDAAS  ++    EV   
Sbjct: 61  P-SLRFVKFVPFSSQGETETTETEETIQEPEIEDSSDGAVEVEDAASSEEVASSEEVADA 120

Query: 121 DVAQSVIISALQSYKQALADNNGAQIVEIESYLKSIEDEKLAVERKLESLTEELSVEKVR 180
           +   SV++++L+SYK+ALA N+ + I EIE++LKS+EDEK+  ERK+ SLTEELS+EK R
Sbjct: 121 EDTSSVVMASLRSYKEALASNDESIIAEIEAFLKSVEDEKIDNERKVASLTEELSIEKER 180

Query: 181 ILRISADFDNFRKRTERERLSLVKNAQGEVVETLLGVLDNFERARAQIKVETEGEEKINQ 240
           +LRISADFDNFRKRTERERLSLV NAQGEVVE LL VLDNFERA+ QIK  TEGEEKIN 
Sbjct: 181 VLRISADFDNFRKRTERERLSLVTNAQGEVVENLLSVLDNFERAKTQIKTATEGEEKINN 240

Query: 241 SYQSIYKQFTEILGSLGVVPVETIGKPFDPLLHEAIMREDSAEFEEGIILDEFRKGFLLG 300
           SYQ+IYKQF EIL SLGVVPVETIGKPFDP+LHEAIMREDS  FEEG +L+E+RKGF LG
Sbjct: 241 SYQNIYKQFMEILVSLGVVPVETIGKPFDPMLHEAIMREDSDAFEEGTVLEEYRKGFKLG 300

Query: 301 ERLLRPSMVKVSAGPGPEKSDEAAASEE--HDSSENSEGSESE 335
           +RLLRPSMVKVSAGPGP K ++   S+E    +S  SEG  +E
Sbjct: 301 DRLLRPSMVKVSAGPGPVKPEQVEESQEEAEATSGTSEGGSTE 338

The following BLAST results are available for this feature:

BLAST of CmoCh03G001980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRPE_SYNY3	2.4e-32	42.77	Protein GrpE OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=grpE PE=3 SV=1	[more]
GRPE_CYAP7	9.2e-32	41.38	Protein GrpE OS=Cyanothece sp. (strain PCC 7424) GN=grpE PE=3 SV=1	[more]
GRPE_SYNPX	1.6e-31	41.18	Protein GrpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1	[more]
GRPE_SYNS9	1.6e-31	42.26	Protein GrpE OS=Synechococcus sp. (strain CC9902) GN=grpE PE=3 SV=1	[more]
GRPE_PROM0	2.7e-31	41.57	Protein GrpE OS=Prochlorococcus marinus (strain MIT 9301) GN=grpE PE=3 SV=1	[more]

BLAST of CmoCh03G001980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L229_CUCSA	2.0e-142	86.31	GrpE protein homolog OS=Cucumis sativus GN=Csa_4G417510 PE=3 SV=1	[more]
B9I664_POPTR	4.0e-90	60.93	GrpE protein homolog OS=Populus trichocarpa GN=POPTR_0013s06430g PE=3 SV=1	[more]
M5VQG4_PRUPE	5.2e-90	63.01	GrpE protein homolog OS=Prunus persica GN=PRUPE_ppa008162mg PE=3 SV=1	[more]
A0A067L6A9_JATCU	6.8e-90	60.70	GrpE protein homolog OS=Jatropha curcas GN=JCGZ_02644 PE=3 SV=1	[more]
A0A067DUF0_CITSI	3.7e-88	60.00	GrpE protein homolog OS=Citrus sinensis GN=CISIN_1g019043mg PE=3 SV=1	[more]

BLAST of CmoCh03G001980 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G17710.2	2.7e-82	57.06	Co-chaperone GrpE family protein	[more]
AT1G36390.1	1.6e-45	45.07	Co-chaperone GrpE family protein	[more]

BLAST of CmoCh03G001980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453123\|ref\|XP_004144308.1\|	2.9e-142	86.31	PREDICTED: grpE protein homolog, mitochondrial [Cucumis sativus]	[more]
gi\|659111503\|ref\|XP_008455767.1\|	1.1e-141	86.31	PREDICTED: grpE protein homolog, mitochondrial [Cucumis melo]	[more]
gi\|645270821\|ref\|XP_008240630.1\|	6.7e-91	62.39	PREDICTED: grpE protein homolog, mitochondrial [Prunus mume]	[more]
gi\|743907249\|ref\|XP_011047049.1\|	2.6e-90	61.81	PREDICTED: grpE protein homolog, mitochondrial isoform X2 [Populus euphratica]	[more]
gi\|224126029\|ref\|XP_002319738.1\|	5.7e-90	60.93	co-chaperone grpE family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000740	GrpE
IPR009012	GrpE_head
IPR013805	GrpE_coiled_coil

Vocabulary: **Molecular Function**
Term	Definition
GO:0000774	adenyl-nucleotide exchange factor activity
GO:0042803	protein homodimerization activity
GO:0051087	chaperone binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0000774	adenyl-nucleotide exchange factor activity
molecular_function	GO:0051087	chaperone binding
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0042803	protein homodimerization activity
molecular_function	GO:0005507	copper ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G001980.1	CmoCh03G001980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000740	GrpE nucleotide exchange factor	PRINTS	PR00773	GRPEPROTEIN	coord: 258..273 score: 1.1E-24coord: 175..191 score: 1.1E-24coord: 285..304 score: 1.1E-24coord: 203..218 score: 1.1
IPR000740	GrpE nucleotide exchange factor	HAMAP	MF_01151	GrpE	coord: 77..306 score: 17
IPR000740	GrpE nucleotide exchange factor	PANTHER	PTHR21237	GRPE PROTEIN	coord: 2..90 score: 1.4E-142coord: 132..309 score: 1.4E
IPR000740	GrpE nucleotide exchange factor	PFAM	PF01025	GrpE	coord: 147..305 score: 2.1
IPR000740	GrpE nucleotide exchange factor	PROSITE	PS01071	GRPE	coord: 261..304 scor
IPR009012	GrpE nucleotide exchange factor, head	GENE3D	G3DSA:2.30.22.10		coord: 250..308 score: 2.9
IPR009012	GrpE nucleotide exchange factor, head	unknown	SSF51064	Head domain of nucleotide exchange factor GrpE	coord: 252..307 score: 1.96
IPR013805	GrpE nucleotide exchange factor, coiled-coil	GENE3D	G3DSA:3.90.20.20		coord: 150..247 score: 1.4
None	No IPR available	unknown	Coil	Coil	coord: 146..166 score: -coord: 66..86 scor
None	No IPR available	PANTHER	PTHR21237:SF27	GRPE PROTEIN HOMOLOG	coord: 2..90 score: 1.4E-142coord: 132..309 score: 1.4E
None	No IPR available	unknown	SSF58014	Coiled-coil domain of nucleotide exchange factor GrpE	coord: 156..250 score: 1.31

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G001980	CmaCh03G001690	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G001980	CmaCh07G011170	Cucurbita maxima (Rimu)	cmacmoB859
CmoCh03G001980	Cla012065	Watermelon (97103) v1	cmowmB626
CmoCh03G001980	Csa4G417510	Cucumber (Chinese Long) v2	cmocuB659
CmoCh03G001980	MELO3C019156	Melon (DHL92) v3.5.1	cmomeB602
CmoCh03G001980	ClCG04G006040	Watermelon (Charleston Gray)	cmowcgB587
CmoCh03G001980	CSPI04G18710	Wild cucumber (PI 183967)	cmocpiB671
CmoCh03G001980	Lsi01G017400	Bottle gourd (USVL1VR-Ls)	cmolsiB587
CmoCh03G001980	Cp4.1LG10g10790	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G001980	Cp4.1LG19g02320	Cucurbita pepo (Zucchini)	cmocpeB625
CmoCh03G001980	MELO3C019156.2	Melon (DHL92) v3.6.1	cmomedB690
CmoCh03G001980	CsaV3_4G029080	Cucumber (Chinese Long) v3	cmocucB0783
CmoCh03G001980	Cla97C04G072600	Watermelon (97103) v2	cmowmbB659
CmoCh03G001980	Bhi03G002091	Wax gourd	cmowgoB0787
CmoCh03G001980	CsGy4G017780	Cucumber (Gy14) v2	cgybcmoB509
CmoCh03G001980	Carg26123	Silver-seed gourd	carcmoB1296
CmoCh03G001980	Carg13330	Silver-seed gourd	carcmoB0789

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh03G001980	CmoCh07G011670	Cucurbita moschata (Rifu)	cmocmoB456

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G001980	Cucumber (Gy14) v1	cgycmoB0937
CmoCh03G001980	Bottle gourd (USVL1VR-Ls)	cmolsiB600