CmoCh02G014330 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G014330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cmo_Chr02 : 8463188 .. 8463466 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAATAATGAGCTGGGTCGATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

mRNA sequence

ATGAGCAGAATAATGAGCTGGGTCGATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Coding sequence (CDS)

ATGAGCAGAATAATGAGCTGGGTCGATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Homology

[Close]

BLAST of CmoCh02G014330 vs. TrEMBL
Match: A0A0A0KMG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.7e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MSRIMSWVDAARCAVIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS  DAARC++IG+E  Q+       SK FD FQMPLHYP+Y+RSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKAFDQFQMPLHYPRYRRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 93
          CLLKEYGLPV GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 CLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmoCh02G014330 vs. TrEMBL
Match: A0A067K0L0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20490 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-21
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 20 QPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRK 79
          +P   Q Q     +   F+MPLHYP++K+SDY+ M EWKLDCLLKEYGLPV GDV +KRK
Sbjct: 15 KPNGHQNQETKKTENCFFRMPLHYPRFKKSDYQNMPEWKLDCLLKEYGLPVMGDVDEKRK 74

Query: 80 FAMGAFLWPSEM 92
          FAMGAFLWPSEM
Sbjct: 75 FAMGAFLWPSEM 86

[Close]

BLAST of CmoCh02G014330 vs. TrEMBL
Match: W9RQ09_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012076 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.1e-21
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 1


Query: 36 HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 90
          HFQMPLHYPKYKRSDYE M EW+LDCLL+EYGLP+ GD  +KRKFAMGAFLWPS
Sbjct: 33 HFQMPLHYPKYKRSDYETMPEWRLDCLLREYGLPIIGDAEEKRKFAMGAFLWPS 86

[Close]

BLAST of CmoCh02G014330 vs. TrEMBL
Match: B9RCN8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 1


Query: 5  MSWVDAARCA-VIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLL 64
          MS +  +  A  +   +P   Q+Q     +   FQMPLHYP++K+ DYE M EW+LDCLL
Sbjct: 1  MSGITCSNTAHAVSGLRPNGHQKQENKRDKCSCFQMPLHYPRFKKGDYETMPEWRLDCLL 60

Query: 65 KEYGLPVAGDVAQKRKFAMGAFLWPSEM 92
          KEYGLP+ GDV QKRKFAMGAFLWPSE+
Sbjct: 61 KEYGLPIVGDVNQKRKFAMGAFLWPSEL 88

[Close]

BLAST of CmoCh02G014330 vs. TrEMBL
Match: V4VJ27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022942mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-20
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 1


Query: 36  HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
           +FQMPLHYP+YK+ DYE M EWKLDCLLKEYGLPV GDV QKR FAMGAFLWPSE
Sbjct: 56  YFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVNQKRDFAMGAFLWPSE 110

[Close]

BLAST of CmoCh02G014330 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.6e-19
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 1


Query: 33 QFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
          Q   FQ+PLHYPKY +SDYE M EW+LD LL+EYGLPV GD  +KRKFA+GAFLW SE
Sbjct: 41 QSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of CmoCh02G014330 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-15
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1


Query: 37 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 90
          F+MPLHYP+Y + DY+ M EWKLD +L +YGL   GD+A KR FA+GAFLW S
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLWIS 84

[Close]

BLAST of CmoCh02G014330 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.1e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 37  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEM 92
           FQ+PLHYPKY +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of CmoCh02G014330 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 37 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGD--VAQKRKFAMGAFLWP 89
          F+MPLHYP+Y + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of CmoCh02G014330 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 61.6 bits (148), Expect = 2.9e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1


Query: 37  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPV-AGDVAQKRKFAMGAFLW 88
           FQMPL YP Y +  Y+ M+E +LD LLK YGLP   G+++ K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]

BLAST of CmoCh02G014330 vs. NCBI nr
Match: gi|700194857|gb|KGN50034.1| (hypothetical protein Csa_5G151500 [Cucumis sativus])

HSP 1 Score: 144.4 bits (363), Expect = 9.6e-32
Identity = 69/92 (75.00%), Postives = 75/92 (81.52%), Query Frame = 1


Query: 1  MSRIMSWVDAARCAVIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS  DAARC++IG+E  Q+       SK FD FQMPLHYP+Y+RSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKAFDQFQMPLHYPRYRRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 93
          CLLKEYGLPV GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 CLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmoCh02G014330 vs. NCBI nr
Match: gi|659074013|ref|XP_008437375.1| (PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo])

HSP 1 Score: 142.9 bits (359), Expect = 2.8e-31
Identity = 68/92 (73.91%), Postives = 74/92 (80.43%), Query Frame = 1


Query: 1  MSRIMSWVDAARCAVIGAEQPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS  DAARC++IG+E  Q+       SK  D FQMPLHYP+YKRSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKALDQFQMPLHYPRYKRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 93
          CLLKEYGLP+ GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 CLLKEYGLPIVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmoCh02G014330 vs. NCBI nr
Match: gi|747041550|ref|XP_011073609.1| (PREDICTED: uncharacterized protein LOC105158521 [Sesamum indicum])

HSP 1 Score: 115.2 bits (287), Expect = 6.2e-23
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 10 AARCAVI-GAEQPQQQQQQRVISKQFDH----FQMPLHYPKYKRSDYEGMAEWKLDCLLK 69
          +A CA + G  +P   QQQ+++S   +     FQMPLHYP+YK+SDYE M EW+LDCLLK
Sbjct: 8  SAACATVNGGVRPNGHQQQQLVSSVMNTKGCGFQMPLHYPRYKKSDYEKMPEWQLDCLLK 67

Query: 70 EYGLPVAGDVAQKRKFAMGAFLWPSEM 92
          EYGLPVAGDV QKRKFAMGAFLWP ++
Sbjct: 68 EYGLPVAGDVHQKRKFAMGAFLWPDQL 94

[Close]

BLAST of CmoCh02G014330 vs. NCBI nr
Match: gi|658000022|ref|XP_008392452.1| (PREDICTED: uncharacterized protein LOC103454635 [Malus domestica])

HSP 1 Score: 107.8 bits (268), Expect = 1.0e-20
Identity = 45/55 (81.82%), Postives = 52/55 (94.55%), Query Frame = 1


Query: 36 HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
          +FQMPLHYP+Y++SDYEGM EWKLDCLL++YGLPV GDV QKRKFAMGAFLWPS+
Sbjct: 35 NFQMPLHYPRYRKSDYEGMPEWKLDCLLQQYGLPVIGDVNQKRKFAMGAFLWPSQ 89

[Close]

BLAST of CmoCh02G014330 vs. NCBI nr
Match: gi|643711906|gb|KDP25334.1| (hypothetical protein JCGZ_20490 [Jatropha curcas])

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-20
Identity = 48/72 (66.67%), Postives = 56/72 (77.78%), Query Frame = 1


Query: 20 QPQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRK 79
          +P   Q Q     +   F+MPLHYP++K+SDY+ M EWKLDCLLKEYGLPV GDV +KRK
Sbjct: 15 KPNGHQNQETKKTENCFFRMPLHYPRFKKSDYQNMPEWKLDCLLKEYGLPVMGDVDEKRK 74

Query: 80 FAMGAFLWPSEM 92
          FAMGAFLWPSEM
Sbjct: 75 FAMGAFLWPSEM 86

The following BLAST results are available for this feature:

BLAST of CmoCh02G014330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G014330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMG0_CUCSA	6.7e-32	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1	[more]
A0A067K0L0_JATCU	9.1e-21	66.67	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20490 PE=4 SV=1	[more]
W9RQ09_9ROSA	9.1e-21	83.33	Uncharacterized protein OS=Morus notabilis GN=L484_012076 PE=4 SV=1	[more]
B9RCN8_RICCO	2.0e-20	56.82	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1	[more]
V4VJ27_9ROSI	2.0e-20	83.64	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022942mg PE=4 SV=1	[more]

BLAST of CmoCh02G014330 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41761.1	2.6e-19	70.69	unknown protein	[more]
AT3G55570.1	1.7e-15	62.26	unknown protein	[more]
AT5G55620.1	2.1e-13	54.55	unknown protein	[more]
AT3G09950.1	3.1e-12	55.56	unknown protein	[more]
AT3G11405.1	2.9e-10	55.77	unknown protein	[more]

BLAST of CmoCh02G014330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700194857\|gb\|KGN50034.1\|	9.6e-32	75.00	hypothetical protein Csa_5G151500 [Cucumis sativus]	[more]
gi\|659074013\|ref\|XP_008437375.1\|	2.8e-31	73.91	PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo]	[more]
gi\|747041550\|ref\|XP_011073609.1\|	6.2e-23	63.22	PREDICTED: uncharacterized protein LOC105158521 [Sesamum indicum]	[more]
gi\|658000022\|ref\|XP_008392452.1\|	1.0e-20	81.82	PREDICTED: uncharacterized protein LOC103454635 [Malus domestica]	[more]
gi\|643711906\|gb\|KDP25334.1\|	1.3e-20	66.67	hypothetical protein JCGZ_20490 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G014330.1	CmoCh02G014330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 11..90 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G014330	Cucsa.303740	Cucumber (Gy14) v1	cgycmoB0832
CmoCh02G014330	CmaCh02G014000	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G014330	Cla011386	Watermelon (97103) v1	cmowmB563
CmoCh02G014330	Csa5G151500	Cucumber (Chinese Long) v2	cmocuB598
CmoCh02G014330	MELO3C005736	Melon (DHL92) v3.5.1	cmomeB519
CmoCh02G014330	ClCG01G002050	Watermelon (Charleston Gray)	cmowcgB516
CmoCh02G014330	CSPI05G04780	Wild cucumber (PI 183967)	cmocpiB606
CmoCh02G014330	Lsi09G001890	Bottle gourd (USVL1VR-Ls)	cmolsiB516
CmoCh02G014330	Cp4.1LG05g02950	Cucurbita pepo (Zucchini)	cmocpeB596
CmoCh02G014330	MELO3C005736.2	Melon (DHL92) v3.6.1	cmomedB596
CmoCh02G014330	CsaV3_5G002180	Cucumber (Chinese Long) v3	cmocucB0718
CmoCh02G014330	Cla97C01G002100	Watermelon (97103) v2	cmowmbB575
CmoCh02G014330	Bhi12G000147	Wax gourd	cmowgoB0704
CmoCh02G014330	CsGy5G002070	Cucumber (Gy14) v2	cgybcmoB613
CmoCh02G014330	Carg02571	Silver-seed gourd	carcmoB1237

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G014330	Cucurbita pepo (Zucchini)	cmocpeB550
CmoCh02G014330	Silver-seed gourd	carcmoB0491
CmoCh02G014330	Wax gourd	cmowgoB0738
CmoCh02G014330	Cucurbita moschata (Rifu)	cmocmoB250
CmoCh02G014330	Cucurbita maxima (Rimu)	cmacmoB298