CmaCh02G014000 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh02G014000
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Chromosome 3B, genomic scaffold, cultivar Chinese Spring
Location	Cma_Chr02 : 8117503 .. 8117790 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAATAATGAGCTGGGTCTATACTGGTCGGTACGCCATGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTGGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATATGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTGTGAAATGTACGGATCGTTATGA

mRNA sequence

ATGAGCAGAATAATGAGCTGGGTCTATACTGGTCGGTACGCCATGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTGGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATATGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTGTGAAATGTACGGATCGTTATGA

Coding sequence (CDS)

ATGAGCAGAATAATGAGCTGGGTCTATACTGGTCGGTACGCCATGATCGGGGCCGAGCAGCCGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTGGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGCCTTCTCAAAGAATATGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTGTGAAATGTACGGATCGTTATGA

Protein sequence

MSRIMSWVYTGRYAMIGAEQPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMYGSL

Homology

[Close]

BLAST of CmaCh02G014000 vs. TrEMBL
Match: A0A0A0KMG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-29
Identity = 66/92 (71.74%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 1  MSRIMSWVYTGRYAMIGAEQPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS     R +MIG+E  Q+       SK  D FQMPLHYP+Y+RSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKAFDQFQMPLHYPRYRRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 93
          CLLKEYGLPV GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 CLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmaCh02G014000 vs. TrEMBL
Match: A0A067K0L0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20490 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 20 QPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRK 79
          +P   Q Q     +   F+MPLHYP++K+SDY+ M EWKLDCLLKEYGLPV GDV +KRK
Sbjct: 15 KPNGHQNQETKKTENCFFRMPLHYPRFKKSDYQNMPEWKLDCLLKEYGLPVMGDVDEKRK 74

Query: 80 FAMGAFLWPCEM 92
          FAMGAFLWP EM
Sbjct: 75 FAMGAFLWPSEM 86

[Close]

BLAST of CmaCh02G014000 vs. TrEMBL
Match: W9RQ09_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012076 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.1e-20
Identity = 48/76 (63.16%), Postives = 55/76 (72.37%), Query Frame = 1


Query: 13 YAMIGAEQPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAG 72
          Y + G +        + I K   HFQMPLHYPKYKRSDYE M EW+LDCLL+EYGLP+ G
Sbjct: 11 YTIQGLKPSGNNHMSKNIEKPC-HFQMPLHYPKYKRSDYETMPEWRLDCLLREYGLPIIG 70

Query: 73 DVAQKRKFAMGAFLWP 89
          D  +KRKFAMGAFLWP
Sbjct: 71 DAEEKRKFAMGAFLWP 85

[Close]

BLAST of CmaCh02G014000 vs. TrEMBL
Match: B9RCN8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-20
Identity = 46/72 (63.89%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 20 QPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRK 79
          +P   Q+Q     +   FQMPLHYP++K+ DYE M EW+LDCLLKEYGLP+ GDV QKRK
Sbjct: 17 RPNGHQKQENKRDKCSCFQMPLHYPRFKKGDYETMPEWRLDCLLKEYGLPIVGDVNQKRK 76

Query: 80 FAMGAFLWPCEM 92
          FAMGAFLWP E+
Sbjct: 77 FAMGAFLWPSEL 88

[Close]

BLAST of CmaCh02G014000 vs. TrEMBL
Match: A0A067GA15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034561mg PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 7.9e-20
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 1


Query: 36 HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCE 91
          +FQMPLHYP+YK+ DYE M EWKLDCLLKEYGLPV GDV QKR FAMGAFLWP E
Sbjct: 35 YFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVNQKRDFAMGAFLWPSE 89

[Close]

BLAST of CmaCh02G014000 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 90.1 bits (222), Expect = 7.8e-19
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1


Query: 33 QLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCE 91
          Q   FQ+PLHYPKY +SDYE M EW+LD LL+EYGLPV GD  +KRKFA+GAFLW  E
Sbjct: 41 QSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of CmaCh02G014000 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.4e-15
Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1


Query: 37 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLW 88
          F+MPLHYP+Y + DY+ M EWKLD +L +YGL   GD+A KR FA+GAFLW
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of CmaCh02G014000 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 3.8e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1


Query: 37  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCEM 92
           FQ+PLHYPKY +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of CmaCh02G014000 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1


Query: 37 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGD--VAQKRKFAMGAFLWP 89
          F+MPLHYP+Y + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of CmaCh02G014000 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.6e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = 1


Query: 37  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPV-AGDVAQKRKFAMGAFLWPCEMYGSL 96
           FQMPL YP Y +  Y+ M+E +LD LLK YGLP   G+++ K++FA+GAFLW   +  SL
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLWETGLNSSL 116

[Close]

BLAST of CmaCh02G014000 vs. NCBI nr
Match: gi|659074013|ref|XP_008437375.1| (PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo])

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 67/92 (72.83%), Postives = 72/92 (78.26%), Query Frame = 1


Query: 1  MSRIMSWVYTGRYAMIGAEQPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS     R +MIG+E  Q+       SK LD FQMPLHYP+YKRSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKALDQFQMPLHYPRYKRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 93
          CLLKEYGLP+ GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 CLLKEYGLPIVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmaCh02G014000 vs. NCBI nr
Match: gi|700194857|gb|KGN50034.1| (hypothetical protein Csa_5G151500 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 66/92 (71.74%), Postives = 71/92 (77.17%), Query Frame = 1


Query: 1  MSRIMSWVYTGRYAMIGAEQPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLD 60
          MS IMS     R +MIG+E  Q+       SK  D FQMPLHYP+Y+RSDYEGM EWKLD
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS------SKAFDQFQMPLHYPRYRRSDYEGMPEWKLD 60

Query: 61 CLLKEYGLPVAGDVAQKRKFAMGAFLWPCEMY 93
          CLLKEYGLPV GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 CLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of CmaCh02G014000 vs. NCBI nr
Match: gi|747041550|ref|XP_011073609.1| (PREDICTED: uncharacterized protein LOC105158521 [Sesamum indicum])

HSP 1 Score: 112.1 bits (279), Expect = 5.5e-22
Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1


Query: 17 GAEQPQQQQQQRVISKQLDH----FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAG 76
          G  +P   QQQ+++S  ++     FQMPLHYP+YK+SDYE M EW+LDCLLKEYGLPVAG
Sbjct: 16 GGVRPNGHQQQQLVSSVMNTKGCGFQMPLHYPRYKKSDYEKMPEWQLDCLLKEYGLPVAG 75

Query: 77 DVAQKRKFAMGAFLWPCEM 92
          DV QKRKFAMGAFLWP ++
Sbjct: 76 DVHQKRKFAMGAFLWPDQL 94

[Close]

BLAST of CmaCh02G014000 vs. NCBI nr
Match: gi|658000022|ref|XP_008392452.1| (PREDICTED: uncharacterized protein LOC103454635 [Malus domestica])

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-20
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1


Query: 36 HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPCE 91
          +FQMPLHYP+Y++SDYEGM EWKLDCLL++YGLPV GDV QKRKFAMGAFLWP +
Sbjct: 35 NFQMPLHYPRYRKSDYEGMPEWKLDCLLQQYGLPVIGDVNQKRKFAMGAFLWPSQ 89

[Close]

BLAST of CmaCh02G014000 vs. NCBI nr
Match: gi|643711906|gb|KDP25334.1| (hypothetical protein JCGZ_20490 [Jatropha curcas])

HSP 1 Score: 105.5 bits (262), Expect = 5.1e-20
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 20 QPQQQQQQRVISKQLDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRK 79
          +P   Q Q     +   F+MPLHYP++K+SDY+ M EWKLDCLLKEYGLPV GDV +KRK
Sbjct: 15 KPNGHQNQETKKTENCFFRMPLHYPRFKKSDYQNMPEWKLDCLLKEYGLPVMGDVDEKRK 74

Query: 80 FAMGAFLWPCEM 92
          FAMGAFLWP EM
Sbjct: 75 FAMGAFLWPSEM 86

The following BLAST results are available for this feature:

BLAST of CmaCh02G014000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh02G014000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMG0_CUCSA	1.1e-29	71.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1	[more]
A0A067K0L0_JATCU	3.6e-20	65.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20490 PE=4 SV=1	[more]
W9RQ09_9ROSA	6.1e-20	63.16	Uncharacterized protein OS=Morus notabilis GN=L484_012076 PE=4 SV=1	[more]
B9RCN8_RICCO	7.9e-20	63.89	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691030 PE=4 SV=1	[more]
A0A067GA15_CITSI	7.9e-20	81.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034561mg PE=4 SV=1	[more]

BLAST of CmaCh02G014000 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41761.1	7.8e-19	68.97	unknown protein	[more]
AT3G55570.1	2.4e-15	62.75	unknown protein	[more]
AT5G55620.1	3.8e-13	54.55	unknown protein	[more]
AT3G09950.1	2.4e-12	55.56	unknown protein	[more]
AT3G11405.1	4.6e-11	51.67	unknown protein	[more]

BLAST of CmaCh02G014000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074013\|ref\|XP_008437375.1\|	3.2e-30	72.83	PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo]	[more]
gi\|700194857\|gb\|KGN50034.1\|	1.6e-29	71.74	hypothetical protein Csa_5G151500 [Cucumis sativus]	[more]
gi\|747041550\|ref\|XP_011073609.1\|	5.5e-22	65.82	PREDICTED: uncharacterized protein LOC105158521 [Sesamum indicum]	[more]
gi\|658000022\|ref\|XP_008392452.1\|	3.9e-20	80.00	PREDICTED: uncharacterized protein LOC103454635 [Malus domestica]	[more]
gi\|643711906\|gb\|KDP25334.1\|	5.1e-20	65.28	hypothetical protein JCGZ_20490 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh02G014000.1	CmaCh02G014000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 15..87 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh02G014000	Cucsa.303740	Cucumber (Gy14) v1	cgycmaB0837
CmaCh02G014000	Cla011386	Watermelon (97103) v1	cmawmB568
CmaCh02G014000	Csa5G151500	Cucumber (Chinese Long) v2	cmacuB608
CmaCh02G014000	MELO3C005736	Melon (DHL92) v3.5.1	cmameB530
CmaCh02G014000	ClCG01G002050	Watermelon (Charleston Gray)	cmawcgB518
CmaCh02G014000	CSPI05G04780	Wild cucumber (PI 183967)	cmacpiB614
CmaCh02G014000	CmoCh02G014330	Cucurbita moschata (Rifu)	cmacmoB619
CmaCh02G014000	Lsi09G001890	Bottle gourd (USVL1VR-Ls)	cmalsiB530
CmaCh02G014000	Cp4.1LG05g02950	Cucurbita pepo (Zucchini)	cmacpeB647
CmaCh02G014000	MELO3C005736.2	Melon (DHL92) v3.6.1	cmamedB609
CmaCh02G014000	CsaV3_5G002180	Cucumber (Chinese Long) v3	cmacucB0730
CmaCh02G014000	Cla97C01G002100	Watermelon (97103) v2	cmawmbB600
CmaCh02G014000	Bhi12G000147	Wax gourd	cmawgoB0711
CmaCh02G014000	CsGy5G002070	Cucumber (Gy14) v2	cgybcmaB635
CmaCh02G014000	Carg02571	Silver-seed gourd	carcmaB1268

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh02G014000	Wax gourd	cmawgoB0747
CmaCh02G014000	Cucurbita maxima (Rimu)	cmacmaB312
CmaCh02G014000	Cucurbita moschata (Rifu)	cmacmoB583
CmaCh02G014000	Cucurbita pepo (Zucchini)	cmacpeB601
CmaCh02G014000	Silver-seed gourd	carcmaB0508