Carg02571 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg02571
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Cytoplasmic tRNA 2-thiolation protein 1
Location	Cucurbita_argyrosperma_scaffold_009 : 684575 .. 684856 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

mRNA sequence

ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Coding sequence (CDS)

ATGAGCAGAATAATGAGCTGGGTCTATGCTGCTCGGTGCGCCGTGATCGGGGCCGAGCAGCCGCAGCAGCAGCAGCAACAGCAGCGAGTGATCAGCAAGCAGTTCGATCATTTTCAGATGCCTCTTCACTACCCAAAGTACAAGAGGAGTGACTATGAGGGCATGGCGGAGTGGAAACTGGACTGTCTTCTCAAGGAATACGGCCTCCCGGTGGCTGGAGACGTCGCCCAGAAGCGAAAGTTCGCCATGGGAGCTTTTCTTTGGCCTTCTGAAATGTATTGA

Protein sequence

MSRIMSWVYAARCAVIGAEQPQQQQQQQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY

Homology

[Close]

BLAST of Carg02571 vs. NCBI nr
Match: XP_022958391.1 (uncharacterized protein LOC111459627 [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 3.2e-39
Identity = 86/93 (92.47%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MSRIMSWVYAARCAVIGAEQXXXXXXXXXVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MSRIMSWV AARCAVIGAEQ    XXX  VISKQFDHFQMPLHYPKYKRSDYEGMAEWKL
Sbjct: 1  MSRIMSWVDAARCAVIGAEQ-PQQXXXQRVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY
Sbjct: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 92

[Close]

BLAST of Carg02571 vs. NCBI nr
Match: KGN50034.1 (hypothetical protein Csa_5G151500 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 67/93 (72.04%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1  MSRIMSWVYAARCAVIGAEQXXXXXXXXXVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MS IMS   AARC++IG+E            SK FD FQMPLHYP+Y+RSDYEGM EWKL
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS-------SKAFDQFQMPLHYPRYRRSDYEGMPEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPV GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 DCLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of Carg02571 vs. NCBI nr
Match: XP_022146008.1 (uncharacterized protein LOC111015321 [Momordica charantia])

HSP 1 Score: 120.9 bits (302), Expect = 2.2e-24
Identity = 51/63 (80.95%), Postives = 56/63 (88.89%), Query Frame = 0


Query: 31 ISKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 90
          +SKQF  FQMPLHYP+YK+SDYE M EWKLDCLLKEYGLP+ GDVAQKRKFAMGAFLWP 
Sbjct: 22 VSKQFHQFQMPLHYPRYKKSDYEAMPEWKLDCLLKEYGLPIVGDVAQKRKFAMGAFLWPC 81

Query: 91 EMY 94
          + Y
Sbjct: 82 DQY 84

[Close]

BLAST of Carg02571 vs. NCBI nr
Match: XP_011073609.1 (uncharacterized protein LOC105158521 [Sesamum indicum])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 46/55 (83.64%), Postives = 51/55 (92.73%), Query Frame = 0


Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEM 93
          FQMPLHYP+YK+SDYE M EW+LDCLLKEYGLPVAGDV QKRKFAMGAFLWP ++
Sbjct: 40 FQMPLHYPRYKKSDYEKMPEWQLDCLLKEYGLPVAGDVHQKRKFAMGAFLWPDQL 94

[Close]

BLAST of Carg02571 vs. NCBI nr
Match: POF23872.1 (hypothetical protein CFP56_23692 [Quercus suber])

HSP 1 Score: 108.2 bits (269), Expect = 1.5e-20
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 32 SKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
          S    HFQMPLHYP+Y++SDYE M EWKLDCLL EYGLPV GDV QKR FAMGAFLWPS+
Sbjct: 26 SNNCHHFQMPLHYPRYRKSDYETMPEWKLDCLLNEYGLPVTGDVTQKRNFAMGAFLWPSQ 85

[Close]

BLAST of Carg02571 vs. TAIR10
Match: AT5G41761.1 (unknown protein)

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-19
Identity = 41/58 (70.69%), Postives = 47/58 (81.03%), Query Frame = 0


Query: 34 QFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 92
          Q   FQ+PLHYPKY +SDYE M EW+LD LL+EYGLPV GD  +KRKFA+GAFLW SE
Sbjct: 41 QSSSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSSE 98

[Close]

BLAST of Carg02571 vs. TAIR10
Match: AT3G55570.1 (unknown protein)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-15
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 91
          F+MPLHYP+Y + DY+ M EWKLD +L +YGL   GD+A KR FA+GAFLW S
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLWIS 84

[Close]

BLAST of Carg02571 vs. TAIR10
Match: AT5G55620.1 (unknown protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.7e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0


Query: 38  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEM 93
           FQ+PLHYPKY +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of Carg02571 vs. TAIR10
Match: AT3G09950.1 (unknown protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.4e-12
Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGD--VAQKRKFAMGAFLWP 90
          F+MPLHYP+Y + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of Carg02571 vs. TAIR10
Match: AT3G11405.1 (unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 38  FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPV-AGDVAQKRKFAMGAFLW 89
           FQMPL YP Y +  Y+ M+E +LD LLK YGLP   G+++ K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]

BLAST of Carg02571 vs. TrEMBL
Match: tr|A0A0A0KMG0|A0A0A0KMG0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.0e-30
Identity = 67/93 (72.04%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 1  MSRIMSWVYAARCAVIGAEQXXXXXXXXXVISKQFDHFQMPLHYPKYKRSDYEGMAEWKL 60
          MS IMS   AARC++IG+E            SK FD FQMPLHYP+Y+RSDYEGM EWKL
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRS-------SKAFDQFQMPLHYPRYRRSDYEGMPEWKL 60

Query: 61 DCLLKEYGLPVAGDVAQKRKFAMGAFLWPSEMY 94
          DCLLKEYGLPV GDVAQKRKFAMGAFLWP EMY
Sbjct: 61 DCLLKEYGLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of Carg02571 vs. TrEMBL
Match: tr|A0A2P4N272|A0A2P4N272_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_23692 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.9e-21
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = 0


Query: 32 SKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
          S    HFQMPLHYP+Y++SDYE M EWKLDCLL EYGLPV GDV QKR FAMGAFLWPS+
Sbjct: 26 SNNCHHFQMPLHYPRYRKSDYETMPEWKLDCLLNEYGLPVTGDVTQKRNFAMGAFLWPSQ 85

[Close]

BLAST of Carg02571 vs. TrEMBL
Match: tr|W9RQ09|W9RQ09_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012076 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 45/54 (83.33%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 37 HFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPS 91
          HFQMPLHYPKYKRSDYE M EW+LDCLL+EYGLP+ GD  +KRKFAMGAFLWPS
Sbjct: 33 HFQMPLHYPKYKRSDYETMPEWRLDCLLREYGLPIIGDAEEKRKFAMGAFLWPS 86

[Close]

BLAST of Carg02571 vs. TrEMBL
Match: tr|A0A2N9FY43|A0A2N9FY43_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19947 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.3e-20
Identity = 46/54 (85.19%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 38 FQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 92
          FQMPLHYP+YK+SDYE M EWKLDCLL EYGLPV GDV QKRKFAMGAFLWPS+
Sbjct: 34 FQMPLHYPRYKKSDYETMPEWKLDCLLNEYGLPVTGDVTQKRKFAMGAFLWPSQ 87

[Close]

BLAST of Carg02571 vs. TrEMBL
Match: tr|A0A2P4N274|A0A2P4N274_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_23691 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.7e-20
Identity = 46/60 (76.67%), Postives = 49/60 (81.67%), Query Frame = 0


Query: 32 SKQFDHFQMPLHYPKYKRSDYEGMAEWKLDCLLKEYGLPVAGDVAQKRKFAMGAFLWPSE 91
          S    HFQMPLHYP Y++SDYE M EWKLDCLL EYGLPV GDV QKR FAMGAFLWPS+
Sbjct: 14 SNNCHHFQMPLHYPSYRKSDYETMPEWKLDCLLNEYGLPVTGDVTQKRNFAMGAFLWPSQ 73

The following BLAST results are available for this feature:

BLAST of Carg02571 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022958391.1	3.2e-39	92.47	uncharacterized protein LOC111459627 [Cucurbita moschata]	[more]
KGN50034.1	1.4e-29	72.04	hypothetical protein Csa_5G151500 [Cucumis sativus]	[more]
XP_022146008.1	2.2e-24	80.95	uncharacterized protein LOC111015321 [Momordica charantia]	[more]
XP_011073609.1	1.5e-20	83.64	uncharacterized protein LOC105158521 [Sesamum indicum]	[more]
POF23872.1	1.5e-20	76.67	hypothetical protein CFP56_23692 [Quercus suber]	[more]

BLAST of Carg02571 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41761.1	1.5e-19	70.69	unknown protein	[more]
AT3G55570.1	1.4e-15	62.26	unknown protein	[more]
AT5G55620.1	1.7e-13	54.55	unknown protein	[more]
AT3G09950.1	2.4e-12	55.56	unknown protein	[more]
AT3G11405.1	2.2e-10	55.77	unknown protein	[more]

BLAST of Carg02571 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg02571 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KMG0\|A0A0A0KMG0_CUCSA	9.0e-30	72.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G151500 PE=4 SV=1	[more]
tr\|A0A2P4N272\|A0A2P4N272_QUESU	9.9e-21	76.67	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_23692 PE=4 SV=1	[more]
tr\|W9RQ09\|W9RQ09_9ROSA	1.3e-20	83.33	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012076 PE=4 SV=1	[more]
tr\|A0A2N9FY43\|A0A2N9FY43_FAGSY	1.3e-20	85.19	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS19947 PE=4 SV=1	[more]
tr\|A0A2P4N274\|A0A2P4N274_QUESU	1.7e-20	76.67	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_23691 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg02571-RA	Carg02571-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 21..90
None	No IPR available	PANTHER	PTHR33513:SF12	SUBFAMILY NOT NAMED	coord: 21..90

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg02571	Cla011386	Watermelon (97103) v1	carwmB0925
Carg02571	Csa5G151500	Cucumber (Chinese Long) v2	carcuB0939
Carg02571	MELO3C005736	Melon (DHL92) v3.5.1	carmeB0903
Carg02571	ClCG01G002050	Watermelon (Charleston Gray)	carwcgB0898
Carg02571	CSPI05G04780	Wild cucumber (PI 183967)	carcpiB0961
Carg02571	Cucsa.303740	Cucumber (Gy14) v1	carcgyB1043
Carg02571	CmaCh02G014000	Cucurbita maxima (Rimu)	carcmaB1268
Carg02571	CmoCh02G014330	Cucurbita moschata (Rifu)	carcmoB1237
Carg02571	Lsi09G001890	Bottle gourd (USVL1VR-Ls)	carlsiB836
Carg02571	Cp4.1LG05g02950	Cucurbita pepo (Zucchini)	carcpeB1282
Carg02571	CsGy5G002070	Cucumber (Gy14) v2	carcgybB0912
Carg02571	MELO3C005736.2	Melon (DHL92) v3.6.1	carmedB0910
Carg02571	CsaV3_5G002180	Cucumber (Chinese Long) v3	carcucB0963
Carg02571	Cla97C01G002100	Watermelon (97103) v2	carwmbB0963
Carg02571	Bhi12G000147	Wax gourd	carwgoB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg02571	Watermelon (97103) v1	carwmB0922
Carg02571	Wax gourd	carwgoB1068
Carg02571	Silver-seed gourd	carcarB386
Carg02571	Silver-seed gourd	carcarB448
Carg02571	Cucurbita maxima (Rimu)	carcmaB1261
Carg02571	Cucurbita moschata (Rifu)	carcmoB1230
Carg02571	Cucurbita pepo (Zucchini)	carcpeB1271