ClCG01G002050 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG01G002050
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Gb\|AAF04428.1
Location	CG_Chr01 : 1998371 .. 1998631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGGAATAACGAGCTGTGTCGATGCTGCTCGGTGCTCCGTGATCGGGTCGGAGCATCAGCAGCGATCGAACAAAACATTGGATCAGTTTCAAATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAATTGGACTGCCTACTTAAAGAATATGGTCTACCGGTCACCGGAGACGTCGCTCAGAAGCGAAAGTTCGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTACTGA

mRNA sequence

ATGAATGGAATAACGAGCTGTGTCGATGCTGCTCGGTGCTCCGTGATCGGGTCGGAGCATCAGCAGCGATCGAACAAAACATTGGATCAGTTTCAAATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAATTGGACTGCCTACTTAAAGAATATGGTCTACCGGTCACCGGAGACGTCGCTCAGAAGCGAAAGTTCGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTACTGA

Coding sequence (CDS)

ATGAATGGAATAACGAGCTGTGTCGATGCTGCTCGGTGCTCCGTGATCGGGTCGGAGCATCAGCAGCGATCGAACAAAACATTGGATCAGTTTCAAATGCCTCTTCACTACCCAAGGTACAAGAGGAGTGACTATGAGGGCATGCCGGAGTGGAAATTGGACTGCCTACTTAAAGAATATGGTCTACCGGTCACCGGAGACGTCGCTCAGAAGCGAAAGTTCGCCATGGGAGCTTTCCTTTGGCCTTGTGAAATGTACTGA

Protein sequence

MNGITSCVDAARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFAMGAFLWPCEMY

Homology

[Close]

BLAST of ClCG01G002050 vs. TrEMBL
Match: A0A0A0KMG0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.6e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MNGITSCVDAARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY 60
          M+GI SC DAARCS+IGSEHQQRS+K  DQFQMPLHYPRY+RSDYEGMPEWKLDCLLKEY
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRSSKAFDQFQMPLHYPRYRRSDYEGMPEWKLDCLLKEY 60

Query: 61 GLPVTGDVAQKRKFAMGAFLWPCEMY 87
          GLPV GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 GLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of ClCG01G002050 vs. TrEMBL
Match: A0A067GA15_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034561mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.1e-23
Identity = 52/75 (69.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 10 AARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVA 69
          AA     G  HQ    ++   FQMPLHYPRYK+ DYE MPEWKLDCLLKEYGLPV GDV 
Sbjct: 15 AAELKPYGHHHQAEKRESCCYFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVN 74

Query: 70 QKRKFAMGAFLWPCE 85
          QKR FAMGAFLWP E
Sbjct: 75 QKRDFAMGAFLWPSE 89

[Close]

BLAST of ClCG01G002050 vs. TrEMBL
Match: M5WY50_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014101mg PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-22
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 16 IGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFA 75
          +G   Q   N T  QFQMPLHYPRY++ DYE MPEWKLDCLLK+YGLPV GDV QKRKFA
Sbjct: 17 LGGHDQTSKNNTTCQFQMPLHYPRYQKRDYETMPEWKLDCLLKQYGLPVIGDVNQKRKFA 76

Query: 76 MGAFLWPCE 85
          MGAFLWP +
Sbjct: 77 MGAFLWPSQ 85

[Close]

BLAST of ClCG01G002050 vs. TrEMBL
Match: V4VJ27_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022942mg PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-22
Identity = 52/75 (69.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 10  AARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVA 69
           AA     G  HQ    ++   FQMPLHYPRYK+ DYE MPEWKLDCLLKEYGLPV GDV 
Sbjct: 36  AAELKPNGHHHQAEKRESCCYFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVN 95

Query: 70  QKRKFAMGAFLWPCE 85
           QKR FAMGAFLWP E
Sbjct: 96  QKRDFAMGAFLWPSE 110

[Close]

BLAST of ClCG01G002050 vs. TrEMBL
Match: A0A0D2TCJ5_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G252500 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 3.4e-22
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 10  AARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVA 69
           AAR    G+ HQ +SN     FQMPLHYPRYK+SDYE MPEW+LD LL +YGLP+ GD  
Sbjct: 61  AARVMANGNHHQAKSNDKCCYFQMPLHYPRYKKSDYENMPEWQLDGLLNQYGLPIIGDAN 120

Query: 70  QKRKFAMGAFLWPCEM 86
           QKRKFAMGAFLWP ++
Sbjct: 121 QKRKFAMGAFLWPSQV 136

[Close]

BLAST of ClCG01G002050 vs. TAIR10
Match: AT5G41761.1 (AT5G41761.1 unknown protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-19
Identity = 41/65 (63.08%), Postives = 49/65 (75.38%), Query Frame = 1


Query: 20 HQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFAMGAF 79
          H +  N++   FQ+PLHYP+Y +SDYE MPEW+LD LL+EYGLPV GD  +KRKFA+GAF
Sbjct: 35 HDKPQNQS-SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAF 94

Query: 80 LWPCE 85
          LW  E
Sbjct: 95 LWSSE 98

[Close]

BLAST of ClCG01G002050 vs. TAIR10
Match: AT3G55570.1 (AT3G55570.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-16
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1


Query: 31 FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFAMGAFLW 82
          F+MPLHYPRY + DY+ MPEWKLD +L +YGL   GD+A KR FA+GAFLW
Sbjct: 32 FRMPLHYPRYSKEDYQDMPEWKLDRVLADYGLSTYGDLAHKRDFAIGAFLW 82

[Close]

BLAST of ClCG01G002050 vs. TAIR10
Match: AT5G55620.1 (AT5G55620.1 unknown protein)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-12
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 31  FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFAMGAFLWPCEM 86
           FQ+PLHYP+Y +SDYE M + +LD LLK+YG    G +  KR FA+ +FLWP ++
Sbjct: 47  FQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIESFLWPDQL 101

[Close]

BLAST of ClCG01G002050 vs. TAIR10
Match: AT3G09950.1 (AT3G09950.1 unknown protein)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-12
Identity = 31/54 (57.41%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 31 FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGD--VAQKRKFAMGAFLWP 83
          F+MPLHYPRY + DYE M EW+LD LL EYGL    D  + +KR FA+  F+WP
Sbjct: 36 FKMPLHYPRYTKEDYEEMEEWRLDLLLSEYGLLAFHDNTLHEKRAFAIDTFIWP 89

[Close]

BLAST of ClCG01G002050 vs. TAIR10
Match: AT3G11405.1 (AT3G11405.1 unknown protein)

HSP 1 Score: 60.5 bits (145), Expect = 6.0e-10
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1


Query: 31  FQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPV-TGDVAQKRKFAMGAFLW 82
           FQMPL YP Y +  Y+ M E +LD LLK YGLP   G+++ K++FA+GAFLW
Sbjct: 57  FQMPLQYPNYAKEQYDIMSEEELDRLLKLYGLPTDIGNLSCKKEFAVGAFLW 108

[Close]

BLAST of ClCG01G002050 vs. NCBI nr
Match: gi|659074013|ref|XP_008437375.1| (PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo])

HSP 1 Score: 175.3 bits (443), Expect = 4.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 1


Query: 1  MNGITSCVDAARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY 60
          M+GI SC DAARCS+IGSEHQQRS+K LDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRSSKALDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY 60

Query: 61 GLPVTGDVAQKRKFAMGAFLWPCEMY 87
          GLP+ GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 GLPIVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of ClCG01G002050 vs. NCBI nr
Match: gi|700194857|gb|KGN50034.1| (hypothetical protein Csa_5G151500 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-40
Identity = 77/86 (89.53%), Postives = 81/86 (94.19%), Query Frame = 1


Query: 1  MNGITSCVDAARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEY 60
          M+GI SC DAARCS+IGSEHQQRS+K  DQFQMPLHYPRY+RSDYEGMPEWKLDCLLKEY
Sbjct: 1  MSGIMSCADAARCSMIGSEHQQRSSKAFDQFQMPLHYPRYRRSDYEGMPEWKLDCLLKEY 60

Query: 61 GLPVTGDVAQKRKFAMGAFLWPCEMY 87
          GLPV GDVAQKRKFAMGAFLWPCEMY
Sbjct: 61 GLPVVGDVAQKRKFAMGAFLWPCEMY 86

[Close]

BLAST of ClCG01G002050 vs. NCBI nr
Match: gi|641857704|gb|KDO76449.1| (hypothetical protein CISIN_1g034561mg [Citrus sinensis])

HSP 1 Score: 114.0 bits (284), Expect = 1.3e-22
Identity = 52/75 (69.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 10 AARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVA 69
          AA     G  HQ    ++   FQMPLHYPRYK+ DYE MPEWKLDCLLKEYGLPV GDV 
Sbjct: 15 AAELKPYGHHHQAEKRESCCYFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVN 74

Query: 70 QKRKFAMGAFLWPCE 85
          QKR FAMGAFLWP E
Sbjct: 75 QKRDFAMGAFLWPSE 89

[Close]

BLAST of ClCG01G002050 vs. NCBI nr
Match: gi|595857473|ref|XP_007210551.1| (hypothetical protein PRUPE_ppa014101mg [Prunus persica])

HSP 1 Score: 113.6 bits (283), Expect = 1.7e-22
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 16 IGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVAQKRKFA 75
          +G   Q   N T  QFQMPLHYPRY++ DYE MPEWKLDCLLK+YGLPV GDV QKRKFA
Sbjct: 17 LGGHDQTSKNNTTCQFQMPLHYPRYQKRDYETMPEWKLDCLLKQYGLPVIGDVNQKRKFA 76

Query: 76 MGAFLWPCE 85
          MGAFLWP +
Sbjct: 77 MGAFLWPSQ 85

[Close]

BLAST of ClCG01G002050 vs. NCBI nr
Match: gi|567893832|ref|XP_006439404.1| (hypothetical protein CICLE_v10022942mg [Citrus clementina])

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-22
Identity = 52/75 (69.33%), Postives = 55/75 (73.33%), Query Frame = 1


Query: 10  AARCSVIGSEHQQRSNKTLDQFQMPLHYPRYKRSDYEGMPEWKLDCLLKEYGLPVTGDVA 69
           AA     G  HQ    ++   FQMPLHYPRYK+ DYE MPEWKLDCLLKEYGLPV GDV 
Sbjct: 36  AAELKPNGHHHQAEKRESCCYFQMPLHYPRYKKRDYETMPEWKLDCLLKEYGLPVVGDVN 95

Query: 70  QKRKFAMGAFLWPCE 85
           QKR FAMGAFLWP E
Sbjct: 96  QKRDFAMGAFLWPSE 110

The following BLAST results are available for this feature:

BLAST of ClCG01G002050 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMG0_CUCSA	1.6e-40	89.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G151500 PE=4 SV=1	[more]
A0A067GA15_CITSI	9.1e-23	69.33	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034561mg PE=4 SV=1	[more]
M5WY50_PRUPE	1.2e-22	72.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014101mg PE=4 SV=1	[more]
V4VJ27_9ROSI	1.5e-22	69.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022942mg PE=4 SV=1	[more]
A0A0D2TCJ5_GOSRA	3.4e-22	65.79	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G252500 PE=4 SV=1	[more]

BLAST of ClCG01G002050 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G41761.1	2.4e-19	63.08	unknown protein	[more]
AT3G55570.1	1.9e-16	66.67	unknown protein	[more]
AT5G55620.1	1.3e-12	52.73	unknown protein	[more]
AT3G09950.1	1.7e-12	57.41	unknown protein	[more]
AT3G11405.1	6.0e-10	55.77	unknown protein	[more]

BLAST of ClCG01G002050 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074013\|ref\|XP_008437375.1\|	4.7e-41	90.70	PREDICTED: uncharacterized protein LOC103482807 [Cucumis melo]	[more]
gi\|700194857\|gb\|KGN50034.1\|	2.4e-40	89.53	hypothetical protein Csa_5G151500 [Cucumis sativus]	[more]
gi\|641857704\|gb\|KDO76449.1\|	1.3e-22	69.33	hypothetical protein CISIN_1g034561mg [Citrus sinensis]	[more]
gi\|595857473\|ref\|XP_007210551.1\|	1.7e-22	72.46	hypothetical protein PRUPE_ppa014101mg [Prunus persica]	[more]
gi\|567893832\|ref\|XP_006439404.1\|	2.2e-22	69.33	hypothetical protein CICLE_v10022942mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG01G002050.1	ClCG01G002050.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33513	FAMILY NOT NAMED	coord: 21..82 score: 2.6
None	No IPR available	PANTHER	PTHR33513:SF5	SUBFAMILY NOT NAMED	coord: 21..82 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG01G002050	Csa5G151500	Cucumber (Chinese Long) v2	cuwcgB364
ClCG01G002050	MELO3C005736	Melon (DHL92) v3.5.1	mewcgB018
ClCG01G002050	Cla011386	Watermelon (97103) v1	wcgwmB142
ClCG01G002050	Cla97C01G002100	Watermelon (97103) v2	wcgwmbB089
ClCG01G002050	Bhi12G000147	Wax gourd	wcgwgoB192
ClCG01G002050	CSPI05G04780	Wild cucumber (PI 183967)	cpiwcgB379
ClCG01G002050	Cucsa.303740	Cucumber (Gy14) v1	cgywcgB520
ClCG01G002050	CmaCh02G014000	Cucurbita maxima (Rimu)	cmawcgB518
ClCG01G002050	CmoCh02G014330	Cucurbita moschata (Rifu)	cmowcgB516
ClCG01G002050	Lsi09G001890	Bottle gourd (USVL1VR-Ls)	lsiwcgB008
ClCG01G002050	Cp4.1LG05g02950	Cucurbita pepo (Zucchini)	cpewcgB639
ClCG01G002050	CsGy5G002070	Cucumber (Gy14) v2	cgybwcgB332
ClCG01G002050	MELO3C005736.2	Melon (DHL92) v3.6.1	medwcgB016
ClCG01G002050	Carg02571	Silver-seed gourd	carwcgB0898
ClCG01G002050	CsaV3_5G002180	Cucumber (Chinese Long) v3	cucwcgB385

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG01G002050	Melon (DHL92) v3.5.1	mewcgB085
ClCG01G002050	Melon (DHL92) v3.5.1	mewcgB421
ClCG01G002050	Melon (DHL92) v3.5.1	mewcgB467
ClCG01G002050	Watermelon (97103) v1	wcgwmB127
ClCG01G002050	Watermelon (97103) v1	wcgwmB152
ClCG01G002050	Cucurbita pepo (Zucchini)	cpewcgB165
ClCG01G002050	Bottle gourd (USVL1VR-Ls)	lsiwcgB326
ClCG01G002050	Bottle gourd (USVL1VR-Ls)	lsiwcgB397
ClCG01G002050	Cucumber (Gy14) v2	cgybwcgB267
ClCG01G002050	Melon (DHL92) v3.6.1	medwcgB461
ClCG01G002050	Silver-seed gourd	carwcgB0044
ClCG01G002050	Silver-seed gourd	carwcgB0352
ClCG01G002050	Silver-seed gourd	carwcgB0575
ClCG01G002050	Cucumber (Chinese Long) v3	cucwcgB299
ClCG01G002050	Watermelon (97103) v2	wcgwmbB119
ClCG01G002050	Wax gourd	wcgwgoB211
ClCG01G002050	Watermelon (Charleston Gray)	wcgwcgB084
ClCG01G002050	Watermelon (Charleston Gray)	wcgwcgB105
ClCG01G002050	Watermelon (Charleston Gray)	wcgwcgB111
ClCG01G002050	Cucurbita moschata (Rifu)	cmowcgB247
ClCG01G002050	Cucumber (Gy14) v1	cgywcgB147
ClCG01G002050	Cucumber (Gy14) v1	cgywcgB225
ClCG01G002050	Cucurbita maxima (Rimu)	cmawcgB259
ClCG01G002050	Cucurbita maxima (Rimu)	cmawcgB290
ClCG01G002050	Cucurbita maxima (Rimu)	cmawcgB635
ClCG01G002050	Cucurbita moschata (Rifu)	cmowcgB284
ClCG01G002050	Cucurbita moschata (Rifu)	cmowcgB637
ClCG01G002050	Wild cucumber (PI 183967)	cpiwcgB299
ClCG01G002050	Cucumber (Chinese Long) v2	cuwcgB206
ClCG01G002050	Cucumber (Chinese Long) v2	cuwcgB289
ClCG01G002050	Cucumber (Chinese Long) v2	cuwcgB434