CmoCh02G013700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G013700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Large subunit rib
Location	Cmo_Chr02 : 8121695 .. 8125108 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGCGTCGGCGAGGGCGTCACTTGTGGCGGAGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTAGAAAGTAGGTGTTGAGATGGAAATATGTATTGAAATTACTTTATAGACAAACAAACCCGGTTCATAAAAAATTATTAGCTCGCTTCGTCTTGTCAGTGATTTATTTCCTACGTTAAAGGTTGTAATTTATTAGTGTACTCGGGTTGAATTGAATTTTTTTTAATAAAATTTTATAAAATTCAAATATCAAACATTTACAAGCTACTGTGGATTACTAACATATGTTACAAAAATTTCTTAATTATTGTTCGGGTTTTGTTACGAACCATATTTTTAAATAATCAGGTTGACCTGATTAAAAAATCTACCGTTCATAATTGAACCGAGCACAGGTTAATTATGGATTATACGAAAGAATTACATTTAATTATATAGTTTTTGAGCTATATTACTAAATTTTGTGAGCAAACGTTATTATTTGATAATTATTTATACCACGTGTTAATTACGTATTATATGAGAATCTATTTAAGTTTAATTGCTTATTATAAAATTTTGAAAGTACAATAACTAAATAAAATACATATGGTAGAAAAACGAGCCCTCAAGGCCCATGTTCAAGGCCCATTGGACAACAAGTTTGGCCAATATTGGGCCCAATATGAACATGGCCGTACAGCCCGGCCCATGATCGTGTTCGCAAAATTACGGTCCTCCTATCATAGGTTTATCACCGCGCCTTCTTTTTGGATCGCATCTCTTCGGTCGTCCATTATATATCTATTGTCAGCTGCCGTCGAAAAACCCTAGCTTAGCTTCTTCTCACCAGGTACGAATCTACACTCTTTCGAACTGAGATTTATTTTTGTTGAAACTGCTACTTAATTCTATTGCGCTGCGGCATTTTTTTTCGTCTTGTTTGTTCTTCCTTAATTTGATATTCAGTTCTTGTTTATCTCTATCTTGTATTTTTTACTCGTGTGGTTGTTCGTTTACTTCGTGTTTTGATTAGGTTTGTTCCTTTTTTCTTCTTTTCAGTGAGTCTGTAGCTGCTCCTTGAAAAGAAAGGGTTCCGAAAATGAGGTATGTCGAACTGTTTTTCCTTATAGTTTATATACTGTTCAGAATCTTGTTTAGAACACGATTTTGATTAGTGCTTCTGCGGCTGTTTATGTTAAATATGCCGTGGCTATAAATTTAGTTCGCGTTCTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCGTAAGAATTTATATGCCGTGGCTATAAATTTAGTTCTCATTCTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCGTTGGAATTTATATGCTGTGGCTATAAATTTAGTTCGCATTCTTTTCTCCTGGAAAATTTGGAAGTATGAAGTAGGAATTTACTTGAGCTATATTTTGAAGAGTTCATGTTTCTACCAATTCTGGAGTTTACAATACTTGTTCATACGTTTATAATAAATTGAAATTTTGTTTATTGGAGGCTTTTGGTTTGTATCAGTTGCGTTACGTGTTTTTTTGAATTTACTGAATGTAGTTTTGCTGGTTTATATCTGCAGCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGTAGGCTTTATATTCTCGTAACCTTTCCACTTGTCTTGTCCAGTTACTGTTGTCCTTGTTTTTTCTTCTGTGTGGAGTGATGACTCTTTATTTTTTGGGTAATCTGATCTGGCTAGCTTCTCAACTCTAATAGTACTATTTTGTGTGAGGCTTGGTGTATTTTATGTCATAATCCTACTAGCTACCGTGTTTAAGAATATTTATGAAGTTTTCAACGGCAATTAGATCTGGATAATAAGTTTATGGTCGTTTCCATTTGTGTTCTATAGGCATGATGCTGAATTCTGTATGAGCATTATAAGTGACTTCGTACTTGTTGTGGAAAACAATATACTTTAGCATTTCATGCATAGTAAATAGAAATTTCTAAACTGTTGTACGTCAGCTCTATCCGTTTACTAAAATGTGCGGATGCTTATTCTAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTTTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGTTCTGAACTACTAGACATCCGGAATTTACCCTTTTGATCGTTAGTAAGTTCTTGTTAGTTTTATCGTCGTGGTGATGCAAGCTAGTGGCATCTGAAAGGCTCTCGATAGACTGCATGCTTGTAAATTGAATTCCTATCTTTTCTTTTGAAAATGCTGTTTTGTTTTGCACAGCTCACATAAGTAAGTCATATTTTCGTAGTTCTTACTAACATCGACATGTACATTGTCGTTACAGGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCTAAAGTCAACGAGACAAAGGCAATGGTTAAGTTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTAAGTCACTGGCATACTTTCCCCCCATGTCATTTTAGTTCTTTGATTATAATCACACCTTCGTATTTTGATTAAAGAACATACTAACACATAATCAATCCTTGTCCTTGTGTCGACTTATGGAGATTGGATGTTTCTTCTTGTTCATCAGGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGAGAACTTTTCAAATTTTAGATAGTACTGTTTGCTCTTTCGTTTAAGAACCAACCAGGTTGAGGTGAAGTTCTATATTATGATTGGTAAAAGTTTTCCTGTTTATTTTTCTTTTATTTATTTTTTGTTTAGCACAACAAAACCATTAGCTGCACAATCTTTAACACTCGTGATGGGAGTAATGTTTTCTTCTTTCCTTTTGTTCTCTTATGTTTTGTAGATTTTTTTTTTCAATTTATAATATATTCAATTAATAATTCAAA

mRNA sequence

ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGCGTCGGCGAGGGCGTCACTTGTGGCGGAGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTAGAAAGTAGTGCTTCTGCGGCTGTTTATGTTAAATATGCCGTGGCTATAAATTTAGTTCGCGTTCTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTTTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCTAAAGTCAACGAGACAAAGGCAATGGTTAAGTTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGAGAACTTTTCAAATTTTAGATAGTACTGTTTGCTCTTTCGTTTAAGAACCAACCAGGTTGAGGTGAAGTTCTATATTATGATTGGTAAAAGTTTTCCTGTTTATTTTTCTTTTATTTATTTTTTGTTTAGCACAACAAAACCATTAGCTGCACAATCTTTAACACTCGTGATGGGAGTAATGTTTTCTTCTTTCCTTTTGTTCTCTTATGTTTTGTAGATTTTTTTTTTCAATTTATAATATATTCAATTAATAATTCAAA

Coding sequence (CDS)

ATGGTGCCGGAGAAATGGGGGAAAGAAGAGTTGCTAAAGGACTGGATAGACTACTCGACCTTCGATAGAATCTTGACTGCTGACAGAATCGCGTCGGCGAGGGCGTCACTTGTGGCGGAGGGGCGGCGGAGCAGCCCCCGATCCAGTTCACGGTCACCGTTGAGGGTAGAAAGTAGTGCTTCTGCGGCTGTTTATGTTAAATATGCCGTGGCTATAAATTTAGTTCGCGTTCTTTTCTCCTGGAAGATTTGGAAGTATGAAGTTGCATCCAAACTTCAGAGTGAAGCGTTGAGAGAAGCCATTTCATCTATCTTTGGTGATAGCACTGAAAAGAAGCGCAACTTTACTGAGACTATTGAACTTCAGATTGGACTGAAGAACTATGATCCTCAGAAGGACAAGCGTTTCAGTGGATCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGCTTTGCATGCTTGGAGATGCTTTGCACGTTGAAGAGGCAGAGAAGATTGGTATGGATTATATGGATGTGGAAGGTTTGAAGAAGCTAAACAAGAACAAGAAGTTGGTGAAGAAACTTGCCAAGAAATATCATGCCTTTTTGGCATCTGAAGCTGTTATCAAGCAAATTCCCCGTCTTTTGGGCCCTGGGCTCAACAAGGCAGGCAAGTGTAAGTTCCCTACCCTGGTTACTCACCAAGAATCCCTCGAGTCTAAAGTCAACGAGACAAAGGCAATGGTTAAGTTTCAGCTAAAAAAGGTTCTTTGCATGGGTGTTGCCGTCGGTAACGTCGCCATGGAGGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCCTTGTTGAAAAAGAATTGGCAAAACGTGAGGTGCTTGTACCTGAAGAGTACTATGGGAAAGGCATATCGAGTCTTCTGA

Homology

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BLAST of CmoCh02G013700 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 7.0e-103
Identity = 190/217 (87.56%), Postives = 203/217 (93.55%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPR
Sbjct: 62  MKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ 
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQ 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QN+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 182 QNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

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BLAST of CmoCh02G013700 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 7.0e-103
Identity = 190/217 (87.56%), Postives = 203/217 (93.55%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSE L+EAIS + G+S EK R FTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKK+NKNKKLVKKLAKKYHAFLASEA+IKQIPR
Sbjct: 62  MKVCMLGDAQHVEEAEKIGLDYMDVEALKKMNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+ 
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIQ 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QN+QMSVNFLVSLLKKNWQNVRCLY+KSTMGK  RVF
Sbjct: 182 QNIQMSVNFLVSLLKKNWQNVRCLYIKSTMGKPIRVF 216

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BLAST of CmoCh02G013700 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.7e-101
Identity = 190/217 (87.56%), Postives = 203/217 (93.55%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEK+G++ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

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BLAST of CmoCh02G013700 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 1.5e-100
Identity = 188/217 (86.64%), Postives = 202/217 (93.09%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEK+G+  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

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BLAST of CmoCh02G013700 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 7.2e-100
Identity = 191/218 (87.61%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKK-RNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 149
           SKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2   SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 150 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 209
           KMK+CMLGDA HVEEAEKIG++ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQIP
Sbjct: 62  KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121

Query: 210 RLLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 269
           RLLGPGLNKAG  KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+
Sbjct: 122 RLLGPGLNKAG--KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 181

Query: 270 FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 182 FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

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BLAST of CmoCh02G013700 vs. TrEMBL
Match: F6HHG2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00400 PE=4 SV=1)

HSP 1 Score: 429.9 bits (1104), Expect = 2.7e-117
Identity = 231/317 (72.87%), Postives = 263/317 (82.97%), Query Frame = 1


Query: 1   MVPEKWGKEELLKDWIDYSTFDRILTADRIASARASLVAEGRRSSPRSSSRSPLRVESSA 60
           ++P+KWGKE+LLK+WIDYS+FD +L  + I  AR +LVA GR +S +      LR+ S  
Sbjct: 73  LIPDKWGKEDLLKEWIDYSSFDALLAPNGIGVAREALVAAGRGASTQG-----LRISSRL 132

Query: 61  SAAVYVKYAVAINLVRVLFSWKIWKYE-----------VASKLQSEALREAISSIFGDST 120
           +A V+   +    +V  L   + +K+E             +KLQS+ALREAI++I  +S 
Sbjct: 133 AARVFFISSGKKPVVDPL-EGRGFKHERSVHPTWINEDAGAKLQSDALREAITNIVNESK 192

Query: 121 EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKLCMLGDALHVEEAEKIGM 180
           EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMK+CMLGDA HVEEAEKIG+
Sbjct: 193 EKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGL 252

Query: 181 DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKCKFPTLVTH 240
           +YMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGK  FPTLVTH
Sbjct: 253 EYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKKIFPTLVTH 312

Query: 241 QESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVFQNVQMSVNFLVSLLKKNWQN 300
           QESLESKVNETKAMVKFQLKKVLCMGVAVGN +MEEKQ+FQNVQ+SVNFLVSLLKKNWQN
Sbjct: 313 QESLESKVNETKAMVKFQLKKVLCMGVAVGNCSMEEKQIFQNVQLSVNFLVSLLKKNWQN 372

Query: 301 VRCLYLKSTMGKAYRVF 307
           VRCLYLKSTMG++ RVF
Sbjct: 373 VRCLYLKSTMGRSNRVF 383

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BLAST of CmoCh02G013700 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.3e-108
Identity = 206/217 (94.93%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIPR
Sbjct: 62  MKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVF
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

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BLAST of CmoCh02G013700 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 2.1e-106
Identity = 200/217 (92.17%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA H+EEAEKIG++YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE++IKQIPR
Sbjct: 62  MKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQVF
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

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BLAST of CmoCh02G013700 vs. TrEMBL
Match: V7BVM2_PHAVU (Ribosomal protein OS=Phaseolus vulgaris GN=PHAVU_005G123700g PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 8.0e-106
Identity = 200/217 (92.17%), Postives = 208/217 (95.85%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAIS I GDS EK RNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. TrEMBL
Match: A0A0S3SGW2_PHAAN (Ribosomal protein OS=Vigna angularis var. angularis GN=Vigan.07G074200 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 8.0e-106
Identity = 200/217 (92.17%), Postives = 208/217 (95.85%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAI+ I GDS EK RNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAITGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV+MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 370.5 bits (950), Expect = 9.7e-103
Identity = 190/217 (87.56%), Postives = 203/217 (93.55%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSEA+REAI++I G S  KKRNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEK+G++ MDVE LKKLNKNKKLVKKLAKKYHAFLASE+VIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKMGLENMDVESLKKLNKNKKLVKKLAKKYHAFLASESVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of CmoCh02G013700 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 367.5 bits (942), Expect = 8.2e-102
Identity = 188/217 (86.64%), Postives = 202/217 (93.09%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQSEA+REAI++I G S EKKRNF ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEK+G+  MDVE LKKLNKNKKLVKKLAK YHAFLASE+VIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKMGLSNMDVEALKKLNKNKKLVKKLAKSYHAFLASESVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLV+HQESLE+KVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVSHQESLEAKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQLF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   R+F
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPQRIF 216

[Close]

BLAST of CmoCh02G013700 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 365.2 bits (936), Expect = 4.1e-101
Identity = 191/218 (87.61%), Postives = 202/218 (92.66%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKK-RNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 149
           SKLQSEA+REAISSI     E K RNFTETIELQIGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2   SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 150 KMKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIP 209
           KMK+CMLGDA HVEEAEKIG++ MDVE LKKLNKNKKLVKKLAKK+HAFLASE+VIKQIP
Sbjct: 62  KMKICMLGDAQHVEEAEKIGLESMDVEALKKLNKNKKLVKKLAKKFHAFLASESVIKQIP 121

Query: 210 RLLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQV 269
           RLLGPGLNKAG  KFPTLV+HQESLESKVNETKA VKFQLKKVLCMGVAVGN++MEEKQ+
Sbjct: 122 RLLGPGLNKAG--KFPTLVSHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQI 181

Query: 270 FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG   RVF
Sbjct: 182 FQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPPNRVF 217

[Close]

BLAST of CmoCh02G013700 vs. TAIR10
Match: AT3G52740.1 (AT3G52740.1 unknown protein)

HSP 1 Score: 57.4 bits (137), Expect = 1.8e-08
Identity = 28/47 (59.57%), Postives = 34/47 (72.34%), Query Frame = 1


Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIASARASLVAEGRRSSPRS 49
           +PE WG+EELLKDWID STFD  L    I+SAR +LV E RR++  S
Sbjct: 83  IPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAASAS 129

[Close]

BLAST of CmoCh02G013700 vs. TAIR10
Match: AT3G44450.1 (AT3G44450.1 unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-08
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 2   VPEKWGKEELLKDWIDYSTFDRILTADRIASARASLVAE-GRRSSPRSSSRSPLRVESS 60
           +P+ WGKE LL  W+D+STFD   T+ +I SARA+L+A+ G  +  R S    LRVESS
Sbjct: 57  IPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDAGARGSRPQRLRVESS 115

[Close]

BLAST of CmoCh02G013700 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 401.0 bits (1029), Expect = 1.9e-108
Identity = 206/217 (94.93%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEA+IKQIPR
Sbjct: 62  MKICMLGDASHVEEAEKIGLDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGN+AMEEKQVF
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNIAMEEKQVF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 3.0e-106
Identity = 200/217 (92.17%), Postives = 211/217 (97.24%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA H+EEAEKIG++YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE++IKQIPR
Sbjct: 62  MKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQE+LESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQVF
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQETLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQVF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. NCBI nr
Match: gi|950957087|ref|XP_014496985.1| (PREDICTED: 60S ribosomal protein L10a [Vigna radiata var. radiata])

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105
Identity = 200/217 (92.17%), Postives = 208/217 (95.85%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAI+ I GDS EK RNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAITGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV+MEEKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. NCBI nr
Match: gi|593699206|ref|XP_007150068.1| (hypothetical protein PHAVU_005G123700g [Phaseolus vulgaris])

HSP 1 Score: 391.7 bits (1005), Expect = 1.1e-105
Identity = 200/217 (92.17%), Postives = 208/217 (95.85%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAIS I GDS EK RNF ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA HVEEAEKIG+DYMDVE LKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR
Sbjct: 62  MKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNV+M+EKQ+F
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMDEKQIF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQ+SVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

[Close]

BLAST of CmoCh02G013700 vs. NCBI nr
Match: gi|659071695|ref|XP_008461453.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo])

HSP 1 Score: 391.3 bits (1004), Expect = 1.5e-105
Identity = 199/217 (91.71%), Postives = 210/217 (96.77%), Query Frame = 1


Query: 90  SKLQSEALREAISSIFGDSTEKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 149
           SKLQS+ALREAISSIF DS EKKR FTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2   SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 150 MKLCMLGDALHVEEAEKIGMDYMDVEGLKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPR 209
           MK+CMLGDA H+EEAEKIG++YMDVEGLKKLNKNKKLVKKLAKKYHAFLASE++IKQIPR
Sbjct: 62  MKICMLGDASHIEEAEKIGLEYMDVEGLKKLNKNKKLVKKLAKKYHAFLASESIIKQIPR 121

Query: 210 LLGPGLNKAGKCKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVAMEEKQVF 269
           LLGPGLNKAG  KFPTLVTHQE+LESKVNETKA VKFQLKKVLCMGVAVGNV+M+EKQVF
Sbjct: 122 LLGPGLNKAG--KFPTLVTHQETLESKVNETKATVKFQLKKVLCMGVAVGNVSMDEKQVF 181

Query: 270 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKAYRVF 307
           QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGK+YRVF
Sbjct: 182 QNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216

The following BLAST results are available for this feature:

BLAST of CmoCh02G013700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R10A_ORYSJ	7.0e-103	87.56	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1	[more]
R10A_ORYSI	7.0e-103	87.56	60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1	[more]
R10A1_ARATH	1.7e-101	87.56	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1	[more]
R10A2_ARATH	1.5e-100	86.64	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1	[more]
R10A3_ARATH	7.2e-100	87.61	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1	[more]

BLAST of CmoCh02G013700 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HHG2_VITVI	2.7e-117	72.87	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00400 PE=4 SV=...	[more]
A0A0A0KEW8_CUCSA	1.3e-108	94.93	Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1	[more]
A0A0A0LVE6_CUCSA	2.1e-106	92.17	Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1	[more]
V7BVM2_PHAVU	8.0e-106	92.17	Ribosomal protein OS=Phaseolus vulgaris GN=PHAVU_005G123700g PE=3 SV=1	[more]
A0A0S3SGW2_PHAAN	8.0e-106	92.17	Ribosomal protein OS=Vigna angularis var. angularis GN=Vigan.07G074200 PE=3 SV=1	[more]

BLAST of CmoCh02G013700 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G08360.1	9.7e-103	87.56	Ribosomal protein L1p/L10e family	[more]
AT2G27530.1	8.2e-102	86.64	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	4.1e-101	87.61	Ribosomal protein L1p/L10e family	[more]
AT3G52740.1	1.8e-08	59.57	unknown protein	[more]
AT3G44450.1	2.4e-08	50.85	unknown protein	[more]

BLAST of CmoCh02G013700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117410\|ref\|XP_008458587.1\|	1.9e-108	94.93	PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo]	[more]
gi\|449443440\|ref\|XP_004139485.1\|	3.0e-106	92.17	PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus]	[more]
gi\|950957087\|ref\|XP_014496985.1\|	1.1e-105	92.17	PREDICTED: 60S ribosomal protein L10a [Vigna radiata var. radiata]	[more]
gi\|593699206\|ref\|XP_007150068.1\|	1.1e-105	92.17	hypothetical protein PHAVU_005G123700g [Phaseolus vulgaris]	[more]
gi\|659071695\|ref\|XP_008461453.1\|	1.5e-105	91.71	PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR016095	Ribosomal_L1_3-a/b-sand
IPR023674	Ribosomal_L1-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
biological_process	GO:0008150	biological_process
biological_process	GO:0006325	chromatin organization
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000470	maturation of LSU-rRNA
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G013700.1	CmoCh02G013700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016094	Ribosomal protein L1, 2-layer alpha/beta-sandwich	GENE3D	G3DSA:3.30.190.20		coord: 94..148 score: 5.7E-48coord: 242..305 score: 5.7
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	G3DSA:3.40.50.790		coord: 150..241 score: 8.5
IPR023674	Ribosomal protein L1-like	unknown	SSF56808	Ribosomal protein L1	coord: 110..306 score: 1.01
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 15..306 score: 7.2E
None	No IPR available	PANTHER	PTHR23105:SF55	SUBFAMILY NOT NAMED	coord: 15..306 score: 7.2E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G013700	Cucsa.385140	Cucumber (Gy14) v1	cgycmoB1066
CmoCh02G013700	CmaCh13G003060	Cucurbita maxima (Rimu)	cmacmoB234
CmoCh02G013700	CmaCh20G001710	Cucurbita maxima (Rimu)	cmacmoB555
CmoCh02G013700	CmaCh02G013300	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G013700	Cla008651	Watermelon (97103) v1	cmowmB585
CmoCh02G013700	Csa1G163140	Cucumber (Chinese Long) v2	cmocuB569
CmoCh02G013700	Csa6G152330	Cucumber (Chinese Long) v2	cmocuB621
CmoCh02G013700	MELO3C021429	Melon (DHL92) v3.5.1	cmomeB537
CmoCh02G013700	ClCG02G022120	Watermelon (Charleston Gray)	cmowcgB538
CmoCh02G013700	CSPI06G12510	Wild cucumber (PI 183967)	cmocpiB628
CmoCh02G013700	Lsi10G011670	Bottle gourd (USVL1VR-Ls)	cmolsiB525
CmoCh02G013700	Cp4.1LG16g08160	Cucurbita pepo (Zucchini)	cmocpeB576
CmoCh02G013700	Cp4.1LG05g03990	Cucurbita pepo (Zucchini)	cmocpeB594
CmoCh02G013700	MELO3C021429.2	Melon (DHL92) v3.6.1	cmomedB615
CmoCh02G013700	CsaV3_6G014960	Cucumber (Chinese Long) v3	cmocucB0741
CmoCh02G013700	Cla97C02G048190	Watermelon (97103) v2	cmowmbB602
CmoCh02G013700	Cla97C01G011580	Watermelon (97103) v2	cmowmbB578
CmoCh02G013700	Bhi10G000032	Wax gourd	cmowgoB0738
CmoCh02G013700	CsGy6G012540	Cucumber (Gy14) v2	cgybcmoB799
CmoCh02G013700	CsGy1G014580	Cucumber (Gy14) v2	cgybcmoB113
CmoCh02G013700	Carg02630	Silver-seed gourd	carcmoB1237
CmoCh02G013700	Carg18431	Silver-seed gourd	carcmoB0560

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh02G013700	CmoCh20G001870	Cucurbita moschata (Rifu)	cmocmoB405

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G013700	Cucumber (Gy14) v2	cgybcmoB808
CmoCh02G013700	Melon (DHL92) v3.6.1	cmomedB658
CmoCh02G013700	Silver-seed gourd	carcmoB0335
CmoCh02G013700	Cucumber (Chinese Long) v3	cmocucB0748
CmoCh02G013700	Watermelon (97103) v2	cmowmbB620
CmoCh02G013700	Cucurbita moschata (Rifu)	cmocmoB430
CmoCh02G013700	Cucurbita moschata (Rifu)	cmocmoB443
CmoCh02G013700	Cucumber (Gy14) v1	cgycmoB0147
CmoCh02G013700	Cucurbita maxima (Rimu)	cmacmoB651
CmoCh02G013700	Cucurbita maxima (Rimu)	cmacmoB856
CmoCh02G013700	Wild cucumber (PI 183967)	cmocpiB639
CmoCh02G013700	Cucumber (Chinese Long) v2	cmocuB630
CmoCh02G013700	Melon (DHL92) v3.5.1	cmomeB574
CmoCh02G013700	Watermelon (Charleston Gray)	cmowcgB556
CmoCh02G013700	Watermelon (97103) v1	cmowmB576
CmoCh02G013700	Cucurbita pepo (Zucchini)	cmocpeB585
CmoCh02G013700	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G013700	Bottle gourd (USVL1VR-Ls)	cmolsiB546