CsGy6G012540 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G012540
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Description60S ribosomal protein L10a
LocationChr6 : 10894749 .. 10897279 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCGATTGTCGTCCATCTACAAGCCTAAGGCCCACTGGACTACAAATTGGGCCAAAATCGGCCCAATCTACACTAAAAAAAGGCCCAAGCCCATTACTGTAGCAAAACTGCATAACCTAGGTTTATCATCATCGGCCCTTCTTTCTTCATCGCCTCCCTTCGTTCTTCCATTATATATTTATTCTCTGTTCGGCCGTCGAAAAACCCTAGCTTCCTGTCTTCTCACCAGGTACTCACCCATCCTTGTTCTTCTATCCTATGTTTATTTTGTTGAACCTGCTACTCGATTCTCCATTATTGCAACTATTTTACTCTTCTTTCTTCTTTCTTCTTCCTTCAATCTGATCTTCAGTTCTTGCGTATTCTTCATTCGATTTGGTTTGGTTAGTCTGTTTGTTATAATTGTAGTTTATTGTTTTTTTTGTTTTCTTCTCACCAGTTTGTAGCTACTTCTTGGGAAAGACAAAGCTCCGAAAATGAGGTATGTAGTTTTTATTCACCGTTCAGATTCTGCTGTTTTTCAGAATGAATTTGATTATTGCTTCCGTTGTTGTTATCTAATTTGCGAATTCATAAAGTTTGTTCTTGTTATTTATTTCTGCCAGTAATCTAAATATTTGATTGAGGTAGATTTAGAAGTATGTAGATGGTAGTACTGGAATTTTCTTAGGGTTGTAGTTTAATGGGTTTAGGGTTGTTGGAGGCTTTGGTTGCTGATGGGTTTGTTGGTTTGTATGTACAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGTAAACTTAATCTCCTCTTTTACATATTCACTTAATACTTGTTATGCCCAGTTACTGTTGTCCTTGGTTTTTTCCCCGTAGAGGACTACTAGTTTGTATGTTTCTTGCTTGTTGGAGTTTTGCTTGATAATGTGTGATGTACTTTATGAAACATCTCGGTGGTTGGTACATTTGAATTAAGTTTATAGTTTGCAGGGTCTTCTATTTGTGCCTTAAAATTTAATGGGTATGGTGTTGAATTCTTCATCAAGAGTATTTGTGAGTTTATACTCATCTTGGAAAATAATGTACTTTTTTGGCATTTCATGGGATGGTAGATTCAAATTAAAGACTTACACATACACTATAACTTTGTTCTTTTACTGAATATGTGTATGCATATTATAGGCAGAGAAGATTGGTTTGGATTATATGGATGTTGAAGGTCTGAAGAAGCTAAACAAAAACAAGAAGTTGGTTAAGAAACTTGCCAAGAAATACCATGCCTTTTTAGCATCTGAAGCTATTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGTCTCAACAAGGCAGGCAAGTGAGCTTATGACTAACAGACCTGGAATTTTATCCTTGATCTCGTGACTCAAGTTAGAAAGTTTTTCTTAGCTCTATTGATTCTTGTACAAAAGTTTTCTCAGCTCTATTGGTTGTTTATAGTGGTGATGAAGTGAATGCATTTTTAACCTTTTACTTCATGATTTACTTTCTGTTTAAGCTTAAGTTGTTTTAACTTTGTACTTCATTTCTGACACTTCAATTTTGAATTTTAATCTATTTTCATTTTGTAGTTTGTACTAACATTGGCATTGAAATTTTGATTACAGGAAAGTTCCCTACCCTGGTCACTCATCAAGAATCTCTTGAATCTAAAGTAAATGAGACTAAGGCAATGGTTAAGTTCCAATTGAAGAAGGTTCTTTGTATGGGTGTGGCCGTTGGCAATATTGCCATGGAAGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCTTTGTTGAAAAAGAATTGGCAAAATGTAAGTCACGGGACATACTTTTCCCTCCATGTTATTTTAGTCTGTTATCTTCTGTTTATGCAACAAGCATACTCCTAGGCTTGTCTTTTTTCATTTACTAACACGATTTATAATGCTTCTCAATACTCAATGAAGCATTGCTCTTTTATCTAATAATAATAGGATTTTATTGTTCTGATCAGGTGAGGTGCTTGTACCTGAAGAGTACAATGGGGAAGGCATATCGAGTCTTCTGAGGAATTTTCATAACCTAGATAGTTCTGTTTGTTTGTTCTTAAATCGAAGAAGTTGAGATAAGATTTCTATATTTATGATTGATGAAAAATTTTCCTGTTTGTTTCCTTTTAGTAAACCATTAGCTGCACAATCGTCAACACTTATGATGGGAGTAATGTGTTTTTTTGTTTCACTCTATATGTTCTGTAGATTTTTGTTTCAATTTATTTGATTATTGCTTAGTTTCAATTAAAGAACATCTAATCAGTTTGTGCAGGGGCTTCCAGTTATTCAAAATTAA

mRNA sequence

ATCGATTGTCGTCCATCTACAAGCCTAAGGCCCACTGGACTACAAATTGGGCCAAAATCGGCCCAATCTACACTAAAAAAAGGCCCAAGCCCATTACTGTAGCAAAACTGCATAACCTAGGTTTATCATCATCGGCCCTTCTTTCTTCATCGCCTCCCTTCGTTCTTCCATTATATATTTATTCTCTGTTCGGCCGTCGAAAAACCCTAGCTTCCTGTCTTCTCACCAGTTTGTAGCTACTTCTTGGGAAAGACAAAGCTCCGAAAATGAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGGGCTTCCAGTTATTCAAAATTAA

Coding sequence (CDS)

ATGAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGGGCTTCCAGTTATTCAAAATTAA

Protein sequence

MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDASHVEEGLPVIQN
Homology
[Close]
BLAST of CsGy6G012540 vs. NCBI nr
Match: XP_008458587.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] >KGN46947.1 hypothetical protein Csa_6G152330 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASHVEE
Sbjct: 61 KMKICMLGDASHVEE 75

[Close]
BLAST of CsGy6G012540 vs. NCBI nr
Match: XP_004139485.1 (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetical protein Csa_1G163140 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASH+EE
Sbjct: 61 KMKICMLGDASHIEE 75

[Close]
BLAST of CsGy6G012540 vs. NCBI nr
Match: XP_008461453.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASH+EE
Sbjct: 61 KMKICMLGDASHIEE 75

[Close]
BLAST of CsGy6G012540 vs. NCBI nr
Match: XP_022142655.1 (60S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal protein L10a [Momordica charantia])

HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAI+SIF+DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAITSIFSDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDALHVEE 75

[Close]
BLAST of CsGy6G012540 vs. NCBI nr
Match: XP_022153072.1 (60S ribosomal protein L10a-like [Momordica charantia] >XP_022153073.1 60S ribosomal protein L10a-like [Momordica charantia])

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAIS+IF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISAIFVDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDALHVEE 75

[Close]
BLAST of CsGy6G012540 vs. TAIR10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 130.2 bits (326), Expect = 5.9e-31
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. TAIR10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 128.6 bits (322), Expect = 1.7e-30
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. TAIR10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 126.7 bits (317), Expect = 6.5e-30
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGE-KKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MSKLQS+A+REAISSI     E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1  MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61 PKMKICMLGDASHVEE 76
          PKMKICMLGDA HVEE
Sbjct: 61 PKMKICMLGDAQHVEE 76

[Close]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match: sp|B8B9K6|R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-30
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMK+CMLGDA HVEE
Sbjct: 61 KMKVCMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match: sp|B7F845|R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 3.7e-30
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+ L+EAIS +  +S EK RKFTET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMK+CMLGDA HVEE
Sbjct: 61 KMKVCMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match: sp|P59230|R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.1e-29
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+A+REAI++I   S EKKR F ET+ELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match: sp|Q8VZB9|R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQS+A+REAI++I   S  KKR F ETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDA HVEE
Sbjct: 61 KMKICMLGDAQHVEE 75

[Close]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match: sp|P59231|R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGE-KKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MSKLQS+A+REAISSI     E K R FTETIELQIGLKNYDPQKDKRFSGSVKLPH+PR
Sbjct: 1  MSKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPR 60

Query: 61 PKMKICMLGDASHVEE 76
          PKMKICMLGDA HVEE
Sbjct: 61 PKMKICMLGDAQHVEE 76

[Close]
BLAST of CsGy6G012540 vs. TrEMBL
Match: tr|A0A1S3C7Q8|A0A1S3C7Q8_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.9e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASHVEE
Sbjct: 61 KMKICMLGDASHVEE 75

[Close]
BLAST of CsGy6G012540 vs. TrEMBL
Match: tr|A0A0A0KEW8|A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.9e-34
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASHVEE
Sbjct: 61 KMKICMLGDASHVEE 75

[Close]
BLAST of CsGy6G012540 vs. TrEMBL
Match: tr|A0A1S3CEF7|A0A1S3CEF7_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASH+EE
Sbjct: 61 KMKICMLGDASHIEE 75

[Close]
BLAST of CsGy6G012540 vs. TrEMBL
Match: tr|A0A0A0LVE6|A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAISSIF DS EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMKICMLGDASH+EE
Sbjct: 61 KMKICMLGDASHIEE 75

[Close]
BLAST of CsGy6G012540 vs. TrEMBL
Match: tr|A0A059DAY2|A0A059DAY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03850 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-31
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0 

Query: 1  MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60
          MSKLQSDALREAIS IF+D  EKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP
Sbjct: 1  MSKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRP 60

Query: 61 KMKICMLGDASHVEE 76
          KMK+CMLGDA HVEE
Sbjct: 61 KMKVCMLGDAQHVEE 75

The following BLAST results are available for this feature:
BLAST of CsGy6G012540 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008458587.11.0e-33100.00PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: ... [more]
XP_004139485.12.0e-3296.00PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetic... [more]
XP_008461453.12.0e-3296.00PREDICTED: 60S ribosomal protein L10a [Cucumis melo][more]
XP_022142655.11.3e-3194.6760S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal p... [more]
XP_022153072.11.7e-3194.6760S ribosomal protein L10a-like [Momordica charantia] >XP_022153073.1 60S riboso... [more]
BLAST of CsGy6G012540 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G27530.15.9e-3184.00Ribosomal protein L1p/L10e family[more]
AT1G08360.11.7e-3084.00Ribosomal protein L1p/L10e family[more]
AT5G22440.16.5e-3084.21Ribosomal protein L1p/L10e family[more]
BLAST of CsGy6G012540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|B8B9K6|R10A_ORYSI3.7e-3082.6760S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3... [more]
sp|B7F845|R10A_ORYSJ3.7e-3082.6760S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE... [more]
sp|P59230|R10A2_ARATH1.1e-2984.0060S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=... [more]
sp|Q8VZB9|R10A1_ARATH3.1e-2984.0060S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=... [more]
sp|P59231|R10A3_ARATH1.2e-2884.2160S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=... [more]
BLAST of CsGy6G012540 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C7Q8|A0A1S3C7Q8_CUCME6.9e-34100.00Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1[more]
tr|A0A0A0KEW8|A0A0A0KEW8_CUCSA6.9e-34100.00Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1[more]
tr|A0A1S3CEF7|A0A1S3CEF7_CUCME1.3e-3296.00Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1[more]
tr|A0A0A0LVE6|A0A0A0LVE6_CUCSA1.3e-3296.00Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1[more]
tr|A0A059DAY2|A0A059DAY2_EUCGR3.2e-3192.00Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03850 PE=4 SV... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023674Ribosomal_L1-like
IPR028364Ribosomal_L1/biogenesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0008150 biological_process
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005575 cellular_component
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G012540.1CsGy6G012540.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028364Ribosomal protein L1/ribosomal biogenesis proteinPFAMPF00687Ribosomal_L1coord: 23..73
e-value: 1.9E-7
score: 30.9
NoneNo IPR availableGENE3DG3DSA:3.30.190.20coord: 1..79
e-value: 5.1E-29
score: 102.7
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 2..75
NoneNo IPR availablePANTHERPTHR23105:SF9860S RIBOSOMAL PROTEIN L10A-1-RELATEDcoord: 2..75
IPR023674Ribosomal protein L1-likeSUPERFAMILYSSF56808Ribosomal protein L1coord: 1..75

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy6G012540Cla008651Watermelon (97103) v1cgybwmB478
CsGy6G012540Csa6G152330Cucumber (Chinese Long) v2cgybcuB282
CsGy6G012540MELO3C021429Melon (DHL92) v3.5.1cgybmeB365
CsGy6G012540ClCG02G022120Watermelon (Charleston Gray)cgybwcgB401
CsGy6G012540CSPI06G12510Wild cucumber (PI 183967)cgybcpiB288
CsGy6G012540CmaCh02G013300Cucurbita maxima (Rimu)cgybcmaB820
CsGy6G012540CmoCh02G013700Cucurbita moschata (Rifu)cgybcmoB799
CsGy6G012540CmoCh20G001870Cucurbita moschata (Rifu)cgybcmoB780
CsGy6G012540Lsi10G011670Bottle gourd (USVL1VR-Ls)cgyblsiB377
CsGy6G012540Cp4.1LG05g03990Cucurbita pepo (Zucchini)cgybcpeB856
CsGy6G012540Cp4.1LG16g08160Cucurbita pepo (Zucchini)cgybcpeB758
CsGy6G012540MELO3C021429.2Melon (DHL92) v3.6.1cgybmedB366
CsGy6G012540CsaV3_6G014960Cucumber (Chinese Long) v3cgybcucB298
CsGy6G012540Cla97C02G048190Watermelon (97103) v2cgybwmbB406
CsGy6G012540Bhi10G000033Wax gourdcgybwgoB579
CsGy6G012540Carg18431Silver-seed gourdcarcgybB0422
CsGy6G012540Carg02630Silver-seed gourdcarcgybB0915
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy6G012540Cucumber (Gy14) v2cgybcgybB102
CsGy6G012540Cucumber (Gy14) v2cgybcgybB151
CsGy6G012540Cucurbita maxima (Rimu)cgybcmaB730
CsGy6G012540Cucurbita maxima (Rimu)cgybcmaB802
CsGy6G012540Cucurbita maxima (Rimu)cgybcmaB862
CsGy6G012540Cucurbita moschata (Rifu)cgybcmoB715
CsGy6G012540Cucurbita moschata (Rifu)cgybcmoB844
CsGy6G012540Cucurbita pepo (Zucchini)cgybcpeB811
CsGy6G012540Cucurbita pepo (Zucchini)cgybcpeB827
CsGy6G012540Cucumber (Chinese Long) v2cgybcuB284
CsGy6G012540Bottle gourd (USVL1VR-Ls)cgyblsiB399
CsGy6G012540Bottle gourd (USVL1VR-Ls)cgyblsiB412
CsGy6G012540Melon (DHL92) v3.5.1cgybmeB448
CsGy6G012540Melon (DHL92) v3.5.1cgybmeB425
CsGy6G012540Melon (DHL92) v3.6.1cgybmedB422
CsGy6G012540Melon (DHL92) v3.6.1cgybmedB446
CsGy6G012540Watermelon (Charleston Gray)cgybwcgB393
CsGy6G012540Watermelon (Charleston Gray)cgybwcgB427
CsGy6G012540Watermelon (97103) v1cgybwmB424
CsGy6G012540Watermelon (97103) v1cgybwmB473
CsGy6G012540Wild cucumber (PI 183967)cgybcpiB290
CsGy6G012540Silver-seed gourdcarcgybB0265
CsGy6G012540Cucumber (Chinese Long) v3cgybcucB299
CsGy6G012540Watermelon (97103) v2cgybwmbB399
CsGy6G012540Watermelon (97103) v2cgybwmbB432