CsGy6G012540.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATCGATTGTCGTCCATCTACAAGCCTAAGGCCCACTGGACTACAAATTGGGCCAAAATCGGCCCAATCTACACTAAAAAAAGGCCCAAGCCCATTACTGTAGCAAAACTGCATAACCTAGGTTTATCATCATCGGCCCTTCTTTCTTCATCGCCTCCCTTCGTTCTTCCATTATATATTTATTCTCTGTTCGGCCGTCGAAAAACCCTAGCTTCCTGTCTTCTCACCAGGTACTCACCCATCCTTGTTCTTCTATCCTATGTTTATTTTGTTGAACCTGCTACTCGATTCTCCATTATTGCAACTATTTTACTCTTCTTTCTTCTTTCTTCTTCCTTCAATCTGATCTTCAGTTCTTGCGTATTCTTCATTCGATTTGGTTTGGTTAGTCTGTTTGTTATAATTGTAGTTTATTGTTTTTTTTGTTTTCTTCTCACCAGTTTGTAGCTACTTCTTGGGAAAGACAAAGCTCCGAAAATGAGGTATGTAGTTTTTATTCACCGTTCAGATTCTGCTGTTTTTCAGAATGAATTTGATTATTGCTTCCGTTGTTGTTATCTAATTTGCGAATTCATAAAGTTTGTTCTTGTTATTTATTTCTGCCAGTAATCTAAATATTTGATTGAGGTAGATTTAGAAGTATGTAGATGGTAGTACTGGAATTTTCTTAGGGTTGTAGTTTAATGGGTTTAGGGTTGTTGGAGGCTTTGGTTGCTGATGGGTTTGTTGGTTTGTATGTACAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGTAAACTTAATCTCCTCTTTTACATATTCACTTAATACTTGTTATGCCCAGTTACTGTTGTCCTTGGTTTTTTCCCCGTAGAGGACTACTAGTTTGTATGTTTCTTGCTTGTTGGAGTTTTGCTTGATAATGTGTGATGTACTTTATGAAACATCTCGGTGGTTGGTACATTTGAATTAAGTTTATAGTTTGCAGGGTCTTCTATTTGTGCCTTAAAATTTAATGGGTATGGTGTTGAATTCTTCATCAAGAGTATTTGTGAGTTTATACTCATCTTGGAAAATAATGTACTTTTTTGGCATTTCATGGGATGGTAGATTCAAATTAAAGACTTACACATACACTATAACTTTGTTCTTTTACTGAATATGTGTATGCATATTATAGGCAGAGAAGATTGGTTTGGATTATATGGATGTTGAAGGTCTGAAGAAGCTAAACAAAAACAAGAAGTTGGTTAAGAAACTTGCCAAGAAATACCATGCCTTTTTAGCATCTGAAGCTATTATCAAGCAAATTCCCCGTCTTCTGGGCCCTGGTCTCAACAAGGCAGGCAAGTGAGCTTATGACTAACAGACCTGGAATTTTATCCTTGATCTCGTGACTCAAGTTAGAAAGTTTTTCTTAGCTCTATTGATTCTTGTACAAAAGTTTTCTCAGCTCTATTGGTTGTTTATAGTGGTGATGAAGTGAATGCATTTTTAACCTTTTACTTCATGATTTACTTTCTGTTTAAGCTTAAGTTGTTTTAACTTTGTACTTCATTTCTGACACTTCAATTTTGAATTTTAATCTATTTTCATTTTGTAGTTTGTACTAACATTGGCATTGAAATTTTGATTACAGGAAAGTTCCCTACCCTGGTCACTCATCAAGAATCTCTTGAATCTAAAGTAAATGAGACTAAGGCAATGGTTAAGTTCCAATTGAAGAAGGTTCTTTGTATGGGTGTGGCCGTTGGCAATATTGCCATGGAAGAGAAGCAAGTTTTTCAGAACGTTCAAATGAGTGTCAATTTCCTTGTTTCTTTGTTGAAAAAGAATTGGCAAAATGTAAGTCACGGGACATACTTTTCCCTCCATGTTATTTTAGTCTGTTATCTTCTGTTTATGCAACAAGCATACTCCTAGGCTTGTCTTTTTTCATTTACTAACACGATTTATAATGCTTCTCAATACTCAATGAAGCATTGCTCTTTTATCTAATAATAATAGGATTTTATTGTTCTGATCAGGTGAGGTGCTTGTACCTGAAGAGTACAATGGGGAAGGCATATCGAGTCTTCTGAGGAATTTTCATAACCTAGATAGTTCTGTTTGTTTGTTCTTAAATCGAAGAAGTTGAGATAAGATTTCTATATTTATGATTGATGAAAAATTTTCCTGTTTGTTTCCTTTTAGTAAACCATTAGCTGCACAATCGTCAACACTTATGATGGGAGTAATGTGTTTTTTTGTTTCACTCTATATGTTCTGTAGATTTTTGTTTCAATTTATTTGATTATTGCTTAGTTTCAATTAAAGAACATCTAATCAGTTTGTGCAGGGGCTTCCAGTTATTCAAAATTAA ATCGATTGTCGTCCATCTACAAGCCTAAGGCCCACTGGACTACAAATTGGGCCAAAATCGGCCCAATCTACACTAAAAAAAGGCCCAAGCCCATTACTGTAGCAAAACTGCATAACCTAGGTTTATCATCATCGGCCCTTCTTTCTTCATCGCCTCCCTTCGTTCTTCCATTATATATTTATTCTCTGTTCGGCCGTCGAAAAACCCTAGCTTCCTGTCTTCTCACCAGTTTGTAGCTACTTCTTGGGAAAGACAAAGCTCCGAAAATGAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGGGCTTCCAGTTATTCAAAATTAA ATGAGCAAACTTCAAAGTGATGCGTTGAGAGAAGCCATTTCATCTATCTTCGCTGATAGCGGTGAAAAGAAGCGCAAATTCACTGAGACCATTGAACTTCAGATTGGACTTAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCCCATATCCCTCGCCCTAAGATGAAGATCTGCATGCTTGGAGATGCTTCACACGTTGAAGAGGGGCTTCCAGTTATTCAAAATTAA MSKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDASHVEEGLPVIQN
BLAST of CsGy6G012540.1 vs. NCBI nr
Match: XP_008458587.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] >KGN46947.1 hypothetical protein Csa_6G152330 [Cucumis sativus]) HSP 1 Score: 151.8 bits (382), Expect = 1.0e-33 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. NCBI nr
Match: XP_004139485.1 (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetical protein Csa_1G163140 [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32 Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. NCBI nr
Match: XP_008461453.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo]) HSP 1 Score: 147.5 bits (371), Expect = 2.0e-32 Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. NCBI nr
Match: XP_022142655.1 (60S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal protein L10a [Momordica charantia]) HSP 1 Score: 144.8 bits (364), Expect = 1.3e-31 Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. NCBI nr
Match: XP_022153072.1 (60S ribosomal protein L10a-like [Momordica charantia] >XP_022153073.1 60S ribosomal protein L10a-like [Momordica charantia]) HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31 Identity = 71/75 (94.67%), Postives = 72/75 (96.00%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TAIR10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 130.2 bits (326), Expect = 5.9e-31 Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TAIR10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 128.6 bits (322), Expect = 1.7e-30 Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TAIR10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 126.7 bits (317), Expect = 6.5e-30 Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. Swiss-Prot
Match: sp|B8B9K6|R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 3.7e-30 Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. Swiss-Prot
Match: sp|B7F845|R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1) HSP 1 Score: 131.7 bits (330), Expect = 3.7e-30 Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. Swiss-Prot
Match: sp|P59230|R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1) HSP 1 Score: 130.2 bits (326), Expect = 1.1e-29 Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. Swiss-Prot
Match: sp|Q8VZB9|R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 3.1e-29 Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. Swiss-Prot
Match: sp|P59231|R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.2e-28 Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TrEMBL
Match: tr|A0A1S3C7Q8|A0A1S3C7Q8_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 6.9e-34 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TrEMBL
Match: tr|A0A0A0KEW8|A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 6.9e-34 Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TrEMBL
Match: tr|A0A1S3CEF7|A0A1S3CEF7_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32 Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TrEMBL
Match: tr|A0A0A0LVE6|A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 1.3e-32 Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 0
BLAST of CsGy6G012540.1 vs. TrEMBL
Match: tr|A0A059DAY2|A0A059DAY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03850 PE=4 SV=1) HSP 1 Score: 142.9 bits (359), Expect = 3.2e-31 Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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