CmoCh02G007090 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G007090
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Biogenesis of lysosome-related organelles complex 1 subunit 1
Location	Cmo_Chr02 : 4442678 .. 4449309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCGTGAGTGACATGTGAATCCAGAATATTTCACCAGCCGAACATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGGTTAGTTTCTACTTCCGCTTTCTCTTTCTTTCTTGGTCTTCGTGACCTTTTGCTGCTGACTGAATCGAATTTCGTAAAATGAAATCGTAATTGTCGTTATGAATCATGGCGATAGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGTTTGCTCTCATTCTGTGAAAGCTACTCTTGGTTAAAATTACATAGAAATCTACATTTTAGCTGTTTATAGGCATAAGTTAACTCAGCATTGTTGCGAATGGAAGCTCTCTAGCATTGTTATTGAAGTCCAAAAATTCATTCTTCCATAAATTGAAAAGTTTTAAAGTCAATTAAATCACTTGAGCTTGAAGGATTATGGAACGGCAGTTGATAATGCTTTTGGTACTACCTGCTAATCACATCTGAGTCTAAAAGATTTTCCCTCAATAGTGGTGTAAGTGGTGCATCATGGCTTGCATACTGCCTATTTATGTCCTACGAAGAACTTGTGGGCTATTAGACATTGAGTTATTGTGTATATTGTTAGAGTATTGTTAGAACTGTTTCGTATTTTTCATTTTTGTTTAAACGTTTTCTGTTAGATTCATGATAGTGGTTAGTTATTGTAACTCAGTCGCTGAGCAGAGTTTACAAAACCGGCCCCCTGTTCTCGTATCAAGAAATATATGAATAGAAGTGCAGTTTCTGAAGCTTAGTCAGAGGCATTTTGCAGCTATTTTTTTGTTGGTCTTCTTGAGACGACTTAAGCTATTATTCATTTTAAAATAATGAGTTCATTAACTTGCTAGCCATTCAGCACAACTTTTGGAAACAGTTTTGAAGTACAGAAGCAAAGTGCTATTTTTCTAAACAGCTCCTCCAACTATCATTTAGGTTTCAAGGATTCTTTTTCCTGGTTTGATAGTTTGTTTTCAATAACTTGTACATCACATTGATAGGAAGAGGAGGCTATAAACTTGAAAAAATACTTTTCAAACTCGTACAGGTTATGAATGTATTAAGGGTAAAGTGAAAATCAGAAAAGGTATCAAACTCCTCAGATTCAAGGTGGAAATAAATAAGATTTTTCCACTCGGCGTGGAGCTCTCTCCCTGACCCTCCCTCCCCCTTTTATCACCAGCTTCCCCTTTCCTGCACCCATACATCCATGATTGATTCTGACAGTGTTGCTTTATCTTCTTATAAATATGCATTAGTCTAGGAACATAAGAATCCCCATTCCCTAACAAGTGGGAAACTGATCAACTGGAATCCTCTATTGTTGTTTACAATAAACTTTTCACGATGGCTGGTACAAGATATCAAGAGCTCTCCACCGACATACAAGCTGTTACTGTTCTATGAACCCTTTGAATAAGACAGGGCCCTCCCTTGATATGAAGACAGAGAATGGGGGTTGAATTAGAATCTAAAACCTCTAGGTTCATTGATGGGATAATGAAACTTTCAAATACATATGAGACGCTTGTGGAGGTTTCATTGAAAAATTGAACAGAACCATGTCTAGAATGTATTTAATGGACACATCTAAAAAAAATCAAGGGCAATGGAATTGGTTATTGGTTTCCTAGCTGTTTTAAGTCTGTCGTCTTCATCTAAATGCCCATTTATATCAACATTGATCCTTTCTTCATTATGGACAATTACTTGAGTTATTCGGCTGGAATCCATAGCTTCATCCCCTGGCAACAATCTCCGATAAAAAATCCATCTTCAAAAGTGTGATGTTGACAATTCTGCAGGGGTTTTGGGACTGTACCCTTGGGGGCCATGTCAGGAGGAATATGGATCTTTTTTAACTCCTTCATTGAAAGTGATAATCATAGATATTCTTCTACAAAATGGCCTGTACACATGTTCTGATTTTAGACACTCCCCAACAGCCCCTCATATTGATTGTTTCCTTTATCAAAAGGGGTGATGGAAAAATTTACAAATGCATCAGTTAGATGGCTCTAGAGGCCTACATTGGTCCATTTCCCCATTCTTTTATCATTTGTTTGCTCTATTTGATGTCCTACCCCCTTTCGATTTGAGAATATGTGGTCACAACATCATTCTTTACTCTCTCTTGTGGAATATTGGTGGAAGAATACACCTCTTCGTGGCTGTCTGGGACATGGTTTTATCTTGAAACTTAAAGGCCTTAAAGCTATTGTGGAATAGGAACACTTTTGGTTGCATTACTACCCAAAAGAATCAGCTAATTACAGAAATAGCTCTCATCGACAGCAAGGAAGAATCTAGGGATTTTCATCCCTTTCACAAAATTCAGAGGAATTTATTAAAAGAAAATTTACTTAAAAAAAAAATCCTCTCGAGCCAAAAAATGCAAGATAAAGTGGCTTTGTGACGGTGACATAAATTCCTCTTTATTCCATCCAATTATGGCTACAAAAAAAGTGGAAAAATTCTAAATCACAAATTCTGTCTAAGAATAGCTGCCTCACTTATTCTGAAATTGAAATCAAGTTTCGCTCCTTCTTCACCAATCTTTATACCAAGAAACCAGGATCTGGTTCTCTTCCAACATCTTTCAATGAGATTCTCTTACTGCACAGCAAGAAACCAAACCAGGATCTGGTTCTCTTCCAACATCTTTCAATGAGATTCTCTTACTGCACAGCAAGCTTCGCTTTTAGAAATAGGTTTTACTGTGAAGATTAAATCAGCGGTATCAGGTTTGGGCTCCAACAAATGTCCTGGTCCGGATGGGTTTACAGCTGAGTTCTTTAAAATGTTTAGGCACATCCTTCAAAGTGACATCTTGAGTGTGCTCCAGAAACTTGTAGGAACAGGTTTATAAACGCTGCATTGAATGAAACCTACATTTGCCTTATCTCAAAAAAATGGACTCGCATACTGTAAATGACTAGTCCGGTCAACCTCACTTCTTGTCCTTACAAGATCATTGTCAGGGTACTCCCAGAGAGCTTAGAGACGGTTCTTCCTCTCATCATCACTGATTTTCAGTAGGCACTCATAAATTGTACTTGATACATCTTTTGTGACCCATTAACTTGTAGTGAACGGATTTCTCATCAAACTAAACATTGAAAAAGCTTTTGACAAGGTGGATTGGTCCTTTCTTGATAATATTCTAGAAGTCAAAGGTTCTAACCCTTGATGGCACAAATTGATTAAGGGTTGTATATCCTCGTCAAATCTCTCCCTCCCTTTCTTTTTATCCTGACTATGGATTGCTTTAGCTGTCTTTTGATTCAATTGGCATCCTCGGGATCTATGAAGGGGCTTGAAGTTGGTTCTAGTGGCTGTAATATCACTCATCTCTAATTTGCAGATGATACACTACTCTTTTCATCTCATGAGGCTATCCATAACTTATTTGGTATGGTTCACGCCTTTGAGAATGTCTCAGGTCTCAATATCAATATTTGCAAAACTGAAATTTTGGTCTTACCTCGGTCTTCCTTTGAACAACAACCCAAAGCTTTCTTCTTTTCCCACAGTGGAAAAAATACGAAGGATATTAAATGGCTGGAAAAGAACTTTCATATTTCCAAGGGAAGATGGCACACACTTATCCAAGCGACACTTTGTAACCTCCCCGCCTATTATATCTCCCTTTTTGAGATGCAAAACAAGATTTTCAAGACCGTTGAGAAATTATTCTGGAACTTTCTTTGGGGAGGACATGAGGGTTTCCATAAGCNTCTTATTGACAAAGTACGTCACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTCTTTTGTAAGAGAATTTCATTGATGTTTGAAATTTACAAAAGGGATGTGTTATCCATGATGTTTTAAAAAAAAACCTTCCCAATTTACAACGAGGGAGGTATGACTATAGGAACCAAAAGTATTAGACAATTTACACCAAAATATACCGTGGTAAACAACATTGTCAAAGAGTTTTGTATAAATCTATGTCTTCGTCATGAATACTCTTTGATTTTTTTCCACCGATTCCAAAAGATGGAATCCAAAAGAAAACCATAATGAGATTTTTTCATAGCAAGACTTTTGTATTCTTAAAGGAGTGGTAAGCTAATGCCATGTCCAATAAATCGTTTACCTCCCTTGGAAAAGTGAGATGCCATCCAAATTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAATCCCTGTTCATAAATTTTGTCTCTCTGTGAATAATCTAAAGACTTGAATCACCCAAAAGTTTCTCGGTTGAAGACCGACAGAAACTGGTTGAAAAGAATGACATGAATATCATAATCTTGAATATGTGAACTAGTAAAGCCTACCAACCAAATCTTATTTCCTTTCATGTTTTATACGTATCTTCCTTATGTTTTTTCTTTTTCTTTTTTCATTTTGATATGTTATCGAGATAGTAATTTGATGTGTGTTTATATTATAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGAAGTACTCGTCGCGAAAGAGTTAACTGTCCTTTCCTTCACCGAGCTCATTCCGGTGAGTTGAAAAAGATATAGATCCTCACTCTCTGCTTTAAGTTCGCTGAATGTGTGCCCCCATAACATGGCCTGATAAGTTCTTGTGATATAACGATACAAAGGTGCAGCATATCCAGATGGAAACTCCTGTAGAAACTTGGAGCACCTCAGTACCCAACTTGGCTGCTACCTCACTAACTCTGTAAAATAATTTGTCCACTCTTCTTTTTTTCGAGTTCATTGATTTGTTCCTTATTTTAACACAGTGGAATCAATTTGTCTATTTATTGCTCATGTACGCTGCATCCATCCTTCTGAGTACAATTCTTAGCTTCTGCCATGTAATAATCAGTTCTACACTCTTCCATTTATGGTGTCTATATTATGCTCTCTCCACTGATACTCAGCTTCATAGTTATCAGAAATATTTGTTGGGTTTAAAGTGTTTTGATCTAAATTTATTATTGACCACAAAGTTCCTATGGCTTAATCGAATCATCTCCTTAAATATGCTACACTCTTCTTCTCCATTTTCTGACTTAGGTTTTGGAGTTTGGTTCTTCACTTGGGAAGCATCAAAATACCATTGCTTTTGGGTGATGATGGATATCAAGAAATGCATGAAAATGATGATGGTCGAAACAGGTGAGCCCTTTCTTGCTTTTAACCGAGTGCATACATTGAGTTGGAACTGTTTTATCTAATACTAGTATGTGCGGCAAGTACTTCTGCCTCATTCTGTTCCTGAATGGGAGGTATGCTTGGCCCCTTGTTACATTACCTTTTTCTATGCTTATGGTTTGAGACATCAAGCCGCATCACCTTCTCTTCGATAATAAAGGAGAAAAGGTTTTAATGCACCTAGGGTGTTTAAGTGCCCCTTTTTTTGAGGGGAGCTGGTCCATGTGGTAGAAGGCGAACAAAGGATAGCGTGCTTGTGTTAGAAGCGAGCAAGTGGGTGAACGAATCACCAACCAAACGGGCCACTTGGTAACTAGGAGCAGCACAGCAGCCCCGAAGGTCGAAACAGGCCCTCTGCTGGTGAGTTTCAAGTTCTTGACTTTGTCCACTCCTAATATTTCTGTTCATTAAGTGAATTACAAATTAAACAAAAGTTTCCTTCATGGTGTTGCCTCATTCTCTTTTGTGGTCAAGTCGAGCCTTTTCCTCTTTTTTTTTTTTTTGGAAAAAAAAGATCTATTAGTTTATATTGATCAAACATAACTTTCAAGGACTTGCAGCCTCGAGATGAAGCCACGTGGAAGAAGTGGTACTGCTCGCCCTTATTTTTTTAATAAAAAAATATTTTAAAATCAATAATATATTTAGAGAGACGGTGGTTTTCCCTTATTTATTTTATTATTTTCTGAAATAAGTATTTGAGTATATGAATTTGAATTACCATTAAACTATGTTGACTTTGAAGACCCTCTAATTAAATTAAATTAATACTTCTATTATTTTCTCCATTTCTTTTCAATTAAATCAAACTAATTATAAGTTAATATCAAATTTTCAAGTTCCATAATTATTACATCATCAATTTTATATAAAAAATAATTGATGTCTTATTCTATAAATTATATTCATTTACATCAATATTAAACATTGCATTTTTTAAATCATATTTCATTTTGGTCAAAGTCTAATATCGACCTATAATAACAATACAATAATAGTAATGGTATGATGATGATGATGATGAACAGGTTGAGTTGAGGGTGAAGCAGGC

mRNA sequence

GGGCGTGAGTGACATGTGAATCCAGAATATTTCACCAGCCGAACATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGAAGTACTCGTCGCGAAAGAGTTAACTGTCCTTTCCTTCACCGAGCTCATTCCGGTGCAGCATATCCAGATGGAAACTCCTGTAGAAACTTGGAGCACCTCAGTACCCAACTTGGCTGCTACCTCACTAACTCTGTTTTGGAGTTTGGTTCTTCACTTGGGAAGCATCAAAATACCATTGCTTTTGGGTGATGATGGATATCAAGAAATGCATGAAAATGATGATGGTCGAAACAGGGTGTTTAAGTGCCCCTTTTTTTGAGGGGAGCTGGTCCATGTGGTAGAAGGCGAACAAAGGATAGCGTGCTTGTGTTAGAAGCGAGCAAGTGGGTGAACGAATCACCAACCAAACGGGCCACTTGGTAACTAGGAGCAGCACAGCAGCCCCGAAGGTCGAAACAGGCCCTCTGCTGGTTGAGTTGAGGGTGAAGCAGGC

Coding sequence (CDS)

ATGAATTCTCCGTCAGGGCAATCACGGCAGCACCTCCCTGCACCGCGTAATCGCGGGAAGTTCCAATCGGAGGCGGAGAGATTGAGCGCCGACGTTGGAGGACTCGAAGCTTCATTGTTTCAGATGGTAAATGATCACCAGTACGCCTCTCTCAAGCTCCGAGAGAACTCCGAGAAGGCGAAGAAAGATGCTATTCAGAAGGCGGTGCGCGTTTCGGATCTCTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTTGAAATTAGGGCTTTATCGACCACGATTACCCGATTTATGAAGCAGACCGATCAATGGCTCGCCGCCACTCACGCTCTGAACACTGCTGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATAGATTTCGATTGTAAGAGCATCACTACTGCCATCCATAACATTTACCAAGACTGA

Homology

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BLAST of CmoCh02G007090 vs. Swiss-Prot
Match: BL1S1_ARATH (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 7.2e-40
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MN+P       L A R R     E E+   +   LE+SL Q+++D++ +SL+LRE +E++
Sbjct: 1   MNTPMS-----LSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERS 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           +K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L+ T+ +F KQTDQWLA THA
Sbjct: 61  RKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           +N+AVKEIGDFENW+KT++FDCK IT AI NI++D
Sbjct: 121 VNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

[Close]

BLAST of CmoCh02G007090 vs. Swiss-Prot
Match: BL1S1_XENTR (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.3e-20
Identity = 45/116 (38.79%), Postives = 75/116 (64.66%), Query Frame = 1


Query: 39  LFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALSTTITRFMKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ 155
            L T   +F KQT QW++     N A+KEIGD ENW ++I+ D + I TA+  +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of CmoCh02G007090 vs. Swiss-Prot
Match: BL1S1_HUMAN (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 14  APRNRGKFQSEAERLSADVGGLEAS---LFQMVNDHQYASLKLRENSEKAKKDAIQKAVR 73
           AP +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  
Sbjct: 2   APGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATC 61

Query: 74  VSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGD 133
           +++ LVD +N GV ++++NQ+ ++ E++ L     +F KQT QW+      N A+KEIGD
Sbjct: 62  LTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGD 121

Query: 134 FENWIKTIDFDCKSITTAIHNIYQ 155
            ENW ++I+ D ++I TA+  +Y+
Sbjct: 122 VENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of CmoCh02G007090 vs. Swiss-Prot
Match: BL1S1_PONAB (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN=BLOC1S1 PE=2 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 48/144 (33.33%), Postives = 84/144 (58.33%), Query Frame = 1


Query: 14  APRNRGKFQSEAERLSADVGGLEAS---LFQMVNDHQYASLKLRENSEKAKKDAIQKAVR 73
           AP +RG+  S   R    V   +     L +++ +HQ    + +E  EK +++AI  A  
Sbjct: 2   APGSRGERSSFRSRRGPGVPSPQPDVTMLSRLLKEHQAKQNERKELQEKRRREAITAATC 61

Query: 74  VSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGD 133
           +++ LVD +N GV ++++NQ+ ++ E++ L     +F KQT QW+      N A+KEIGD
Sbjct: 62  LTEALVDHLNVGVAQAYMNQRKLDHEVKTLQVQAAQFAKQTGQWIGMVENFNQALKEIGD 121

Query: 134 FENWIKTIDFDCKSITTAIHNIYQ 155
            ENW ++I+ D ++I TA+  +Y+
Sbjct: 122 VENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of CmoCh02G007090 vs. Swiss-Prot
Match: BL1S1_BOVIN (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.5e-18
Identity = 41/116 (35.34%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 39  LFQMVNDHQYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +HQ    + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALSTTITRFMKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ 155
            L     +F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA+  +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

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BLAST of CmoCh02G007090 vs. TrEMBL
Match: A0A0A0KEG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G216920 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 5.4e-50
Identity = 111/126 (88.10%), Postives = 112/126 (88.89%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S SGQSR  LP   NR KFQSE ERL+ADVGGLEASL QMV DHQYASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVK 127
           LNTAVK
Sbjct: 121 LNTAVK 126

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BLAST of CmoCh02G007090 vs. TrEMBL
Match: A0A067LMV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17336 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.0e-49
Identity = 98/143 (68.53%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 12  LPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRV 71
           LP  R R     + ++  A+ GGLEASL Q++ DH   SL+LR+ +EKAKKDAI+ AVRV
Sbjct: 6   LPLARTRVVSPQDVDKSQAEPGGLEASLLQLMQDHHNTSLRLRDRTEKAKKDAIRNAVRV 65

Query: 72  SDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGDF 131
           SDLL+DAVNGGVQESF+N+K IELEIRAL+ TI+RFM+QTDQWLAATHA+NTA+KEIGDF
Sbjct: 66  SDLLMDAVNGGVQESFINEKRIELEIRALAVTISRFMRQTDQWLAATHAINTAIKEIGDF 125

Query: 132 ENWIKTIDFDCKSITTAIHNIYQ 155
           ENW+KT++FDCKSI+TAI NI+Q
Sbjct: 126 ENWMKTMEFDCKSISTAIRNIHQ 148

[Close]

BLAST of CmoCh02G007090 vs. TrEMBL
Match: W9QXT7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002214 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 5.6e-47
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 1


Query: 12  LPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRV 71
           LP  R R    S+AE      GGLE+SL Q+V+DH  +SL+LRE +EK KK+AI+ A RV
Sbjct: 7   LPVARARVTPSSDAEP-----GGLESSLLQLVHDHHQSSLRLRELTEKKKKEAIRNAARV 66

Query: 72  SDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGDF 131
           SDLLV+AVNGGVQE FVN+K IELEIRAL+ TITRFMKQTDQWLAATHA+NTAVKEIGDF
Sbjct: 67  SDLLVEAVNGGVQEFFVNEKCIELEIRALAATITRFMKQTDQWLAATHAINTAVKEIGDF 126

Query: 132 ENWIKTIDFDCKSITTAIHNIYQD 156
           ENW+KT++FDCKS+  AIHNI+Q+
Sbjct: 127 ENWMKTMEFDCKSVVAAIHNIHQE 145

[Close]

BLAST of CmoCh02G007090 vs. TrEMBL
Match: A0A0D2QRK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G151600 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 2.8e-46
Identity = 103/155 (66.45%), Postives = 121/155 (78.06%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGG-LEASLFQMVNDHQYASLKLRENSEK 60
           MNSP       LP  R R    SE  +  A  GG LE+SL Q+ + H + SLKLR+ +EK
Sbjct: 1   MNSPQ------LPQTRGRVLSSSEINKSPAGSGGDLESSLIQIYHHHHHNSLKLRDQAEK 60

Query: 61  AKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATH 120
           AKKDAI+KA RVSDLLV+AVNGGVQESF+N+K IE EIRAL++TI RFMKQTDQWLAA+H
Sbjct: 61  AKKDAIKKAGRVSDLLVEAVNGGVQESFINEKRIEAEIRALASTIARFMKQTDQWLAASH 120

Query: 121 ALNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQ 155
           A+NTAVKEIGDFENW+K++DFDCKSI  AI NIYQ
Sbjct: 121 AINTAVKEIGDFENWMKSMDFDCKSINAAIRNIYQ 149

[Close]

BLAST of CmoCh02G007090 vs. TrEMBL
Match: D7SJL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07760 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 6.2e-46
Identity = 95/145 (65.52%), Postives = 115/145 (79.31%), Query Frame = 1


Query: 10  QHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAV 69
           Q LP  R R    +E ER +AD  GLEASL Q++ DH   SLKLR+ +EKAK DAI+ A+
Sbjct: 4   QPLPVARARVLSPAEIERPNADPSGLEASLLQLIQDHHQTSLKLRDETEKAKNDAIRTAM 63

Query: 70  RVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIG 129
           RVSDLLVD VNGGVQE+F+N+K IELE RAL+ T+ RF KQT QWLAA+HA+NTA+KEIG
Sbjct: 64  RVSDLLVDTVNGGVQEAFINEKRIELESRALTATVIRFAKQTHQWLAASHAINTAIKEIG 123

Query: 130 DFENWIKTIDFDCKSITTAIHNIYQ 155
           DFENW+KT+DFDC+SI  AI NI+Q
Sbjct: 124 DFENWMKTMDFDCRSINAAIRNIHQ 148

[Close]

BLAST of CmoCh02G007090 vs. TAIR10
Match: AT2G30330.1 (AT2G30330.1 GCN5L1 family protein)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-41
Identity = 85/155 (54.84%), Postives = 115/155 (74.19%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           MN+P       L A R R     E E+   +   LE+SL Q+++D++ +SL+LRE +E++
Sbjct: 1   MNTPMS-----LSAARGRMLPFLEKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERS 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           +K+AI+ A R +DLLV AVNGGV+E FVN+K IE EIR L+ T+ +F KQTDQWLA THA
Sbjct: 61  RKEAIRHAARTADLLVKAVNGGVEECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           +N+AVKEIGDFENW+KT++FDCK IT AI NI++D
Sbjct: 121 VNSAVKEIGDFENWMKTMEFDCKKITAAIRNIHED 150

[Close]

BLAST of CmoCh02G007090 vs. NCBI nr
Match: gi|659127650|ref|XP_008463815.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo])

HSP 1 Score: 270.8 bits (691), Expect = 1.5e-69
Identity = 139/155 (89.68%), Postives = 142/155 (91.61%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S  GQSR  LP P NRGKFQS+ ERLSADVGGLE SL QMV+DHQYASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of CmoCh02G007090 vs. NCBI nr
Match: gi|778714078|ref|XP_011657181.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 7.4e-69
Identity = 140/155 (90.32%), Postives = 141/155 (90.97%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S SGQSR  LP   NR KFQSE ERL+ADVGGLEASL QMV DHQYASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of CmoCh02G007090 vs. NCBI nr
Match: gi|700192020|gb|KGN47224.1| (hypothetical protein Csa_6G216920 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 7.7e-50
Identity = 111/126 (88.10%), Postives = 112/126 (88.89%), Query Frame = 1


Query: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60
           M S SGQSR  LP   NR KFQSE ERL+ADVGGLEASL QMV DHQYASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVK 127
           LNTAVK
Sbjct: 121 LNTAVK 126

[Close]

BLAST of CmoCh02G007090 vs. NCBI nr
Match: gi|802540808|ref|XP_012078383.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas])

HSP 1 Score: 201.8 bits (512), Expect = 8.5e-49
Identity = 98/143 (68.53%), Postives = 121/143 (84.62%), Query Frame = 1


Query: 12  LPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRV 71
           LP  R R     + ++  A+ GGLEASL Q++ DH   SL+LR+ +EKAKKDAI+ AVRV
Sbjct: 6   LPLARTRVVSPQDVDKSQAEPGGLEASLLQLMQDHHNTSLRLRDRTEKAKKDAIRNAVRV 65

Query: 72  SDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGDF 131
           SDLL+DAVNGGVQESF+N+K IELEIRAL+ TI+RFM+QTDQWLAATHA+NTA+KEIGDF
Sbjct: 66  SDLLMDAVNGGVQESFINEKRIELEIRALAVTISRFMRQTDQWLAATHAINTAIKEIGDF 125

Query: 132 ENWIKTIDFDCKSITTAIHNIYQ 155
           ENW+KT++FDCKSI+TAI NI+Q
Sbjct: 126 ENWMKTMEFDCKSISTAIRNIHQ 148

[Close]

BLAST of CmoCh02G007090 vs. NCBI nr
Match: gi|703064282|ref|XP_010087167.1| (hypothetical protein L484_002214 [Morus notabilis])

HSP 1 Score: 195.3 bits (495), Expect = 8.0e-47
Identity = 100/144 (69.44%), Postives = 119/144 (82.64%), Query Frame = 1


Query: 12  LPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKAKKDAIQKAVRV 71
           LP  R R    S+AE      GGLE+SL Q+V+DH  +SL+LRE +EK KK+AI+ A RV
Sbjct: 7   LPVARARVTPSSDAEP-----GGLESSLLQLVHDHHQSSLRLRELTEKKKKEAIRNAARV 66

Query: 72  SDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHALNTAVKEIGDF 131
           SDLLV+AVNGGVQE FVN+K IELEIRAL+ TITRFMKQTDQWLAATHA+NTAVKEIGDF
Sbjct: 67  SDLLVEAVNGGVQEFFVNEKCIELEIRALAATITRFMKQTDQWLAATHAINTAVKEIGDF 126

Query: 132 ENWIKTIDFDCKSITTAIHNIYQD 156
           ENW+KT++FDCKS+  AIHNI+Q+
Sbjct: 127 ENWMKTMEFDCKSVVAAIHNIHQE 145

The following BLAST results are available for this feature:

BLAST of CmoCh02G007090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BL1S1_ARATH	7.2e-40	54.84	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
BL1S1_XENTR	8.3e-20	38.79	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
BL1S1_HUMAN	1.6e-18	33.33	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN...	[more]
BL1S1_PONAB	1.6e-18	33.33	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Pongo abelii GN...	[more]
BL1S1_BOVIN	3.5e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=B...	[more]

BLAST of CmoCh02G007090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEG1_CUCSA	5.4e-50	88.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G216920 PE=4 SV=1	[more]
A0A067LMV0_JATCU	6.0e-49	68.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17336 PE=4 SV=1	[more]
W9QXT7_9ROSA	5.6e-47	69.44	Uncharacterized protein OS=Morus notabilis GN=L484_002214 PE=4 SV=1	[more]
A0A0D2QRK9_GOSRA	2.8e-46	66.45	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G151600 PE=4 SV=1	[more]
D7SJL9_VITVI	6.2e-46	65.52	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07760 PE=4 SV=...	[more]

BLAST of CmoCh02G007090 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30330.1	4.1e-41	54.84	GCN5L1 family protein	[more]

BLAST of CmoCh02G007090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659127650\|ref\|XP_008463815.1\|	1.5e-69	89.68	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]
gi\|778714078\|ref\|XP_011657181.1\|	7.4e-69	90.32	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]
gi\|700192020\|gb\|KGN47224.1\|	7.7e-50	88.10	hypothetical protein Csa_6G216920 [Cucumis sativus]	[more]
gi\|802540808\|ref\|XP_012078383.1\|	8.5e-49	68.53	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatrop...	[more]
gi\|703064282\|ref\|XP_010087167.1\|	8.0e-47	69.44	hypothetical protein L484_002214 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009395	BLOC1S1

Vocabulary: **Cellular Component**
Term	Definition
GO:0031083	BLOC-1 complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0048364	root development
biological_process	GO:0016197	endosomal transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0031083	BLOC-1 complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh02G007090.1	CmoCh02G007090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 score: 5.3
None	No IPR available	PANTHER	PTHR13073	GCN5-RELATED	coord: 9..155 score: 2.1
None	No IPR available	PANTHER	PTHR13073:SF0	BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 1	coord: 9..155 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh02G007090	CmaCh02G007080	Cucurbita maxima (Rimu)	cmacmoB619
CmoCh02G007090	CmaCh20G003150	Cucurbita maxima (Rimu)	cmacmoB553
CmoCh02G007090	Cla013406	Watermelon (97103) v1	cmowmB577
CmoCh02G007090	Csa6G216920	Cucumber (Chinese Long) v2	cmocuB616
CmoCh02G007090	MELO3C025682	Melon (DHL92) v3.5.1	cmomeB531
CmoCh02G007090	ClCG02G019170	Watermelon (Charleston Gray)	cmowcgB525
CmoCh02G007090	CSPI06G15100	Wild cucumber (PI 183967)	cmocpiB622
CmoCh02G007090	Lsi10G014710	Bottle gourd (USVL1VR-Ls)	cmolsiB532
CmoCh02G007090	Cp4.1LG05g09980	Cucurbita pepo (Zucchini)	cmocpeB595
CmoCh02G007090	MELO3C025682.2	Melon (DHL92) v3.6.1	cmomedB603
CmoCh02G007090	CsaV3_6G019000	Cucumber (Chinese Long) v3	cmocucB0750
CmoCh02G007090	Cla97C02G045110	Watermelon (97103) v2	cmowmbB588
CmoCh02G007090	Bhi10G000673	Wax gourd	cmowgoB0746
CmoCh02G007090	Carg11764	Silver-seed gourd	carcmoB1422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh02G007090	Melon (DHL92) v3.6.1	cmomedB614
CmoCh02G007090	Silver-seed gourd	carcmoB0467
CmoCh02G007090	Cucurbita moschata (Rifu)	cmocmoB359
CmoCh02G007090	Cucurbita moschata (Rifu)	cmocmoB403
CmoCh02G007090	Cucurbita moschata (Rifu)	cmocmoB427
CmoCh02G007090	Watermelon (97103) v1	cmowmB548
CmoCh02G007090	Cucurbita pepo (Zucchini)	cmocpeB574