ClCG02G019170 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G019170
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Biogenesis of lysosome-related organelles complex 1 subunit
Location	CG_Chr02 : 33895442 .. 33900919 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTCAGCGTGAAATGTGAAGACAGAATATTTCGCGGGGCGAACATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGGTTAGTTGCAAGTTCCTCGCTCTCTTTCTCTGTTCTTCTGTAATTCCTAACTCTCTCTTATGCCTCCATAGCCTTTAGATGCTGATTGTTTTCAAATTTCGTAAAATTATATCCTAACTTGTCCTTCTGAATCATTGCGATAGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGTTTGCTCTCACTTCGAAAGCAACTACTGAGTTAAAATTTCATGGAAACCCAACATTTTAGTTGTATATCTGAATATGTAAATTCGGCACTGTTGCTTATCAAAGCCTGCTTAATCTTATTACTGACTGAAGGGTTTAGCATTGTTATTGAAGTCCACAAATTCAGTCTTCCAAAAGTTGAGATGGTATTTGAGCTTGAAGGATTACATTGGGGTCCTTTCGATAATGGTTATGATACTGCCTCGTAACCACATTTGATTTTGGGTCTGATTTTTTTCCCCCTCTAACAGCGGTCTAAATGTTGCGCCATGGCTTCCATACTGGCCATATGTGTCCTATGAAGAGTTTGTGGGCTATTAGACATTGATTTGTTGTGTTTATAGTTGGTGTATTGTTAGAACTGTTTTGTTGTTTATATTCTTAGTTTTGATTAAAAGCTTTGTCTGTTAGATTCATAGCAGTGGTTGGTTATTGAAATTCAGTGGCCAAGCAGTATCTACAGTAACAAAACCACCCACTGTACTCATTGTATCAATAAAAATATGAATAGAACTATTGAAATGCACTAGTTTTTTATCTATGAGTGTCAGGACCAGCTTACGCACCTCGACTAATCTCACGGGTTCTCACTAGACAACCTGCCTGACCCTACAACATTTGGGTAGCAAGGAAACTCGTAAGATATTAAATCCTAGATAGGTGGCCACCATAGATTGAACCCATGACCTCTTAGCATTTATTATTACTATGTCTCCTTTTTTAGCACTAGGCCAATCCATGATGGTTTATAGAAAAGTGCTTCTTGAAACTTAGATTAGGGCTATCTTGAATCTGTGTTTTGTTTGCCTGCTTCTTAAGACAACTTAAGCTATTATTCATTTTAAAATTATGAGTTGGGTATAACAAAGGGCTTAGAGAGAATGAATTCAAGCCCAAGATTGCCAATGATCTAGGATTTAATACCTTATGAGTTCTGTTTGCAACCAAATGTAGTAAAGTCAGATGGTTGTTTCATGAGAATAGTTTAAGTGCACAGAACTTAGTCGGGGACACTAATGGATGTCAAAAAGAAAAAAGAAAAAGGTTTCTTTGGCCTTGCAAAATTGCAATCCATACAGCACAACTTTTTGTAAACAGTTTTGAACAAGGAGAAAAAGGCTATTTTAAAAAACAGCTCCCCAGCCATCATTTAGGTTTAGAATATTTTGTTTTGTGGTTTGATGGTTTGCTTTCAGTGACTTGTGCTTGTGCATACATTGTGTTGATAGAAGGAGGAAGCTATCGACTTGGAGAAAATACTTCTCAAACTCGTACATATTATGAACATACAGCTATCATTAAATACTTTTTAAGGGTTTGGCCTCGAGATATTCGGGAGGCGATTGAGGAGTTCCTTCTCCATTTGCCCTTCAAGGAGAAAGGCCGGTTTTTATGGAGAGCTAGGGTGTGCTATTTTGCAGGCTTGTTTTTTGTGGCCCTTGTATGTTTTCATTTTTTCTCAATGAAAGTAGTTGTTTCAATAAAAAGAAAATGAACACACTAAAGACTGCAAAAGTCGAAAATAAAACTGAAGTTCAACTTCCATCTTTTTGATCACTAAATAAACATTTCTATTCATGGAGTCTTTGATGTTGTCTCATCCTTCGAGGGTGAAATGAATATGTACAGTACACTGGGAAAGATATAATCCCTCTCTCTTTCCTTTTTTTTTTTTTTTAAAGAAAAAGATGATAGAAATAATCTCTTAGAGGGCACGAGCGAAGAGTGGAGTTGTAAAGTATAGTTGTTAAGTTTGGAAAGTTGTTTTGTTGTCATGCCTATAACGTAAAAAGTTAACAAGTCATGAATGTTCTGCCCACAATGAGTTTAAGAATTTCTTGGGGCAAACAAGGAGTCTTCCCCAACTCCTACTCCTTGGGCCAAACATGCCCTTATTGTTTTGTTGGATACATATAAAGAATCTCAATTTTGTCACAAGATTTTAGACAGTTTTAATCGTGCTTATGCACATTGTTACTTGACCTTAGCCTTTGTAAAACAATGAGCAACTTTGCATTTTGGATCCACATGAACCTAAGTCTGTGTGATGAGTTATAATGCTTGAATCACTCAATAAGTTTCTTAGTTGAAGATTTGAACTAGAAGAAACCAGGTGAAAAGGATGGCATGATTATCATCATCTTGAAAAAGCAAGATAGGAAAGGTTGCCTGATCTTCTTTCCTTCATGGTTTCGTCATATTTTCCTGGGACTCTTTCAGAACTTTTTCATTCTGATATGTTATTCATACTAATTTGATGTGTTTATTTCGTAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGAAATGCTTGTAGTTAAAGAGTCAACCAGAGTGTATTCTGTGGAGTCGAGAAAAACATAGAACCTCATCCTCTGCTTTAAGCTGAATCTGTGCCCCCATATATGGCTTGATAAGTTCTTGCGGTATAAGGATATGAAGGGTCCAGCATGTCTAGATGGAAACTCTTACAGAAACTTAGAACACCCCTGTCACTTGACATATCTGCTACTTCGCTAACTCTATGAAATAATTTGTGGACTCTGGTTTTTTAGTTCACTGATTTATTCCACGTTAGCACAGTGCATGTTACCATTTTCTCCATTTAGTGCTCATGTAAACTGCAGTTTTTTTTGTACAATTATTAGCAGCTGCCATGTAATAATAATTTCTACATTCTTTCAATTTTCTGAATCCATATTATACTCTCACCATTAATATTCTGCTTCATAATTATCAGATATATTATCGTATTAGGTGGGTTCACATTCACAATGTTTAGGTTCTCTCTCCTGACCAAGAACAATGTTGCCACTTGGCGGTTGCATTTACCTTTTACATGGTTTTTTCCCCCAACAGATGACTTTATCTTTGTTGACATACTCAACCACTATCATTTCCTAGCGTCTGGAGGTCCCGTTTTGTTATACTTCAACCAAAAAGAGGCCCAGGATTGAGCTGAACCCGCTGACGATTCCGATGTGATTGCTTTCTACGTTAATTCTGGATTCATCTTGGCCTGGACATCAACAGCTCTCAGTTTTGGATTTGTAGAATACTCATTTCGACTTCTGAGGTACTCATTATCCTTCCTTGTTATGAAACTGATGATGCAACATCTGAATTCGCATGATAGTTAACAAAGTATAAAACTAAGTGATACACCAACCCTCCTTTGTTTTTTAGACCAATTTTGTAGAAGCCTTATTTTCTTTGGTCTTTTAAAAATATGAAAAGCACTTGGATAATATTGTTTTTGTTCTGTGCAGAAGCCTATTTTTAAAAAATTTACTCAACGTGTTTTTTGCGTTTGAATATAGTCTTGTTTTTCAAATTAGAAACATGATCTCGCTCCTCAAAATGTTTCAAATAAAAGATTACATTGGCTATTAGTTGTTCTAAAAGACAATGTCGATTTAATTATGCCAATCATTTAATGATATTGTTATTACTACTATTTTTCTATATAACACTTGATTGTTCTCAAGCATTAAACAAACTTTTTGTTTCCTAGTGTGCAACTCGCAAGTTTTTAACAACCAACATTTTATATTTAATCTTACGAAATATTTTAGTCAGAAATTGCATGCATAGTCAAATAGATATTCCTTATTTGTTTAGAATATCTCCTCCCAATACATCACGGCCTTAGTCTACAAAATTCCTTGATATAAATTTAAATAAGCTCTAGTTAATAGTTCCGAAGCACTGATTGGATGAATGTCCCAAAGAGAAAAAAGGAAAAAGAAAAAAAAAAAAACTTAGCTATATTAGGAAGGAAAAACGACAACCTTACTTAAACAAGATTTATTCTATTGTACAACTGTGTCTTTGAGTTCTAAAAGACTAGGATGGAAAAATGTTCTAGTACATGTAGTGATTCACTTATTCTTTCCAGTTGGGTTGGATCATTAAACCAAATGGAATAGTACCACTTTATTCTTTCTATAGGAGAATTTCAGTACAACACTTATCTTAGTGTGTAATCACAATAGCCCTACCATTACAAGTTGTTTGCTCTTTAATATAAATTGTGTCAATGATAGGGAAAAAAAAGTGTGGATAACGATAGTTGGATGGAGGAATGGGGCAAATGTAGTAGGTAAAGCAAATCCAAAGCTTTAAAACAAGTTTGTCAAAGACCAACCTAATCTGCGCTCATCAGGAACAGTTGACTTAGCCGTGAAGGATAGAGTGTTTCACAAGTTGATCAATTGCCAACGTTTTAATATAAATTTGGTCAAAACCAAGCTTGAGTTTTGTGTCTCTTTGTAAGGCATTGACCCTCTCTCTTAAATGACACTTTATTATTCCTCTTTCAGGCCAAGTCATAGGTTCCAAGCTTTAAATATTCAGGAGGTGTTGCTAAAATGAGCATAGCTCAATTGACATGAACTAATATTATCAACCTTGAAGTCTGAGGTTTGATTTTTTCACCCCACATATTGTCAAAAGAAGAAAAAAAAATATATATATATATATATTCTTGGGATATCCACATAGGCTTGAATTTAATACTCTTTTTTCAGGAAAATTTGATTACAAACGCTTCAAGTGGCAGAATTCTAGTCGTTAGGCAGTGTGTTTCCATGAGCCAATTGCGTAGGCAAATTTAGAGTTGAAGGTTGGCATTGGCAATTGGCAAAATTATAGAGTGATGTTGAGGATTGCAAATGTAAACGATGGAAAAGTTCAGAGAGTAGCTCCTACAAATAAAGAGTTCCTACTTAGTTTGGTTTATAAGTTTATTAGGGTTCATTTCTAGTAATTTGATTAGAAAAATACTAACATGTATCTTGAGTTACCTATCTTTGTG

mRNA sequence

AACTCAGCGTGAAATGTGAAGACAGAATATTTCGCGGGGCGAACATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGAAATGCTTGTAGTTAAAGAGTCAACCAGAGTGTATTCTGTGGAGTCGAGAAAAACATAGAACCTCATCCTCTGCTTTAAGCTGAATCTGTGCCCCCATATATGGCTTGATAAGTTCTTGCGGTATAAGGATATGAAGGGTCCAGCATGTCTAGATGGAAACTCTTACAGAAACTTAGAACACCCCTGTCACTTGACATATCTGCTACTTCGCTAACTCTATGAAATAATTTGTGGACTCTGGTTTTTTAGTTCACTGATTTATTCCACGTTAGCACAGTGCATGTTACCATTTTCTCCATTTAGTGCTCATGTAAACTGCAGTTTTTTTTGTACAATTATTAGCAGCTGCCATGTAATAATAATTTCTACATTCTTTCAATTTTCTGAATCCATATTATACTCTCACCATTAATATTCTGCTTCATAATTATCAGATATATTATCGTATTAGGTGGGTTCACATTCACAATGTTTAGGTTCTCTCTCCTGACCAAGAACAATGTTGCCACTTGGCGGTTGCATTTACCTTTTACATGGTTTTTTCCCCCAACAGATGACTTTATCTTTGTTGACATACTCAACCACTATCATTTCCTAGCGTCTGGAGGTCCCGTTTTGTTATACTTCAACCAAAAAGAGGCCCAGGATTGAGCTGAACCCGCTGACGATTCCGATGTGATTGCTTTCTACGTTAATTCTGGATTCATCTTGGCCTGGACATCAACAGCTCTCAGTTTTGGATTTGTAGAATACTCATTTCGACTTCTGAGGCCAAGTCATAGGTTCCAAGCTTTAAATATTCAGGAGGTGTTGCTAAAATGAGCATAGCTCAATTGACATGAACTAATATTATCAACCTTGAAGTCTGAGGAAAATTTGATTACAAACGCTTCAAGTGGCAGAATTCTAGTCGTTAGGCAGTGTGTTTCCATGAGCCAATTGCGTAGGCAAATTTAGAGTTGAAGGTTGGCATTGGCAATTGGCAAAATTATAGAGTGATGTTGAGGATTGCAAATGTAAACGATGGAAAAGTTCAGAGAGTAGCTCCTACAAATAAAGAGTTCCTACTTAGTTTGGTTTATAAGTTTATTAGGGTTCATTTCTAGTAATTTGATTAGAAAAATACTAACATGTATCTTGAGTTACCTATCTTTGTG

Coding sequence (CDS)

ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGA

Protein sequence

MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD

Homology

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BLAST of ClCG02G019170 vs. Swiss-Prot
Match: BL1S1_ARATH (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 81/132 (61.36%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 24  ETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGV 83
           E E+   +   LE SLLQ+++D+  +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV
Sbjct: 19  EKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGV 78

Query: 84  QESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCK 143
           +E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+AVKEIGDFENW+KT++FDCK
Sbjct: 79  EECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDFENWMKTMEFDCK 138

Query: 144 SITTAIQNIYQD 156
            IT AI+NI++D
Sbjct: 139 KITAAIRNIHED 150

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BLAST of ClCG02G019170 vs. Swiss-Prot
Match: BL1S1_XENTR (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 3.7e-20
Identity = 45/116 (38.79%), Postives = 74/116 (63.79%), Query Frame = 1


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L T  A+F KQT QW++     N A+KEIGD ENW ++I+ D + I TA++ +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of ClCG02G019170 vs. Swiss-Prot
Match: BL1S1_BOVIN (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 41/116 (35.34%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L    A+F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA++ +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

[Close]

BLAST of ClCG02G019170 vs. Swiss-Prot
Match: BL1S1_DICDI (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium discoideum GN=bloc1s1 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 49/115 (42.61%), Postives = 68/115 (59.13%), Query Frame = 1


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L ++V DH     KL+E +E  KK+AI     V++ L+D+VN GV   F NQK +E E R
Sbjct: 2   LSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEAR 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIY 154
            L    A+F+KQT+QW+      N ++KEIGD ENW K I+ D  +I+  I+ +Y
Sbjct: 62  LLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY 116

[Close]

BLAST of ClCG02G019170 vs. Swiss-Prot
Match: BL1S1_HUMAN (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 41/116 (35.34%), Postives = 73/116 (62.93%), Query Frame = 1


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 30  LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 89

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L    A+F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA++ +Y+
Sbjct: 90  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of ClCG02G019170 vs. TrEMBL
Match: A0A0A0KEG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G216920 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.5e-55
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SSSG SRPDLPV PNR KFQSETERL++DVGGLE SLLQMV DH YASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVK 127
           LNTAVK
Sbjct: 121 LNTAVK 126

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BLAST of ClCG02G019170 vs. TrEMBL
Match: A0A067LMV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17336 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.1e-50
Identity = 99/145 (68.28%), Postives = 124/145 (85.52%), Query Frame = 1


Query: 10  PDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAV 69
           P LP+A  R     + ++  ++ GGLE SLLQ++ DHH  SL+LR+ +EKAKKDAI+ AV
Sbjct: 4   PQLPLARTRVVSPQDVDKSQAEPGGLEASLLQLMQDHHNTSLRLRDRTEKAKKDAIRNAV 63

Query: 70  RVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIG 129
           RVSDLL+DAVNGGVQESF+N+K IELEIRALA TI+RF +QTDQWLAATHA+NTA+KEIG
Sbjct: 64  RVSDLLMDAVNGGVQESFINEKRIELEIRALAVTISRFMRQTDQWLAATHAINTAIKEIG 123

Query: 130 DFENWIKTIDFDCKSITTAIQNIYQ 155
           DFENW+KT++FDCKSI+TAI+NI+Q
Sbjct: 124 DFENWMKTMEFDCKSISTAIRNIHQ 148

[Close]

BLAST of ClCG02G019170 vs. TrEMBL
Match: B9RVF7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1135500 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-48
Identity = 95/147 (64.63%), Postives = 118/147 (80.27%), Query Frame = 1


Query: 8   SRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQK 67
           S P LP+A  R     E ++   + G LEGSLLQ++ DHH  SL+LREN+EKAKKDAI+K
Sbjct: 2   SSPQLPLARPRVASPWEIDKPQPEPGSLEGSLLQLIQDHHQTSLRLRENTEKAKKDAIRK 61

Query: 68  AVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKE 127
           A +VS LL+DAVNGGVQESF+N+K IE EIRALA T++RF +QTD WL ATHA+NTA+KE
Sbjct: 62  AAKVSGLLMDAVNGGVQESFINEKRIEFEIRALAATVSRFMRQTDHWLTATHAINTAIKE 121

Query: 128 IGDFENWIKTIDFDCKSITTAIQNIYQ 155
           IGDFENW+KT++FDCKSI  AI+ I+Q
Sbjct: 122 IGDFENWLKTMEFDCKSINAAIRTIHQ 148

[Close]

BLAST of ClCG02G019170 vs. TrEMBL
Match: A0A0D2QRK9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G151600 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.5e-47
Identity = 100/146 (68.49%), Postives = 119/146 (81.51%), Query Frame = 1


Query: 10  PDLPVAPNRGKFQSETERLSSDVGG-LEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKA 69
           P LP    R    SE  +  +  GG LE SL+Q+ + HH+ SLKLR+ +EKAKKDAI+KA
Sbjct: 4   PQLPQTRGRVLSSSEINKSPAGSGGDLESSLIQIYHHHHHNSLKLRDQAEKAKKDAIKKA 63

Query: 70  VRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEI 129
            RVSDLLV+AVNGGVQESF+N+K IE EIRALA+TIARF KQTDQWLAA+HA+NTAVKEI
Sbjct: 64  GRVSDLLVEAVNGGVQESFINEKRIEAEIRALASTIARFMKQTDQWLAASHAINTAVKEI 123

Query: 130 GDFENWIKTIDFDCKSITTAIQNIYQ 155
           GDFENW+K++DFDCKSI  AI+NIYQ
Sbjct: 124 GDFENWMKSMDFDCKSINAAIRNIYQ 149

[Close]

BLAST of ClCG02G019170 vs. TrEMBL
Match: D7SJL9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07760 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-47
Identity = 95/143 (66.43%), Postives = 116/143 (81.12%), Query Frame = 1


Query: 12  LPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRV 71
           LPVA  R    +E ER ++D  GLE SLLQ++ DHH  SLKLR+ +EKAK DAI+ A+RV
Sbjct: 6   LPVARARVLSPAEIERPNADPSGLEASLLQLIQDHHQTSLKLRDETEKAKNDAIRTAMRV 65

Query: 72  SDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDF 131
           SDLLVD VNGGVQE+F+N+K IELE RAL  T+ RF KQT QWLAA+HA+NTA+KEIGDF
Sbjct: 66  SDLLVDTVNGGVQEAFINEKRIELESRALTATVIRFAKQTHQWLAASHAINTAIKEIGDF 125

Query: 132 ENWIKTIDFDCKSITTAIQNIYQ 155
           ENW+KT+DFDC+SI  AI+NI+Q
Sbjct: 126 ENWMKTMDFDCRSINAAIRNIHQ 148

[Close]

BLAST of ClCG02G019170 vs. TAIR10
Match: AT2G30330.1 (AT2G30330.1 GCN5L1 family protein)

HSP 1 Score: 170.2 bits (430), Expect = 9.7e-43
Identity = 81/132 (61.36%), Postives = 106/132 (80.30%), Query Frame = 1


Query: 24  ETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGV 83
           E E+   +   LE SLLQ+++D+  +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV
Sbjct: 19  EKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGV 78

Query: 84  QESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCK 143
           +E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+AVKEIGDFENW+KT++FDCK
Sbjct: 79  EECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDFENWMKTMEFDCK 138

Query: 144 SITTAIQNIYQD 156
            IT AI+NI++D
Sbjct: 139 KITAAIRNIHED 150

[Close]

BLAST of ClCG02G019170 vs. NCBI nr
Match: gi|778714078|ref|XP_011657181.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis sativus])

HSP 1 Score: 282.7 bits (722), Expect = 3.8e-73
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 1


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SSSG SRPDLPV PNR KFQSETERL++DVGGLE SLLQMV DH YASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of ClCG02G019170 vs. NCBI nr
Match: gi|659127650|ref|XP_008463815.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo])

HSP 1 Score: 282.7 bits (722), Expect = 3.8e-73
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 1


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SS G SRPDLPV PNRGKFQS+TERLS+DVGGLE SLLQMV+DH YASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of ClCG02G019170 vs. NCBI nr
Match: gi|700192020|gb|KGN47224.1| (hypothetical protein Csa_6G216920 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 2.1e-55
Identity = 116/126 (92.06%), Postives = 118/126 (93.65%), Query Frame = 1


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SSSG SRPDLPV PNR KFQSETERL++DVGGLE SLLQMV DH YASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVK 127
           LNTAVK
Sbjct: 121 LNTAVK 126

[Close]

BLAST of ClCG02G019170 vs. NCBI nr
Match: gi|802540808|ref|XP_012078383.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatropha curcas])

HSP 1 Score: 207.6 bits (527), Expect = 1.6e-50
Identity = 99/145 (68.28%), Postives = 124/145 (85.52%), Query Frame = 1


Query: 10  PDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAV 69
           P LP+A  R     + ++  ++ GGLE SLLQ++ DHH  SL+LR+ +EKAKKDAI+ AV
Sbjct: 4   PQLPLARTRVVSPQDVDKSQAEPGGLEASLLQLMQDHHNTSLRLRDRTEKAKKDAIRNAV 63

Query: 70  RVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIG 129
           RVSDLL+DAVNGGVQESF+N+K IELEIRALA TI+RF +QTDQWLAATHA+NTA+KEIG
Sbjct: 64  RVSDLLMDAVNGGVQESFINEKRIELEIRALAVTISRFMRQTDQWLAATHAINTAIKEIG 123

Query: 130 DFENWIKTIDFDCKSITTAIQNIYQ 155
           DFENW+KT++FDCKSI+TAI+NI+Q
Sbjct: 124 DFENWMKTMEFDCKSISTAIRNIHQ 148

[Close]

BLAST of ClCG02G019170 vs. NCBI nr
Match: gi|255553369|ref|XP_002517726.1| (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Ricinus communis])

HSP 1 Score: 198.4 bits (503), Expect = 9.4e-48
Identity = 95/147 (64.63%), Postives = 118/147 (80.27%), Query Frame = 1


Query: 8   SRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQK 67
           S P LP+A  R     E ++   + G LEGSLLQ++ DHH  SL+LREN+EKAKKDAI+K
Sbjct: 2   SSPQLPLARPRVASPWEIDKPQPEPGSLEGSLLQLIQDHHQTSLRLRENTEKAKKDAIRK 61

Query: 68  AVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKE 127
           A +VS LL+DAVNGGVQESF+N+K IE EIRALA T++RF +QTD WL ATHA+NTA+KE
Sbjct: 62  AAKVSGLLMDAVNGGVQESFINEKRIEFEIRALAATVSRFMRQTDHWLTATHAINTAIKE 121

Query: 128 IGDFENWIKTIDFDCKSITTAIQNIYQ 155
           IGDFENW+KT++FDCKSI  AI+ I+Q
Sbjct: 122 IGDFENWLKTMEFDCKSINAAIRTIHQ 148

The following BLAST results are available for this feature:

BLAST of ClCG02G019170 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BL1S1_ARATH	1.7e-41	61.36	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
BL1S1_XENTR	3.7e-20	38.79	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
BL1S1_BOVIN	1.6e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus GN=B...	[more]
BL1S1_DICDI	1.6e-18	42.61	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium d...	[more]
BL1S1_HUMAN	1.6e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens GN...	[more]

BLAST of ClCG02G019170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEG1_CUCSA	1.5e-55	92.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G216920 PE=4 SV=1	[more]
A0A067LMV0_JATCU	1.1e-50	68.28	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17336 PE=4 SV=1	[more]
B9RVF7_RICCO	6.6e-48	64.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1135500 PE=4 SV=1	[more]
A0A0D2QRK9_GOSRA	2.5e-47	68.49	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G151600 PE=4 SV=1	[more]
D7SJL9_VITVI	4.3e-47	66.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07760 PE=4 SV=...	[more]

BLAST of ClCG02G019170 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G30330.1	9.7e-43	61.36	GCN5L1 family protein	[more]

BLAST of ClCG02G019170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778714078\|ref\|XP_011657181.1\|	3.8e-73	92.90	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]
gi\|659127650\|ref\|XP_008463815.1\|	3.8e-73	92.90	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]
gi\|700192020\|gb\|KGN47224.1\|	2.1e-55	92.06	hypothetical protein Csa_6G216920 [Cucumis sativus]	[more]
gi\|802540808\|ref\|XP_012078383.1\|	1.6e-50	68.28	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Jatrop...	[more]
gi\|255553369\|ref\|XP_002517726.1\|	9.4e-48	64.63	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Ricinu...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009395	BLOC1S1

Vocabulary: **Cellular Component**
Term	Definition
GO:0031083	BLOC-1 complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0045324	late endosome to vacuole transport
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008150	biological_process
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0016197	endosomal transport
biological_process	GO:0048364	root development
cellular_component	GO:0031083	BLOC-1 complex
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0020037	heme binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004601	peroxidase activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G019170.1	ClCG02G019170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 score: 5.1
None	No IPR available	PANTHER	PTHR13073	GCN5-RELATED	coord: 34..155 score: 2.2
None	No IPR available	PANTHER	PTHR13073:SF0	BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 1	coord: 34..155 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G019170	Csa6G216920	Cucumber (Chinese Long) v2	cuwcgB446
ClCG02G019170	MELO3C025682	Melon (DHL92) v3.5.1	mewcgB098
ClCG02G019170	Cla013406	Watermelon (97103) v1	wcgwmB197
ClCG02G019170	Bhi10G000673	Wax gourd	wcgwgoB298
ClCG02G019170	CSPI06G15100	Wild cucumber (PI 183967)	cpiwcgB466
ClCG02G019170	CmaCh20G003150	Cucurbita maxima (Rimu)	cmawcgB481
ClCG02G019170	CmaCh02G007080	Cucurbita maxima (Rimu)	cmawcgB527
ClCG02G019170	CmoCh02G007090	Cucurbita moschata (Rifu)	cmowcgB525
ClCG02G019170	Lsi10G014710	Bottle gourd (USVL1VR-Ls)	lsiwcgB054
ClCG02G019170	Cp4.1LG05g09980	Cucurbita pepo (Zucchini)	cpewcgB658
ClCG02G019170	CsGy6G015250	Cucumber (Gy14) v2	cgybwcgB417
ClCG02G019170	MELO3C025682.2	Melon (DHL92) v3.6.1	medwcgB087
ClCG02G019170	Carg11764	Silver-seed gourd	carwcgB1027
ClCG02G019170	CsaV3_6G019000	Cucumber (Chinese Long) v3	cucwcgB474

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G019170	Melon (DHL92) v3.6.1	medwcgB103
ClCG02G019170	Silver-seed gourd	carwcgB0327
ClCG02G019170	Cucumber (Chinese Long) v3	cucwcgB404
ClCG02G019170	Watermelon (97103) v2	wcgwmbB138
ClCG02G019170	Watermelon (97103) v2	wcgwmbB165
ClCG02G019170	Cucurbita maxima (Rimu)	cmawcgB400
ClCG02G019170	Cucurbita moschata (Rifu)	cmowcgB398
ClCG02G019170	Cucurbita moschata (Rifu)	cmowcgB479
ClCG02G019170	Cucurbita moschata (Rifu)	cmowcgB577
ClCG02G019170	Cucurbita pepo (Zucchini)	cpewcgB068
ClCG02G019170	Cucurbita pepo (Zucchini)	cpewcgB266