CmoCh02G005760 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G005760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionB3 DNA-binding domain protein
LocationCmo_Chr02 : 3370604 .. 3372205 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAACAATCTCTCCGGATGGCTTTCTTCACTTCACCGATTCCCCATTTCTTCAAGATCATTCTCCACCACACTCTCATCGAACGAAAGCTTGTAAGCAACCTAATCCAATCCACATTCTCTCTGATCCCTTCATTTTCTTATCAATTTCTTTTTTTGCAGGATCTTCCAAACAAGTTTGTTATCAACAATCGCGCTTCTTTGCTACACAACAACGCCACTCTCACCCTTCCGGACGGCGCAAACTGGGAGGTCGAACTCAAGAAATCGGATGGCAAAGTATCGTTCGCAAGAGGCTGGCCGGAGTTCGTGGAGTTTTACAATGTGAAAGCTGGATATTTCGTGGTTTTCAGATTGGAAGGAAATCGGTGCTTCAATGTTCTCATTTTCGACTTGAGTGCTACGGAAATCGATTATCCGATCAAACCGAGGATCTTCCGCCGGCTGCGTAAGGATCACACCAGAGCCTTCGATCGCCGCCCGCCGATTCTGCTTCCGAAGAGCGAGAACGAAGATGATGAGGACGACTCTGTTGTTGTGTTAAACGACGCCGTTTCGAGGAAGAGGAAAAGAGAAAAAGATCACGAAGCTGCATTTTGTTCCCTACGCGAGATGAAGAAGATGATGAGGACGAACATGAAGATAAAGCATCAACGATTCACTACACCTCAACGATTCAGCGATGATGAAGAAGAAGACGAAGACGAAGACGAAGACGAAGACGAAGAAGAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGATTACTCGTGGAGACAGAGGAAGTACAGAGGATCAGGTTCGTTCGCAAAAACTCTATAAATTTCAATTTCAATTTCAATTTCAGCAAGCGGTACCAAAATTGGATGAATTCTCACCGATTTCAGCGCGTAATCACGAAGACGGCGGCCGATTTAGTCCAGAATCGATGAGACCTATGCATCCTCCAAGGACGCCGAAGCCATTAACGGAGAATCAAGAGCGAGTTCTGAGAATAGCGAGTTCGTTCAAATTGAGGACGAAGAATCCTTCATTCATGGTAACGATGAGGCCTTCCTACATCCAAACAGGAAATTACCTGGTAAGAAGAAAACAACGAAATGGAATGATTCTCAATTGAAACAGTGATTGAACAATGATTTCTGCAATGCGTAGAGTTTGCCGAGAAGCTTTGCGGAGAGGTACCTGCAAGAATCGACGGACGTGAAGCTGGAAGTGGCGGACGGGAGGATTTGGAGCGTGTGGTGCGGTGTACGGTGGGCGTTTACGAGGCGGCGGACGGAGTTGAAATGCGGTTGGAAGAGATTCGCTGTGGATAATCAGTTGAAGGAAGGGGACGTGTGTGTGTTCGAATTGATGAACAGAATCCCCAAAGTGTTCTTCAAAGTCACTATTTTCCGGCGACCGGCTAACTGAATTCATCAGTTTCCCGCTTTTTCTATTTCTTTTTATTGGCACCCTTTCTGCTTCAACCCGTGACTGTTTAACCTCACCCTACATACGTCACAGGCACATATAGAATTTCAGTTTATCTATAAATGCTTTTTGTTAGGTGGTCCCGTCAAATCGTATTTTCATAAATAATAATAATCCAAAAATTTAAA

mRNA sequence

CAAACAATCTCTCCGGATGGCTTTCTTCACTTCACCGATTCCCCATTTCTTCAAGATCATTCTCCACCACACTCTCATCGAACGAAAGCTTGATCTTCCAAACAAGTTTGTTATCAACAATCGCGCTTCTTTGCTACACAACAACGCCACTCTCACCCTTCCGGACGGCGCAAACTGGGAGGTCGAACTCAAGAAATCGGATGGCAAAGTATCGTTCGCAAGAGGCTGGCCGGAGTTCGTGGAGTTTTACAATGTGAAAGCTGGATATTTCGTGGTTTTCAGATTGGAAGGAAATCGGTGCTTCAATGTTCTCATTTTCGACTTGAGTGCTACGGAAATCGATTATCCGATCAAACCGAGGATCTTCCGCCGGCTGCGTAAGGATCACACCAGAGCCTTCGATCGCCGCCCGCCGATTCTGCTTCCGAAGAGCGAGAACGAAGATGATGAGGACGACTCTGTTGTTGTGTTAAACGACGCCGTTTCGAGGAAGAGGAAAAGAGAAAAAGATCACGAAGCTGCATTTTGTTCCCTACGCGAGATGAAGAAGATGATGAGGACGAACATGAAGATAAAGCATCAACGATTCACTACACCTCAACGATTCAGCGATGATGAAGAAGAAGACGAAGACGAAGACGAAGACGAAGACGAAGAAGAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGATTACTCGTGGAGACAGAGGAAGTACAGAGGATCAGCGCGTAATCACGAAGACGGCGGCCGATTTAGTCCAGAATCGATGAGACCTATGCATCCTCCAAGGACGCCGAAGCCATTAACGGAGAATCAAGAGCGAGTTCTGAGAATAGCGAGTTCGTTCAAATTGAGGACGAAGAATCCTTCATTCATGGTAACGATGAGGCCTTCCTACATCCAAACAGGAAATTACCTGAGTTTGCCGAGAAGCTTTGCGGAGAGGTACCTGCAAGAATCGACGGACGTGAAGCTGGAAGTGGCGGACGGGAGGATTTGGAGCGTGTGGTGCGGTGTACGGTGGGCGTTTACGAGGCGGCGGACGGAGTTGAAATGCGGTTGGAAGAGATTCGCTGTGGATAATCAGTTGAAGGAAGGGGACGTGTGTGTGTTCGAATTGATGAACAGAATCCCCAAAGTGTTCTTCAAAGTCACTATTTTCCGGCGACCGGCTAACTGAATTCATCAGTTTCCCGCTTTTTCTATTTCTTTTTATTGGCACCCTTTCTGCTTCAACCCGTGACTGTTTAACCTCACCCTACATACGTCACAGGCACATATAGAATTTCAGTTTATCTATAAATGCTTTTTGTTAGGTGGTCCCGTCAAATCGTATTTTCATAAATAATAATAATCCAAAAATTTAAA

Coding sequence (CDS)

ATGGCTTTCTTCACTTCACCGATTCCCCATTTCTTCAAGATCATTCTCCACCACACTCTCATCGAACGAAAGCTTGATCTTCCAAACAAGTTTGTTATCAACAATCGCGCTTCTTTGCTACACAACAACGCCACTCTCACCCTTCCGGACGGCGCAAACTGGGAGGTCGAACTCAAGAAATCGGATGGCAAAGTATCGTTCGCAAGAGGCTGGCCGGAGTTCGTGGAGTTTTACAATGTGAAAGCTGGATATTTCGTGGTTTTCAGATTGGAAGGAAATCGGTGCTTCAATGTTCTCATTTTCGACTTGAGTGCTACGGAAATCGATTATCCGATCAAACCGAGGATCTTCCGCCGGCTGCGTAAGGATCACACCAGAGCCTTCGATCGCCGCCCGCCGATTCTGCTTCCGAAGAGCGAGAACGAAGATGATGAGGACGACTCTGTTGTTGTGTTAAACGACGCCGTTTCGAGGAAGAGGAAAAGAGAAAAAGATCACGAAGCTGCATTTTGTTCCCTACGCGAGATGAAGAAGATGATGAGGACGAACATGAAGATAAAGCATCAACGATTCACTACACCTCAACGATTCAGCGATGATGAAGAAGAAGACGAAGACGAAGACGAAGACGAAGACGAAGAAGAAGAAGAAGACGAAGAAGACGACGAAGAAGAAGATTACTCGTGGAGACAGAGGAAGTACAGAGGATCAGCGCGTAATCACGAAGACGGCGGCCGATTTAGTCCAGAATCGATGAGACCTATGCATCCTCCAAGGACGCCGAAGCCATTAACGGAGAATCAAGAGCGAGTTCTGAGAATAGCGAGTTCGTTCAAATTGAGGACGAAGAATCCTTCATTCATGGTAACGATGAGGCCTTCCTACATCCAAACAGGAAATTACCTGAGTTTGCCGAGAAGCTTTGCGGAGAGGTACCTGCAAGAATCGACGGACGTGAAGCTGGAAGTGGCGGACGGGAGGATTTGGAGCGTGTGGTGCGGTGTACGGTGGGCGTTTACGAGGCGGCGGACGGAGTTGAAATGCGGTTGGAAGAGATTCGCTGTGGATAATCAGTTGAAGGAAGGGGACGTGTGTGTGTTCGAATTGATGAACAGAATCCCCAAAGTGTTCTTCAAAGTCACTATTTTCCGGCGACCGGCTAACTGA
Homology
[Close]
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.3e-21
Identity = 115/379 (30.34%), Postives = 177/379 (46.70%), Query Frame = 1 

Query: 7   PIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKVS 66
           P P F K+I   T+ E++L +P+KFV   +  L    A LT+PDG  W V L+K+D K+ 
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVA-LTVPDGHVWRVGLRKADNKIW 61

Query: 67  FARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKDHTR 126
           F  GW EFV+ Y+++ GY ++FR EGN  F+V IF+LS +EI+Y     +      D   
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLM------DSAH 121

Query: 127 AFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEAAFCSLREMKKMMRTNMKI 186
              +R  +     E+ +DED  V+  +                  +   ++ +    +K 
Sbjct: 122 NHFKRARLF----EDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKA 181

Query: 187 KHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNHEDGGR 246
           +     TP      +   + ++ D +E       DD+ E+ S    K+  SA   +    
Sbjct: 182 EE---PTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRS----KFYESASARK---- 241

Query: 247 FSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYLSLPR 306
                       RT     E +ER +  A +F+       F V +RPSY+  G  + LP 
Sbjct: 242 ------------RT--VTAEERERAINAAKTFEPTNPF--FRVVLRPSYLYRGCIMYLPS 301

Query: 307 SFAERYLQE-STDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKEGDVC 366
            FAE+YL   S  +K+++A+ + W V C     +   R +   GW  F ++N L EGDVC
Sbjct: 302 GFAEKYLSGISGFIKVQLAE-KQWPVRC----LYKAGRAKFSQGWYEFTLENNLGEGDVC 336

Query: 367 VFELMNRIPKVFFKVTIFR 385
           VFEL+ R      KVT FR
Sbjct: 362 VFELL-RTRDFVLKVTAFR 336

[Close]
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 3.1e-15
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = 1 

Query: 8   IPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKVSF 67
           +  F KIIL   +IE+ + +P +FV       L +N TL  P G    + +K+   +V F
Sbjct: 31  VKKFIKIILLSRIIEKMMKVPARFV--RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWF 90

Query: 68  ARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKDHTRA 127
            +GW EF E +++  G+F+ F  EG+ CF V+IFD+SA+EI+YP+          D T  
Sbjct: 91  EKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL----------DDTD- 150

Query: 128 FDRRPPILLPKSEN----EDDEDDSVVVLNDAVSRKRKRE 164
            D R  ++    +     E  +DD  VV  D + +K+K++
Sbjct: 151 -DNREEVMDDDEQGFTGFESSDDDGEVVDMDELLKKKKKK 176

[Close]
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-13
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 6   SPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKV 65
           SP+  FFK++L  T+ ++ + +P +FV   + S L    TL  P G    ++LK+   ++
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMKIPPRFV-KLQGSKLSEVVTLETPAGFKRSIKLKRIGEEI 84

Query: 66  SFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPI 113
            F  GW EF E ++++ G+F++F  + N  F V+IF++SA E  YP+
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-13
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 6   SPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKV 65
           SP+  FFK++L  T+ ++ + +P +FV   + S L    TL  P G    ++LK+   ++
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMRIPPRFV-KLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEI 84

Query: 66  SFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPI 113
            F  GW EF E ++++ G+F++F  + N  F V+IF+ SA E +YP+
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match: REM19_ARATH (B3 domain-containing protein REM19 OS=Arabidopsis thaliana GN=REM19 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.5e-13
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1 

Query: 266 ENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYLSLPRSFAERYLQE-STDVKLEVA 325
           E +ER +  A +F+    NP F V +RPSY+  G  + LP  FAE+YL   S  +KL++ 
Sbjct: 110 EERERAVNAAKTFE--PTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLG 169

Query: 326 DGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKEGDVCVFELMNRIPKVFFKVTIFR 385
           + + W V C     +   R +   GW  F ++N + EGDVCVFEL+ R      +VT FR
Sbjct: 170 E-KQWPVRC----LYKAGRAKFSQGWYEFTLENNIGEGDVCVFELL-RTRDFVLEVTAFR 221

[Close]
BLAST of CmoCh02G005760 vs. TrEMBL
Match: A0A0A0LM04_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287160 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 1.1e-120
Identity = 238/390 (61.03%), Postives = 284/390 (72.82%), Query Frame = 1 

Query: 1   MAFFTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKK 60
           M  FTSP PHFFKI+LH  L ++KLDLPNKFV NN  SLL NNATL+LPDG+ W  +L +
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLDLPNKFVKNNAHSLLFNNATLSLPDGSKWNFQLTR 60

Query: 61  SDGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRL 120
            DGK+ F RGWPEFV FY V+ GYF+VF+L+G  CFNVLIFD SATEIDYP+        
Sbjct: 61  LDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPM-------- 120

Query: 121 RKDHTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHE---AAFCSLREMK 180
                    RR P+++PKSE+ DDE +S+ +L++ V +KR+R +  E   +A+ SLREMK
Sbjct: 121 ---------RRLPVIVPKSES-DDEGESIQILHEEVLKKRRRMEKKEKETSAYYSLREMK 180

Query: 181 KMMRTNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGS 240
           K M+  + +K + FTTPQ FSDD                 DE++D E DYS RQ  YR S
Sbjct: 181 KNMKIKI-MKRREFTTPQGFSDD-----------------DEDEDLETDYSPRQTNYRAS 240

Query: 241 ARNHEDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQ 300
             N  + GR SPESMRPM+P +T + LTENQ  V+R ASSFK RTKNPSFMVTMRPSYIQ
Sbjct: 241 EYNEREDGRSSPESMRPMNPRKTQQVLTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQ 300

Query: 301 TGNYLSLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDN 360
           TGN LSLPR F+ERY++ES DVKLEV DGRIW VWCGVRWAFTRRRTELK GWKRFAVDN
Sbjct: 301 TGNCLSLPRIFSERYIKESVDVKLEVGDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDN 354

Query: 361 QLKEGDVCVFELMNRIPKVFFKVTIFRRPA 388
           +L+EGD+CVFELMN+ PKV F VTIFR P+
Sbjct: 361 ELEEGDICVFELMNKTPKVHFLVTIFRLPS 354

[Close]
BLAST of CmoCh02G005760 vs. TrEMBL
Match: A0A0A0LMR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292230 PE=4 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 8.0e-111
Identity = 229/385 (59.48%), Postives = 268/385 (69.61%), Query Frame = 1 

Query: 4   FTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDG 63
           F SP PHFFK+ILH TL ++KLDLPNKFV NN  SLL N  TL LPDGANW+++LKK DG
Sbjct: 5   FRSPNPHFFKVILHQTLTQQKLDLPNKFVKNNGGSLLFNKVTLFLPDGANWKIQLKKLDG 64

Query: 64  KVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKD 123
           K+ F RGWPEFV+FY+V+ G+F+VF+L+G  CFNVLIFD SATEIDYPI+          
Sbjct: 65  KICFRRGWPEFVQFYSVQPGHFLVFQLKGICCFNVLIFDTSATEIDYPIR---------- 124

Query: 124 HTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEA--AFCSLREMKKMMR 183
             R  D     L+PKS NED+E+ S+ +LN+ V +KR+ EK+ E   A+ SLR +KKMMR
Sbjct: 125 --RLLD-----LIPKSRNEDEEE-SIQILNEMVLKKRRMEKEEETPPAYRSLRGLKKMMR 184

Query: 184 TNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNH 243
            N K+K          + +     DEDE            D E D S RQ  +RG   N 
Sbjct: 185 KNAKVK---------IAKNRGITSDEDEG-----------DLEMDNSRRQSNHRGIVYNE 244

Query: 244 EDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNY 303
            D GR SPESMRPM+P +TP  LTENQ  V + AS FK R  NPSFMVTMRPSYIQTGNY
Sbjct: 245 GDDGRVSPESMRPMNPRKTPPALTENQLAVKKRASWFKSRRNNPSFMVTMRPSYIQTGNY 304

Query: 304 LSLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKE 363
           LSLPR F E+Y++ES DVKLEV DGR W VWCGVRWAFTRRRTELK GWKRFAVDN+LKE
Sbjct: 305 LSLPRRFGEKYIKESVDVKLEVGDGRCWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKE 351

Query: 364 GDVCVFELMNRIPKVFFKVTIFRRP 387
           GD+CVFELM +   V FKV IFR P
Sbjct: 365 GDICVFELMKKNGSVLFKVAIFRLP 351

[Close]
BLAST of CmoCh02G005760 vs. TrEMBL
Match: A0A0D2SWH2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G071300 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.4e-35
Identity = 128/388 (32.99%), Postives = 191/388 (49.23%), Query Frame = 1 

Query: 2   AFFTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKS 61
           + F S  PHFFKIIL  T+ ++KL +P KFV       L ++  LT+P G  W  +L KS
Sbjct: 11  SMFASKTPHFFKIILEATIRDKKLGIPRKFV-RKYGKGLSSSVLLTVPSGDTWHAQLTKS 70

Query: 62  DGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLR 121
           DG V F  GW  F E+Y+++ G+F+VFR EGN  F VLIFD+SA+EI+YP K  I     
Sbjct: 71  DGVVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKFLVLIFDMSASEIEYPCKSHI----- 130

Query: 122 KDHTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEAAFCSLREMKKMMR 181
           +DH    D +  + L   E +DD  D  +         RK++K            KK  R
Sbjct: 131 EDHNS--DDQVCLKLVNKEAKDDTCDGTLYETPPCKETRKKKK------------KKRSR 190

Query: 182 TNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNH 241
                  ++  T Q             +D++E++ EDE   E++  +   R        H
Sbjct: 191 PPCSKPRKKLKTTQ-------------KDKNEKDWEDESTSEDDMQTKVPRD------EH 250

Query: 242 EDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNY 301
             G                        ++ L+ ASSF  R++NP F+V M+PSYI  G  
Sbjct: 251 AFG--------------------VIEYDKALQRASSF--RSENPFFLVIMQPSYINPGRK 310

Query: 302 LSLPRSFAERYLQEST-DVKLEVADGRIWSVWCGVRWAFTRRRTELKC----GWKRFAVD 361
           + +P+ F  ++L+E+  D+ L  ++G+ WS      W +  R    K     GW++F +D
Sbjct: 311 MCIPKEFTMKFLKENLGDLTLCTSEGKTWST---QYWRYISRNKYTKAIIHIGWRQFMLD 333

Query: 362 NQLKEGDVCVFELMNRIPKVFFKVTIFR 385
           N L+ GDVCVFEL+++   +  KV I+R
Sbjct: 371 NNLEAGDVCVFELISQTESM-LKVIIYR 333

[Close]
BLAST of CmoCh02G005760 vs. TrEMBL
Match: A0A0D2RB72_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G071300 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.9e-35
Identity = 128/386 (33.16%), Postives = 190/386 (49.22%), Query Frame = 1 

Query: 4   FTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDG 63
           F S  PHFFKIIL  T+ ++KL +P KFV       L ++  LT+P G  W  +L KSDG
Sbjct: 2   FASKTPHFFKIILEATIRDKKLGIPRKFV-RKYGKGLSSSVLLTVPSGDTWHAQLTKSDG 61

Query: 64  KVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKD 123
            V F  GW  F E+Y+++ G+F+VFR EGN  F VLIFD+SA+EI+YP K  I     +D
Sbjct: 62  VVWFQNGWQAFAEYYSLQYGHFLVFRYEGNGKFLVLIFDMSASEIEYPCKSHI-----ED 121

Query: 124 HTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEAAFCSLREMKKMMRTN 183
           H    D +  + L   E +DD  D  +         RK++K            KK  R  
Sbjct: 122 HNS--DDQVCLKLVNKEAKDDTCDGTLYETPPCKETRKKKK------------KKRSRPP 181

Query: 184 MKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNHED 243
                ++  T Q             +D++E++ EDE   E++  +   R        H  
Sbjct: 182 CSKPRKKLKTTQ-------------KDKNEKDWEDESTSEDDMQTKVPRD------EHAF 241

Query: 244 GGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYLS 303
           G                        ++ L+ ASSF  R++NP F+V M+PSYI  G  + 
Sbjct: 242 G--------------------VIEYDKALQRASSF--RSENPFFLVIMQPSYINPGRKMC 301

Query: 304 LPRSFAERYLQEST-DVKLEVADGRIWSVWCGVRWAFTRRRTELKC----GWKRFAVDNQ 363
           +P+ F  ++L+E+  D+ L  ++G+ WS      W +  R    K     GW++F +DN 
Sbjct: 302 IPKEFTMKFLKENLGDLTLCTSEGKTWST---QYWRYISRNKYTKAIIHIGWRQFMLDNN 322

Query: 364 LKEGDVCVFELMNRIPKVFFKVTIFR 385
           L+ GDVCVFEL+++   +  KV I+R
Sbjct: 362 LEAGDVCVFELISQTESM-LKVIIYR 322

[Close]
BLAST of CmoCh02G005760 vs. TrEMBL
Match: A0A0B0MM46_GOSAR (B3 domain-containing transcription factor VRN1-like protein OS=Gossypium arboreum GN=F383_00685 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 7.0e-30
Identity = 130/393 (33.08%), Postives = 174/393 (44.27%), Query Frame = 1 

Query: 7   PIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKVS 66
           P P F K+IL  TL +RKL +P+ F+   R  L    A LT+PDG  W V +KK+D K  
Sbjct: 2   PRPFFHKLILSTTLQDRKLRIPDNFIKKFRDEL-SVAAALTVPDGHVWRVGIKKADNKAW 61

Query: 67  FARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKDHTR 126
           F  GW EFVE Y +  GYF++FR EGN  F+V IF+L  +EI+Y     +  +       
Sbjct: 62  FKEGWQEFVERYYISVGYFLIFRYEGNSAFSVSIFNLYNSEINYQTNALVGNQYNLGRQY 121

Query: 127 AFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKR-----KREKDHEA---------AFCS 186
            F+          E EDDE  S  + N     K        E +H A             
Sbjct: 122 PFE----------ELEDDECVSPALPNLFGGSKLNCINWSGEVNHHAPKGVNNQPIRGAE 181

Query: 187 LREMKKMMRTNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQR 246
           L ++KK  R     K Q+F                     E  EED     E+D   R R
Sbjct: 182 LPKLKKPGR-----KKQKF---------------------EPSEEDSSLGHEDDMEMRNR 241

Query: 247 KYRGSARNHEDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMR 306
            Y  ++                    R      E +ER +  A +F+    NP   V +R
Sbjct: 242 FYESAS-------------------ARKRIVTAEERERAINAAKAFE--PTNPFCRVVLR 301

Query: 307 PSYIQTGNYLSLPRSFAERYLQ-ESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWK 366
           PSY+  G  + LP  FAE++L   S  +KL++ DGR W V C  R      R +   GW 
Sbjct: 302 PSYLYRGCIMYLPSCFAEQHLSGVSGFIKLQLPDGRQWPVRCLYRGG----RAKFSQGWY 331

Query: 367 RFAVDNQLKEGDVCVFELMNRIPKVFFKVTIFR 385
            F ++N L EGDVCVFEL+ R  +   KVT+FR
Sbjct: 362 EFTLENNLGEGDVCVFELL-RSREFVLKVTVFR 331

[Close]
BLAST of CmoCh02G005760 vs. TAIR10
Match: AT3G18990.1 (AT3G18990.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 105.5 bits (262), Expect = 7.4e-23
Identity = 115/379 (30.34%), Postives = 177/379 (46.70%), Query Frame = 1 

Query: 7   PIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKVS 66
           P P F K+I   T+ E++L +P+KFV   +  L    A LT+PDG  W V L+K+D K+ 
Sbjct: 2   PRPFFHKLIFSSTIQEKRLRVPDKFVSKFKDELSVAVA-LTVPDGHVWRVGLRKADNKIW 61

Query: 67  FARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKDHTR 126
           F  GW EFV+ Y+++ GY ++FR EGN  F+V IF+LS +EI+Y     +      D   
Sbjct: 62  FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSHSEINYHSTGLM------DSAH 121

Query: 127 AFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEAAFCSLREMKKMMRTNMKI 186
              +R  +     E+ +DED  V+  +                  +   ++ +    +K 
Sbjct: 122 NHFKRARLF----EDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKA 181

Query: 187 KHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNHEDGGR 246
           +     TP      +   + ++ D +E       DD+ E+ S    K+  SA   +    
Sbjct: 182 EE---PTPTPKIPKKRGRKKKNADPEEINSSAPRDDDPENRS----KFYESASARK---- 241

Query: 247 FSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYLSLPR 306
                       RT     E +ER +  A +F+       F V +RPSY+  G  + LP 
Sbjct: 242 ------------RT--VTAEERERAINAAKTFEPTNPF--FRVVLRPSYLYRGCIMYLPS 301

Query: 307 SFAERYLQE-STDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKEGDVC 366
            FAE+YL   S  +K+++A+ + W V C     +   R +   GW  F ++N L EGDVC
Sbjct: 302 GFAEKYLSGISGFIKVQLAE-KQWPVRC----LYKAGRAKFSQGWYEFTLENNLGEGDVC 336

Query: 367 VFELMNRIPKVFFKVTIFR 385
           VFEL+ R      KVT FR
Sbjct: 362 VFELL-RTRDFVLKVTAFR 336

[Close]
BLAST of CmoCh02G005760 vs. TAIR10
Match: AT1G49475.1 (AT1G49475.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-16
Identity = 53/160 (33.12%), Postives = 85/160 (53.12%), Query Frame = 1 

Query: 8   IPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKVSF 67
           +  F KIIL   +IE+ + +P +FV       L +N TL  P G    + +K+   +V F
Sbjct: 31  VKKFIKIILLSRIIEKMMKVPARFV--RFGPKLTDNVTLQTPVGFKRSIRIKRIGDEVWF 90

Query: 68  ARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKDHTRA 127
            +GW EF E +++  G+F+ F  EG+ CF V+IFD+SA+EI+YP+          D T  
Sbjct: 91  EKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIFDVSASEIEYPL----------DDTD- 150

Query: 128 FDRRPPILLPKSEN----EDDEDDSVVVLNDAVSRKRKRE 164
            D R  ++    +     E  +DD  VV  D + +K+K++
Sbjct: 151 -DNREEVMDDDEQGFTGFESSDDDGEVVDMDELLKKKKKK 176

[Close]
BLAST of CmoCh02G005760 vs. TAIR10
Match: AT4G01580.1 (AT4G01580.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-14
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 6   SPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKV 65
           SP+  FFK++L  T+ ++ + +P +FV   + S L    TL  P G    ++LK+   ++
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMRIPPRFV-KLQGSKLSEVVTLVTPAGYKRSIKLKRIGEEI 84

Query: 66  SFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPI 113
            F  GW EF E ++++ G+F++F  + N  F V+IF+ SA E +YP+
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIFNASACETNYPL 130

[Close]
BLAST of CmoCh02G005760 vs. TAIR10
Match: AT3G18960.1 (AT3G18960.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-14
Identity = 37/107 (34.58%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 6   SPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDGKV 65
           SP+  FFK++L  T+ ++ + +P +FV   + S L    TL  P G    ++LK+   ++
Sbjct: 25  SPVKKFFKLVLPSTMKDKMMKIPPRFV-KLQGSKLSEVVTLETPAGFKRSIKLKRIGEEI 84

Query: 66  SFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPI 113
            F  GW EF E ++++ G+F++F  + N  F V+IF++SA E  YP+
Sbjct: 85  WFHEGWSEFAEAHSIEEGHFLLFEYKENSSFRVIIFNVSACETKYPL 130

[Close]
BLAST of CmoCh02G005760 vs. TAIR10
Match: AT1G49480.1 (AT1G49480.1 related to vernalization1 1)

HSP 1 Score: 76.3 bits (186), Expect = 4.8e-14
Identity = 46/120 (38.33%), Postives = 66/120 (55.00%), Query Frame = 1 

Query: 266 ENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYLSLPRSFAERYLQE-STDVKLEVA 325
           E +ER +  A +F+    NP F V +RPSY+  G  + LP  FAE+YL   S  +KL++ 
Sbjct: 110 EERERAVNAAKTFE--PTNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKLQLG 169

Query: 326 DGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKEGDVCVFELMNRIPKVFFKVTIFR 385
           + + W V C     +   R +   GW  F ++N + EGDVCVFEL+ R      +VT FR
Sbjct: 170 E-KQWPVRC----LYKAGRAKFSQGWYEFTLENNIGEGDVCVFELL-RTRDFVLEVTAFR 221

[Close]
BLAST of CmoCh02G005760 vs. NCBI nr
Match: gi|659116007|ref|XP_008457851.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 451.8 bits (1161), Expect = 1.2e-123
Identity = 247/389 (63.50%), Postives = 290/389 (74.55%), Query Frame = 1 

Query: 1   MAFFTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKK 60
           M  F SP PHFFKIILH  L ++KLDLPNKFV NN  SLL N+  L+LPDGA W  +L K
Sbjct: 1   MGSFISPNPHFFKIILHQNLTQQKLDLPNKFVKNNGDSLLFNHVALSLPDGAKWNFQLMK 60

Query: 61  SDGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRL 120
            DGK  F RGWPEFV+FY+++ GYF+VF+L+G  CFNVLIFD SATEIDYP+        
Sbjct: 61  LDGKFCFLRGWPEFVKFYSIQPGYFLVFQLKGICCFNVLIFDTSATEIDYPM-------- 120

Query: 121 RKDHTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHE---AAFCSLREMK 180
                    RRPP+L+PKSE+E DE++S+ +L++A  +KRKR +  E   +A+CSLR+MK
Sbjct: 121 ---------RRPPVLIPKSESE-DEEESIHILHEAALKKRKRMEKKEKETSAYCSLRKMK 180

Query: 181 KMMRTNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGS 240
           K M   + +KH+ FTTPQ FS     DEDEDEDEDE        D E +YS RQ  YRGS
Sbjct: 181 KNMEIKI-MKHREFTTPQVFS-----DEDEDEDEDE--------DLETNYSPRQTNYRGS 240

Query: 241 ARNHEDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQ 300
           A N  + GR SPESMRPM+P + P+ LTENQ  VLR ASSFK RTKNPSFMVTMRPSYIQ
Sbjct: 241 AYNESEDGRSSPESMRPMNPRKAPQVLTENQLVVLRRASSFKCRTKNPSFMVTMRPSYIQ 300

Query: 301 TGNYLSLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDN 360
           TGN LSLPR F+ERY++ES DVKLEV DGRIW VWCGVRWAFTRRRTELK GWKRFAVDN
Sbjct: 301 TGNCLSLPRIFSERYIKESMDVKLEVGDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDN 357

Query: 361 QLKEGDVCVFELMNRIPKVFFKVTIFRRP 387
           +L+EGD+CVFEL+N+ PKV F VTIFR P
Sbjct: 361 ELEEGDICVFELINKTPKVHFHVTIFRLP 357

[Close]
BLAST of CmoCh02G005760 vs. NCBI nr
Match: gi|449460664|ref|XP_004148065.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis sativus])

HSP 1 Score: 441.4 bits (1134), Expect = 1.6e-120
Identity = 238/390 (61.03%), Postives = 284/390 (72.82%), Query Frame = 1 

Query: 1   MAFFTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKK 60
           M  FTSP PHFFKI+LH  L ++KLDLPNKFV NN  SLL NNATL+LPDG+ W  +L +
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLDLPNKFVKNNAHSLLFNNATLSLPDGSKWNFQLTR 60

Query: 61  SDGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRL 120
            DGK+ F RGWPEFV FY V+ GYF+VF+L+G  CFNVLIFD SATEIDYP+        
Sbjct: 61  LDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPM-------- 120

Query: 121 RKDHTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHE---AAFCSLREMK 180
                    RR P+++PKSE+ DDE +S+ +L++ V +KR+R +  E   +A+ SLREMK
Sbjct: 121 ---------RRLPVIVPKSES-DDEGESIQILHEEVLKKRRRMEKKEKETSAYYSLREMK 180

Query: 181 KMMRTNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGS 240
           K M+  + +K + FTTPQ FSDD                 DE++D E DYS RQ  YR S
Sbjct: 181 KNMKIKI-MKRREFTTPQGFSDD-----------------DEDEDLETDYSPRQTNYRAS 240

Query: 241 ARNHEDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQ 300
             N  + GR SPESMRPM+P +T + LTENQ  V+R ASSFK RTKNPSFMVTMRPSYIQ
Sbjct: 241 EYNEREDGRSSPESMRPMNPRKTQQVLTENQLVVVRRASSFKCRTKNPSFMVTMRPSYIQ 300

Query: 301 TGNYLSLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDN 360
           TGN LSLPR F+ERY++ES DVKLEV DGRIW VWCGVRWAFTRRRTELK GWKRFAVDN
Sbjct: 301 TGNCLSLPRIFSERYIKESVDVKLEVGDGRIWKVWCGVRWAFTRRRTELKGGWKRFAVDN 354

Query: 361 QLKEGDVCVFELMNRIPKVFFKVTIFRRPA 388
           +L+EGD+CVFELMN+ PKV F VTIFR P+
Sbjct: 361 ELEEGDICVFELMNKTPKVHFLVTIFRLPS 354

[Close]
BLAST of CmoCh02G005760 vs. NCBI nr
Match: gi|778670075|ref|XP_011649360.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Cucumis sativus])

HSP 1 Score: 427.2 bits (1097), Expect = 3.1e-116
Identity = 238/416 (57.21%), Postives = 284/416 (68.27%), Query Frame = 1 

Query: 1   MAFFTSPIPHFFKIILHHTLIERKL--------------------------DLPNKFVIN 60
           M  FTSP PHFFKI+LH  L ++KL                          DLPNKFV N
Sbjct: 1   MGLFTSPNPHFFKIVLHQNLTQQKLVSTNQTNKFFKSHSLITLFFFLLLQQDLPNKFVKN 60

Query: 61  NRASLLHNNATLTLPDGANWEVELKKSDGKVSFARGWPEFVEFYNVKAGYFVVFRLEGNR 120
           N  SLL NNATL+LPDG+ W  +L + DGK+ F RGWPEFV FY V+ GYF+VF+L+G  
Sbjct: 61  NAHSLLFNNATLSLPDGSKWNFQLTRLDGKICFLRGWPEFVNFYAVQPGYFLVFQLKGIC 120

Query: 121 CFNVLIFDLSATEIDYPIKPRIFRRLRKDHTRAFDRRPPILLPKSENEDDEDDSVVVLND 180
           CFNVLIFD SATEIDYP+                 RR P+++PKSE+ DDE +S+ +L++
Sbjct: 121 CFNVLIFDTSATEIDYPM-----------------RRLPVIVPKSES-DDEGESIQILHE 180

Query: 181 AVSRKRKREKDHE---AAFCSLREMKKMMRTNMKIKHQRFTTPQRFSDDEEEDEDEDEDE 240
            V +KR+R +  E   +A+ SLREMKK M+  + +K + FTTPQ FSDD           
Sbjct: 181 EVLKKRRRMEKKEKETSAYYSLREMKKNMKIKI-MKRREFTTPQGFSDD----------- 240

Query: 241 DEEEEEDEEDDEEEDYSWRQRKYRGSARNHEDGGRFSPESMRPMHPPRTPKPLTENQERV 300
                 DE++D E DYS RQ  YR S  N  + GR SPESMRPM+P +T + LTENQ  V
Sbjct: 241 ------DEDEDLETDYSPRQTNYRASEYNEREDGRSSPESMRPMNPRKTQQVLTENQLVV 300

Query: 301 LRIASSFKLRTKNPSFMVTMRPSYIQTGNYLSLPRSFAERYLQESTDVKLEVADGRIWSV 360
           +R ASSFK RTKNPSFMVTMRPSYIQTGN LSLPR F+ERY++ES DVKLEV DGRIW V
Sbjct: 301 VRRASSFKCRTKNPSFMVTMRPSYIQTGNCLSLPRIFSERYIKESVDVKLEVGDGRIWKV 360

Query: 361 WCGVRWAFTRRRTELKCGWKRFAVDNQLKEGDVCVFELMNRIPKVFFKVTIFRRPA 388
           WCGVRWAFTRRRTELK GWKRFAVDN+L+EGD+CVFELMN+ PKV F VTIFR P+
Sbjct: 361 WCGVRWAFTRRRTELKGGWKRFAVDNELEEGDICVFELMNKTPKVHFLVTIFRLPS 380

[Close]
BLAST of CmoCh02G005760 vs. NCBI nr
Match: gi|659116198|ref|XP_008457957.1| (PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo])

HSP 1 Score: 414.8 bits (1065), Expect = 1.6e-112
Identity = 229/384 (59.64%), Postives = 272/384 (70.83%), Query Frame = 1 

Query: 4   FTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDG 63
           F+SP PHFFK+ILH TL ++KL+LPNKFV NN  S+L N  TL LPDGANW+++LKKSDG
Sbjct: 5   FSSPNPHFFKVILHQTLTQQKLELPNKFVKNNGGSMLFNKVTLFLPDGANWKIQLKKSDG 64

Query: 64  KVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKD 123
           K+ F RGWPEFV+FY+V+ GYF+VF+L+G  CFNVLIFD SATEIDYPI+  +       
Sbjct: 65  KIFFRRGWPEFVQFYSVQPGYFLVFQLKGICCFNVLIFDTSATEIDYPIRGLLD------ 124

Query: 124 HTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEA-AFCSLREMKKMMRT 183
                      ++PKS NED+E+ S+ +LN+ V +KR+ EK+ E  A+ SLR +KKMMR 
Sbjct: 125 -----------IIPKSRNEDEEE-SIQILNEMVLKKRRMEKEEETPAYRSLRGLKKMMRK 184

Query: 184 NMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNHE 243
           N K+K  +             +     DEDEE       D E D S RQ  +RG+A N  
Sbjct: 185 NAKVKIAK-------------NRGITSDEDEE-------DLETDNSRRQSNHRGTAYNEG 244

Query: 244 DGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNYL 303
           D GR SPESMRPM+P +TP  LTENQ  V + AS FK R  NPSFMVTMRPSYIQTGNYL
Sbjct: 245 DDGRVSPESMRPMNPRKTPPALTENQLAVKKRASRFKSRRNNPSFMVTMRPSYIQTGNYL 304

Query: 304 SLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKEG 363
           SLPR F ERY++ES DVKLEV DGR W VWCGVRWAFTRRRTELK GWKRFAVDN+LKEG
Sbjct: 305 SLPRRFGERYIKESVDVKLEVGDGRSWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKEG 350

Query: 364 DVCVFELMNRIPKVFFKVTIFRRP 387
           D+CVFELM +   V FKV IFR P
Sbjct: 365 DICVFELMEKNDAVLFKVAIFRLP 350

[Close]
BLAST of CmoCh02G005760 vs. NCBI nr
Match: gi|700206923|gb|KGN62042.1| (hypothetical protein Csa_2G292230 [Cucumis sativus])

HSP 1 Score: 408.7 bits (1049), Expect = 1.2e-110
Identity = 229/385 (59.48%), Postives = 268/385 (69.61%), Query Frame = 1 

Query: 4   FTSPIPHFFKIILHHTLIERKLDLPNKFVINNRASLLHNNATLTLPDGANWEVELKKSDG 63
           F SP PHFFK+ILH TL ++KLDLPNKFV NN  SLL N  TL LPDGANW+++LKK DG
Sbjct: 5   FRSPNPHFFKVILHQTLTQQKLDLPNKFVKNNGGSLLFNKVTLFLPDGANWKIQLKKLDG 64

Query: 64  KVSFARGWPEFVEFYNVKAGYFVVFRLEGNRCFNVLIFDLSATEIDYPIKPRIFRRLRKD 123
           K+ F RGWPEFV+FY+V+ G+F+VF+L+G  CFNVLIFD SATEIDYPI+          
Sbjct: 65  KICFRRGWPEFVQFYSVQPGHFLVFQLKGICCFNVLIFDTSATEIDYPIR---------- 124

Query: 124 HTRAFDRRPPILLPKSENEDDEDDSVVVLNDAVSRKRKREKDHEA--AFCSLREMKKMMR 183
             R  D     L+PKS NED+E+ S+ +LN+ V +KR+ EK+ E   A+ SLR +KKMMR
Sbjct: 125 --RLLD-----LIPKSRNEDEEE-SIQILNEMVLKKRRMEKEEETPPAYRSLRGLKKMMR 184

Query: 184 TNMKIKHQRFTTPQRFSDDEEEDEDEDEDEDEEEEEDEEDDEEEDYSWRQRKYRGSARNH 243
            N K+K          + +     DEDE            D E D S RQ  +RG   N 
Sbjct: 185 KNAKVK---------IAKNRGITSDEDEG-----------DLEMDNSRRQSNHRGIVYNE 244

Query: 244 EDGGRFSPESMRPMHPPRTPKPLTENQERVLRIASSFKLRTKNPSFMVTMRPSYIQTGNY 303
            D GR SPESMRPM+P +TP  LTENQ  V + AS FK R  NPSFMVTMRPSYIQTGNY
Sbjct: 245 GDDGRVSPESMRPMNPRKTPPALTENQLAVKKRASWFKSRRNNPSFMVTMRPSYIQTGNY 304

Query: 304 LSLPRSFAERYLQESTDVKLEVADGRIWSVWCGVRWAFTRRRTELKCGWKRFAVDNQLKE 363
           LSLPR F E+Y++ES DVKLEV DGR W VWCGVRWAFTRRRTELK GWKRFAVDN+LKE
Sbjct: 305 LSLPRRFGEKYIKESVDVKLEVGDGRCWRVWCGVRWAFTRRRTELKGGWKRFAVDNELKE 351

Query: 364 GDVCVFELMNRIPKVFFKVTIFRRP 387
           GD+CVFELM +   V FKV IFR P
Sbjct: 365 GDICVFELMKKNGSVLFKVAIFRLP 351

The following BLAST results are available for this feature:
BLAST of CmoCh02G005760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
VRN1_ARATH1.3e-2130.34B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 P... [more]
Y1475_ARATH3.1e-1533.13B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2... [more]
Y3896_ARATH2.2e-1334.58B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2... [more]
Y4158_ARATH2.2e-1334.58B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2... [more]
REM19_ARATH8.5e-1338.33B3 domain-containing protein REM19 OS=Arabidopsis thaliana GN=REM19 PE=1 SV=1[more]
BLAST of CmoCh02G005760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM04_CUCSA1.1e-12061.03Uncharacterized protein OS=Cucumis sativus GN=Csa_2G287160 PE=4 SV=1[more]
A0A0A0LMR6_CUCSA8.0e-11159.48Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292230 PE=4 SV=1[more]
A0A0D2SWH2_GOSRA1.4e-3532.99Uncharacterized protein OS=Gossypium raimondii GN=B456_008G071300 PE=4 SV=1[more]
A0A0D2RB72_GOSRA1.9e-3533.16Uncharacterized protein OS=Gossypium raimondii GN=B456_008G071300 PE=4 SV=1[more]
A0A0B0MM46_GOSAR7.0e-3033.08B3 domain-containing transcription factor VRN1-like protein OS=Gossypium arboreu... [more]
BLAST of CmoCh02G005760 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G18990.17.4e-2330.34 AP2/B3-like transcriptional factor family protein[more]
AT1G49475.11.8e-1633.13 AP2/B3-like transcriptional factor family protein[more]
AT4G01580.11.3e-1434.58 AP2/B3-like transcriptional factor family protein[more]
AT3G18960.11.3e-1434.58 AP2/B3-like transcriptional factor family protein[more]
AT1G49480.14.8e-1438.33 related to vernalization1 1[more]
BLAST of CmoCh02G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659116007|ref|XP_008457851.1|1.2e-12363.50PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo][more]
gi|449460664|ref|XP_004148065.1|1.6e-12061.03PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2 [Cucum... [more]
gi|778670075|ref|XP_011649360.1|3.1e-11657.21PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X1 [Cucum... [more]
gi|659116198|ref|XP_008457957.1|1.6e-11259.64PREDICTED: B3 domain-containing transcription factor VRN1-like [Cucumis melo][more]
gi|700206923|gb|KGN62042.1|1.2e-11059.48hypothetical protein Csa_2G292230 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003340B3_DNA-bd
IPR015300DNA-bd_pseudobarrel_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0003824 catalytic activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G005760.1CmoCh02G005760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003340B3 DNA binding domainPFAMPF02362B3coord: 11..102
score: 1.6E-13coord: 287..385
score: 1.6
IPR003340B3 DNA binding domainSMARTSM01019B3_2coord: 11..104
score: 1.5E-16coord: 287..386
score: 7.2
IPR003340B3 DNA binding domainPROFILEPS50863B3coord: 10..104
score: 12.252coord: 287..386
score: 14
IPR015300DNA-binding pseudobarrel domainGENE3DG3DSA:2.40.330.10coord: 281..385
score: 8.1E-24coord: 5..104
score: 1.8
IPR015300DNA-binding pseudobarrel domainunknownSSF101936DNA-binding pseudobarrel domaincoord: 4..104
score: 1.31E-21coord: 282..385
score: 4.51
NoneNo IPR availablePANTHERPTHR31674FAMILY NOT NAMEDcoord: 281..382
score: 8.9E-52coord: 6..167
score: 8.9
NoneNo IPR availablePANTHERPTHR31674:SF1SUBFAMILY NOT NAMEDcoord: 281..382
score: 8.9E-52coord: 6..167
score: 8.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G005760Cucsa.366500Cucumber (Gy14) v1cgycmoB1020
CmoCh02G005760CmaCh20G011380Cucurbita maxima (Rimu)cmacmoB565
CmoCh02G005760CmaCh02G005670Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G005760Cla020159Watermelon (97103) v1cmowmB581
CmoCh02G005760Csa2G292230Cucumber (Chinese Long) v2cmocuB571
CmoCh02G005760MELO3C020914Melon (DHL92) v3.5.1cmomeB547
CmoCh02G005760MELO3C020923Melon (DHL92) v3.5.1cmomeB544
CmoCh02G005760ClCG02G013090Watermelon (Charleston Gray)cmowcgB532
CmoCh02G005760CSPI02G14630Wild cucumber (PI 183967)cmocpiB576
CmoCh02G005760Lsi10G005970Bottle gourd (USVL1VR-Ls)cmolsiB530
CmoCh02G005760Cp4.1LG16g00420Cucurbita pepo (Zucchini)cmocpeB573
CmoCh02G005760Cp4.1LG05g11150Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G005760MELO3C034657.2Melon (DHL92) v3.6.1cmomedB622
CmoCh02G005760CsaV3_2G017180Cucumber (Chinese Long) v3cmocucB0682
CmoCh02G005760CsaV3_2G017110Cucumber (Chinese Long) v3cmocucB0685
CmoCh02G005760Cla97C02G038770Watermelon (97103) v2cmowmbB594
CmoCh02G005760Bhi10G001813Wax gourdcmowgoB0741
CmoCh02G005760CsGy2G014630Cucumber (Gy14) v2cgybcmoB217
CmoCh02G005760Carg11641Silver-seed gourdcarcmoB1422
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G005760CmoCh20G011710Cucurbita moschata (Rifu)cmocmoB415
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G005760Cucumber (Gy14) v2cgybcmoB225
CmoCh02G005760Melon (DHL92) v3.6.1cmomedB611
CmoCh02G005760Melon (DHL92) v3.6.1cmomedB625
CmoCh02G005760Cucumber (Chinese Long) v3cmocucB0692
CmoCh02G005760Watermelon (97103) v2cmowmbB610
CmoCh02G005760Wax gourdcmowgoB0753
CmoCh02G005760Cucumber (Gy14) v1cgycmoB1018
CmoCh02G005760Wild cucumber (PI 183967)cmocpiB586
CmoCh02G005760Cucumber (Chinese Long) v2cmocuB581
CmoCh02G005760Melon (DHL92) v3.5.1cmomeB535
CmoCh02G005760Watermelon (Charleston Gray)cmowcgB547
CmoCh02G005760Watermelon (97103) v1cmowmB596
CmoCh02G005760Cucurbita pepo (Zucchini)cmocpeB548
CmoCh02G005760Bottle gourd (USVL1VR-Ls)cmolsiB538