CmoCh01G018970 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018970
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cold regulated gene 27, putative isoform 1
Location	Cmo_Chr01 : 13658477 .. 13660305 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTGTGAAGGTTCTTTTGTCCCCAAACACGGCCTTTCGCTCTCTTCCTAAAGATCTCTCTCCACTGGCCCGCTTCCATTTTTCTTCTCCATCTCTCTCTCTCGCCATTGCAAATCTGGAGATAATCCTTCATCTTCTTCTGTTTTCATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGTACTTACCCTACTTTTCTTCTTCACGGTTCCAATTATCTTCGTTTTTGGATGTTTTTGTATTTCGGATTAGGTTTTGCTTATGTGATGTTTCGTATCTTCAATTTCATACTCTGTGCCCGTACTGTTTCTCTATTTTCGTGCTAAAATGAGAACGATATCGATTAAATAATTGAAAGAGAGAGGAAGTGGAAGAAGATAGTACTGGTCTGGCATTGACTCTCGAGACTGGAGAATTTTTATTTTGTATTTTGTTCGGCTCTGTTTAGATCGGTATTGCTGTTTGTCGATGGAATTTATTGGGCTGTGCAAGAGGTTTGGATCTGTGATCAATTATTCTGGAAACTCAGCACGAGCTTTGGTTGTCCGGATTTATTATTTATCATTATAATGACTAATAGTAGCGTTTTTCTGTTATTTATTAAGAGAGACCATGAACTTGCCGCGGGAATTGCTGATAATGCGGTTTCGATTTTAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGGTTCAGTGCCGATTGTTTTTTCTTGATGAGTTTTAACTCGTTTCTGATCATGACTTGTGAATGCTCTTTTTGTTATTTTGTTGCTTTCATCTACACAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGGTAGGTCTCTGGGCCTTTGTGCAGATAAATTATCAATATTGAATTGATAAAGTGTGCCTCTCCTTGATTATAATTTAGTTATCACGTTTAAGTTTGCTAGTTAGTAATAATAAATTGGAATATGTTTGATCTGAATCTAGTCTTTACTGCCAGAAAGTTCTGAGTTCAAACAAATGATGCGACTGGAGTGAAATTGTTTTATCTATTGTAATCTGCTATGTTCAAGATCCGACTACGATTTTAACTGCAATTTGTACTGCAATCATCATGTCGCCTGAATTTTAGATGAGTAAGATCCTTTATGTTGCAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTAATTCAAATGATATCAACTTAGCTATCATGTCCTTGCTCCAAAATGACAACCACTGTTTTCTTTTAGGTTGTTCCTTAA

mRNA sequence

ACAACTGTGAAGGTTCTTTTGTCCCCAAACACGGCCTTTCGCTCTCTTCCTAAAGATCTCTCTCCACTGGCCCGCTTCCATTTTTCTTCTCCATCTCTCTCTCTCGCCATTGCAAATCTGGAGATAATCCTTCATCTTCTTCTGTTTTCATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA

Coding sequence (CDS)

ATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA

Homology

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BLAST of CmoCh01G018970 vs. TrEMBL
Match: A0A0A0L0A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639810 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 172/243 (70.78%), Postives = 192/243 (79.01%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 77  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 136

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 137 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 196

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 197 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 256

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 257 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 316

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BLAST of CmoCh01G018970 vs. TrEMBL
Match: A0A061FC20_THECC (Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 88/236 (37.29%), Postives = 125/236 (52.97%), Query Frame = 1


Query: 8   LENLKPKETRTDS--LISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+RT S    SEL  + S E   Q++S S  + +TES  ++WTDEKH L+L+S
Sbjct: 1   MEGFRRIESRTTSEASASELTRERSPEFAHQEQSPSLDSLVTESTSTEWTDEKHSLYLKS 60

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS +  G  S KE  S +K     Q   ++ +  GQFKVLR GSWK +NF
Sbjct: 61  MEASFVNQLYDSMNFLGWNSQKEKLSGSK--SSRQRHCNICTSSGQFKVLRGGSWKKINF 120

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N  +       +PW+ HFR+   ++  A +S   S+                 
Sbjct: 121 ERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSA----------------- 180

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                    ++KEVSDQNF D E       K  +DC++K++KT   ND  NDQVVP
Sbjct: 181 ---------SSKEVSDQNFEDEELG----EKACSDCSSKKLKTL-VNDSCNDQVVP 203

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BLAST of CmoCh01G018970 vs. TrEMBL
Match: E0CPV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10480 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-24
Identity = 89/249 (35.74%), Postives = 132/249 (53.01%), Query Frame = 1


Query: 8   LENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESME 67
           +E+ + ++T      S L   +STE+  Q+E+SS  + +TE +  +WTDEKH L+L+SME
Sbjct: 1   MESFRTRQT------SGLTGGDSTESVDQEETSSLDSPVTEPMSMEWTDEKHSLYLKSME 60

Query: 68  ASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEP 127
           ASFV Q+++S    G  S KEN S +K     Q      +  GQFKVLR G W+ +NFE 
Sbjct: 61  ASFVDQLYNSLGLLGWHSQKENPSDSK--PSLQMLCKTRNSSGQFKVLRGGFWQKINFER 120

Query: 128 TEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSP---------AISSRKRNLLPFGA 187
              +    +    L  NPWI HFR+A +++ V   +P         A+ SR +   P G 
Sbjct: 121 ARKQMVKADGSHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRKAVPSRGKKASPCGL 180

Query: 188 G------PMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETN 242
                  PM  C+    +  +  N EVSDQNF+D + E     + ++  + KR+KT   +
Sbjct: 181 ATTSKQFPMYHCHL-RQRDSLSTNTEVSDQNFLDDDVE---GGRENSLVSAKRMKTIVVD 237

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BLAST of CmoCh01G018970 vs. TrEMBL
Match: A0A061FAS9_THECC (Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 87/236 (36.86%), Postives = 123/236 (52.12%), Query Frame = 1


Query: 8   LENLKPKETRTDS--LISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+RT S    SEL  + S E   Q++S S  + +TES  ++WTDEKH L+L+S
Sbjct: 1   MEGFRRIESRTTSEASASELTRERSPEFAHQEQSPSLDSLVTESTSTEWTDEKHSLYLKS 60

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS +  G  S KE  S +K     Q   ++ +  GQFKVLR GSWK +NF
Sbjct: 61  MEASFVNQLYDSMNFLGWNSQKEKLSGSK--SSRQRHCNICTSSGQFKVLRGGSWKKINF 120

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N  +       +PW+ HFR+   ++  A +S   S+  +              
Sbjct: 121 ERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSK-------------- 180

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                       EVSDQNF D E       K  +DC++K++KT   ND  NDQVVP
Sbjct: 181 -----------AEVSDQNFEDEELG----EKACSDCSSKKLKTL-VNDSCNDQVVP 204

[Close]

BLAST of CmoCh01G018970 vs. TrEMBL
Match: A0A0D2R0L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 88/236 (37.29%), Postives = 125/236 (52.97%), Query Frame = 1


Query: 8   LENLKPKETRTDSLIS--ELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+R  S  S  EL +  S E    +++ +  + MTES  ++WTDEKH L+L+S
Sbjct: 64  MEGFRGIESRKSSEASAPELTLQSSPELAHHEQNPTLDSMMTESTSTEWTDEKHSLYLKS 123

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS    G  S KE S  +K   +++  S      GQFKVLR GSWK +NF
Sbjct: 124 MEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISS-----GQFKVLRGGSWKKINF 183

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N      +   +PWI HFR+  K++ +A  S   ++                 
Sbjct: 184 ERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNA----------------- 243

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                    ++KEVSDQNFVD E + EK  KG   C+ K++KT  T+   NDQVVP
Sbjct: 244 ---------SSKEVSDQNFVD-EEQGEKARKGC--CSPKKLKTRVTDASCNDQVVP 264

[Close]

BLAST of CmoCh01G018970 vs. TAIR10
Match: AT5G42900.1 (AT5G42900.1 cold regulated gene 27)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 68/216 (31.48%), Postives = 102/216 (47.22%), Query Frame = 1


Query: 37  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLH 96
           + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   
Sbjct: 31  ETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLYNSL---GALGKNENVSESTRF 90

Query: 97  GQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL---NDYQALSRNPWIHHFRAA 156
           G  +  S       QFKVL  G W+ +N +  E R N     N ++ L R+PWI H++  
Sbjct: 91  GSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPL 150

Query: 157 RKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFV 216
            K +      P     + S+ K+ +   G A  ++  +S    H        EVSDQNFV
Sbjct: 151 VKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFV 210

Query: 217 DGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
           +      +  KG N  + K      +     DQVVP
Sbjct: 211 N------EGIKGENGSSKKMKTVMMSESSSTDQVVP 231

[Close]

BLAST of CmoCh01G018970 vs. TAIR10
Match: AT4G33980.2 (AT4G33980.2 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 51.6 bits (122), Expect = 7.8e-07
Identity = 59/231 (25.54%), Postives = 94/231 (40.69%), Query Frame = 1


Query: 19  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASF 78
           D  +SE + +  +E+ L +   S  T  T    +D        WT+EKH+ +L+ +E+SF
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSRSDADSKLDECTAWTNEKHNSYLDYLESSF 74

Query: 79  VSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEA 138
           V Q++ S   GGT          +L       S+ H    QF VL+ G W+ VNF   ++
Sbjct: 75  VRQLY-SLLGGGT---------QRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQS 134

Query: 139 RPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQ 198
                +++               R ++N     P  S+    +             D+  
Sbjct: 135 CLETSSEF---------------RFHRNSLRNKPENSNGNYTM-------GTTVQGDVLC 194

Query: 199 HCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
           H    + E S QNF + E E E   KG      +R   ++ + L  DQVVP
Sbjct: 195 HDETKHSEASGQNFREEEEEEE---KGEVSKKREREANNDDSSLKEDQVVP 210

[Close]

BLAST of CmoCh01G018970 vs. NCBI nr
Match: gi|778696122|ref|XP_011654107.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X3 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 3.6e-86
Identity = 175/245 (71.43%), Postives = 194/245 (79.18%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 240

Query: 241 DQVVP 242
           DQVVP
Sbjct: 241 DQVVP 242

[Close]

BLAST of CmoCh01G018970 vs. NCBI nr
Match: gi|700200035|gb|KGN55193.1| (hypothetical protein Csa_4G639810 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 2.0e-84
Identity = 172/243 (70.78%), Postives = 192/243 (79.01%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 77  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 136

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 137 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 196

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 197 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 256

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 257 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 316

[Close]

BLAST of CmoCh01G018970 vs. NCBI nr
Match: gi|449446999|ref|XP_004141257.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X1 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.6e-84
Identity = 172/242 (71.07%), Postives = 191/242 (78.93%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 239
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 239

[Close]

BLAST of CmoCh01G018970 vs. NCBI nr
Match: gi|449447001|ref|XP_004141258.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X2 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.6e-84
Identity = 172/242 (71.07%), Postives = 191/242 (78.93%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 239
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 239

[Close]

BLAST of CmoCh01G018970 vs. NCBI nr
Match: gi|659103270|ref|XP_008452552.1| (PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 1.0e-77
Identity = 160/226 (70.80%), Postives = 179/226 (79.20%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LP NL+NL  +E R+DSL+SE   D STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPRNLDNLNSREARSDSLVSEFVKDGSTEFCRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASHVHSH GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHF+AARKNKNVACKS AI SR RN L   A  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQAIGSRGRNSLSLEAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCN 223
             GP+RA NSDLSQ  I +NKEVSDQNFVD   EV +V KGS DCN
Sbjct: 181 NSGPIRASNSDLSQQYISSNKEVSDQNFVD---EVVEVEKGSRDCN 223

The following BLAST results are available for this feature:

BLAST of CmoCh01G018970 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G018970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A2_CUCSA	1.4e-84	70.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639810 PE=4 SV=1	[more]
A0A061FC20_THECC	6.0e-24	37.29	Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4...	[more]
E0CPV3_VITVI	7.9e-24	35.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10480 PE=4 SV=...	[more]
A0A061FAS9_THECC	3.0e-23	36.86	Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4...	[more]
A0A0D2R0L4_GOSRA	8.7e-23	37.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1	[more]

BLAST of CmoCh01G018970 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42900.1	1.5e-13	31.48	cold regulated gene 27	[more]
AT4G33980.2	7.8e-07	25.54	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh01G018970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696122\|ref\|XP_011654107.1\|	3.6e-86	71.43	PREDICTED: uncharacterized protein LOC101214397 isoform X3 [Cucumis sativus]	[more]
gi\|700200035\|gb\|KGN55193.1\|	2.0e-84	70.78	hypothetical protein Csa_4G639810 [Cucumis sativus]	[more]
gi\|449446999\|ref\|XP_004141257.1\|	2.6e-84	71.07	PREDICTED: uncharacterized protein LOC101214397 isoform X1 [Cucumis sativus]	[more]
gi\|449447001\|ref\|XP_004141258.1\|	2.6e-84	71.07	PREDICTED: uncharacterized protein LOC101214397 isoform X2 [Cucumis sativus]	[more]
gi\|659103270\|ref\|XP_008452552.1\|	1.0e-77	70.80	PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G018970.1	CmoCh01G018970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33676	FAMILY NOT NAMED	coord: 21..241 score: 4.0
None	No IPR available	PANTHER	PTHR33676:SF3	COLD REGULATED PROTEIN 27	coord: 21..241 score: 4.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G018970	Cucsa.352200	Cucumber (Gy14) v1	cgycmoB0967
CmoCh01G018970	CmaCh01G018380	Cucurbita maxima (Rimu)	cmacmoB469
CmoCh01G018970	Cla020671	Watermelon (97103) v1	cmowmB434
CmoCh01G018970	Csa4G639810	Cucumber (Chinese Long) v2	cmocuB461
CmoCh01G018970	MELO3C016754	Melon (DHL92) v3.5.1	cmomeB422
CmoCh01G018970	ClCG05G019900	Watermelon (Charleston Gray)	cmowcgB412
CmoCh01G018970	CSPI04G24090	Wild cucumber (PI 183967)	cmocpiB465
CmoCh01G018970	Lsi04G015620	Bottle gourd (USVL1VR-Ls)	cmolsiB412
CmoCh01G018970	Cp4.1LG06g01600	Cucurbita pepo (Zucchini)	cmocpeB465
CmoCh01G018970	Cp4.1LG02g07010	Cucurbita pepo (Zucchini)	cmocpeB450
CmoCh01G018970	MELO3C018454.2	Melon (DHL92) v3.6.1	cmomedB452
CmoCh01G018970	MELO3C016754.2	Melon (DHL92) v3.6.1	cmomedB486
CmoCh01G018970	CsaV3_4G034340	Cucumber (Chinese Long) v3	cmocucB0551
CmoCh01G018970	Cla97C05G101540	Watermelon (97103) v2	cmowmbB461
CmoCh01G018970	Bhi09G002730	Wax gourd	cmowgoB0598
CmoCh01G018970	CsGy4G022370	Cucumber (Gy14) v2	cgybcmoB485
CmoCh01G018970	Carg27330	Silver-seed gourd	carcmoB1129
CmoCh01G018970	Carg10605	Silver-seed gourd	carcmoB1044

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G018970	CmoCh09G002210	Cucurbita moschata (Rifu)	cmocmoB017

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G018970	Cucurbita pepo (Zucchini)	cmocpeB420
CmoCh01G018970	Bottle gourd (USVL1VR-Ls)	cmolsiB390
CmoCh01G018970	Bottle gourd (USVL1VR-Ls)	cmolsiB442
CmoCh01G018970	Cucumber (Gy14) v2	cgybcmoB193
CmoCh01G018970	Melon (DHL92) v3.6.1	cmomedB461
CmoCh01G018970	Silver-seed gourd	carcmoB0259
CmoCh01G018970	Cucumber (Chinese Long) v3	cmocucB0510
CmoCh01G018970	Watermelon (97103) v2	cmowmbB486
CmoCh01G018970	Wax gourd	cmowgoB0570
CmoCh01G018970	Cucurbita moschata (Rifu)	cmocmoB105
CmoCh01G018970	Cucurbita moschata (Rifu)	cmocmoB141
CmoCh01G018970	Cucurbita moschata (Rifu)	cmocmoB352
CmoCh01G018970	Cucurbita moschata (Rifu)	cmocmoB369
CmoCh01G018970	Cucurbita moschata (Rifu)	cmocmoB376
CmoCh01G018970	Cucumber (Gy14) v1	cgycmoB0220
CmoCh01G018970	Cucumber (Gy14) v1	cgycmoB0626
CmoCh01G018970	Cucumber (Gy14) v1	cgycmoB1090
CmoCh01G018970	Cucurbita maxima (Rimu)	cmacmoB047
CmoCh01G018970	Cucurbita maxima (Rimu)	cmacmoB184
CmoCh01G018970	Cucurbita maxima (Rimu)	cmacmoB646
CmoCh01G018970	Cucurbita maxima (Rimu)	cmacmoB779
CmoCh01G018970	Cucurbita maxima (Rimu)	cmacmoB851
CmoCh01G018970	Wild cucumber (PI 183967)	cmocpiB428
CmoCh01G018970	Wild cucumber (PI 183967)	cmocpiB482
CmoCh01G018970	Wild cucumber (PI 183967)	cmocpiB491
CmoCh01G018970	Cucumber (Chinese Long) v2	cmocuB424
CmoCh01G018970	Cucumber (Chinese Long) v2	cmocuB475
CmoCh01G018970	Melon (DHL92) v3.5.1	cmomeB398
CmoCh01G018970	Melon (DHL92) v3.5.1	cmomeB403
CmoCh01G018970	Melon (DHL92) v3.5.1	cmomeB442
CmoCh01G018970	Watermelon (Charleston Gray)	cmowcgB395
CmoCh01G018970	Watermelon (Charleston Gray)	cmowcgB435
CmoCh01G018970	Watermelon (97103) v1	cmowmB416
CmoCh01G018970	Watermelon (97103) v1	cmowmB445