CmoCh01G018970.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G018970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Cold regulated gene 27, putative isoform 1
Location	Cmo_Chr01 : 13658477 .. 13660305 (+)
Sequence length	875

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTGTGAAGGTTCTTTTGTCCCCAAACACGGCCTTTCGCTCTCTTCCTAAAGATCTCTCTCCACTGGCCCGCTTCCATTTTTCTTCTCCATCTCTCTCTCTCGCCATTGCAAATCTGGAGATAATCCTTCATCTTCTTCTGTTTTCATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGTACTTACCCTACTTTTCTTCTTCACGGTTCCAATTATCTTCGTTTTTGGATGTTTTTGTATTTCGGATTAGGTTTTGCTTATGTGATGTTTCGTATCTTCAATTTCATACTCTGTGCCCGTACTGTTTCTCTATTTTCGTGCTAAAATGAGAACGATATCGATTAAATAATTGAAAGAGAGAGGAAGTGGAAGAAGATAGTACTGGTCTGGCATTGACTCTCGAGACTGGAGAATTTTTATTTTGTATTTTGTTCGGCTCTGTTTAGATCGGTATTGCTGTTTGTCGATGGAATTTATTGGGCTGTGCAAGAGGTTTGGATCTGTGATCAATTATTCTGGAAACTCAGCACGAGCTTTGGTTGTCCGGATTTATTATTTATCATTATAATGACTAATAGTAGCGTTTTTCTGTTATTTATTAAGAGAGACCATGAACTTGCCGCGGGAATTGCTGATAATGCGGTTTCGATTTTAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGGTTCAGTGCCGATTGTTTTTTCTTGATGAGTTTTAACTCGTTTCTGATCATGACTTGTGAATGCTCTTTTTGTTATTTTGTTGCTTTCATCTACACAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGGTAGGTCTCTGGGCCTTTGTGCAGATAAATTATCAATATTGAATTGATAAAGTGTGCCTCTCCTTGATTATAATTTAGTTATCACGTTTAAGTTTGCTAGTTAGTAATAATAAATTGGAATATGTTTGATCTGAATCTAGTCTTTACTGCCAGAAAGTTCTGAGTTCAAACAAATGATGCGACTGGAGTGAAATTGTTTTATCTATTGTAATCTGCTATGTTCAAGATCCGACTACGATTTTAACTGCAATTTGTACTGCAATCATCATGTCGCCTGAATTTTAGATGAGTAAGATCCTTTATGTTGCAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTAATTCAAATGATATCAACTTAGCTATCATGTCCTTGCTCCAAAATGACAACCACTGTTTTCTTTTAGGTTGTTCCTTAA

mRNA sequence

ACAACTGTGAAGGTTCTTTTGTCCCCAAACACGGCCTTTCGCTCTCTTCCTAAAGATCTCTCTCCACTGGCCCGCTTCCATTTTTCTTCTCCATCTCTCTCTCTCGCCATTGCAAATCTGGAGATAATCCTTCATCTTCTTCTGTTTTCATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA

Coding sequence (CDS)

ATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA

Homology

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BLAST of CmoCh01G018970.1 vs. TrEMBL
Match: A0A0A0L0A2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639810 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.4e-84
Identity = 172/243 (70.78%), Postives = 192/243 (79.01%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 77  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 136

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 137 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 196

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 197 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 256

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 257 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 316

[Close]

BLAST of CmoCh01G018970.1 vs. TrEMBL
Match: A0A061FC20_THECC (Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.0e-24
Identity = 88/236 (37.29%), Postives = 125/236 (52.97%), Query Frame = 1


Query: 8   LENLKPKETRTDS--LISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+RT S    SEL  + S E   Q++S S  + +TES  ++WTDEKH L+L+S
Sbjct: 1   MEGFRRIESRTTSEASASELTRERSPEFAHQEQSPSLDSLVTESTSTEWTDEKHSLYLKS 60

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS +  G  S KE  S +K     Q   ++ +  GQFKVLR GSWK +NF
Sbjct: 61  MEASFVNQLYDSMNFLGWNSQKEKLSGSK--SSRQRHCNICTSSGQFKVLRGGSWKKINF 120

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N  +       +PW+ HFR+   ++  A +S   S+                 
Sbjct: 121 ERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSA----------------- 180

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                    ++KEVSDQNF D E       K  +DC++K++KT   ND  NDQVVP
Sbjct: 181 ---------SSKEVSDQNFEDEELG----EKACSDCSSKKLKTL-VNDSCNDQVVP 203

[Close]

BLAST of CmoCh01G018970.1 vs. TrEMBL
Match: E0CPV3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10480 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.9e-24
Identity = 89/249 (35.74%), Postives = 132/249 (53.01%), Query Frame = 1


Query: 8   LENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESME 67
           +E+ + ++T      S L   +STE+  Q+E+SS  + +TE +  +WTDEKH L+L+SME
Sbjct: 1   MESFRTRQT------SGLTGGDSTESVDQEETSSLDSPVTEPMSMEWTDEKHSLYLKSME 60

Query: 68  ASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEP 127
           ASFV Q+++S    G  S KEN S +K     Q      +  GQFKVLR G W+ +NFE 
Sbjct: 61  ASFVDQLYNSLGLLGWHSQKENPSDSK--PSLQMLCKTRNSSGQFKVLRGGFWQKINFER 120

Query: 128 TEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSP---------AISSRKRNLLPFGA 187
              +    +    L  NPWI HFR+A +++ V   +P         A+ SR +   P G 
Sbjct: 121 ARKQMVKADGSHVLLANPWIQHFRSACRDETVVLPAPQENGSSTRKAVPSRGKKASPCGL 180

Query: 188 G------PMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETN 242
                  PM  C+    +  +  N EVSDQNF+D + E     + ++  + KR+KT   +
Sbjct: 181 ATTSKQFPMYHCHL-RQRDSLSTNTEVSDQNFLDDDVE---GGRENSLVSAKRMKTIVVD 237

[Close]

BLAST of CmoCh01G018970.1 vs. TrEMBL
Match: A0A061FAS9_THECC (Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-23
Identity = 87/236 (36.86%), Postives = 123/236 (52.12%), Query Frame = 1


Query: 8   LENLKPKETRTDS--LISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+RT S    SEL  + S E   Q++S S  + +TES  ++WTDEKH L+L+S
Sbjct: 1   MEGFRRIESRTTSEASASELTRERSPEFAHQEQSPSLDSLVTESTSTEWTDEKHSLYLKS 60

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS +  G  S KE  S +K     Q   ++ +  GQFKVLR GSWK +NF
Sbjct: 61  MEASFVNQLYDSMNFLGWNSQKEKLSGSK--SSRQRHCNICTSSGQFKVLRGGSWKKINF 120

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N  +       +PW+ HFR+   ++  A +S   S+  +              
Sbjct: 121 ERPGFQLNKTDGSHCFVASPWVQHFRSGSMSRVPASRSVQGSASSK-------------- 180

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                       EVSDQNF D E       K  +DC++K++KT   ND  NDQVVP
Sbjct: 181 -----------AEVSDQNFEDEELG----EKACSDCSSKKLKTL-VNDSCNDQVVP 204

[Close]

BLAST of CmoCh01G018970.1 vs. TrEMBL
Match: A0A0D2R0L4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 88/236 (37.29%), Postives = 125/236 (52.97%), Query Frame = 1


Query: 8   LENLKPKETRTDSLIS--ELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLES 67
           +E  +  E+R  S  S  EL +  S E    +++ +  + MTES  ++WTDEKH L+L+S
Sbjct: 64  MEGFRGIESRKSSEASAPELTLQSSPELAHHEQNPTLDSMMTESTSTEWTDEKHSLYLKS 123

Query: 68  MEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNF 127
           MEASFV+Q++DS    G  S KE S  +K   +++  S      GQFKVLR GSWK +NF
Sbjct: 124 MEASFVNQLYDSMSFLGCNS-KEKSPGSKSSRKARCISS-----GQFKVLRGGSWKKINF 183

Query: 128 EPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACN 187
           E    + N      +   +PWI HFR+  K++ +A  S   ++                 
Sbjct: 184 ERPVVQLNKRYCSHSFVASPWIQHFRSGSKSRVLASCSLQDNA----------------- 243

Query: 188 SDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
                    ++KEVSDQNFVD E + EK  KG   C+ K++KT  T+   NDQVVP
Sbjct: 244 ---------SSKEVSDQNFVD-EEQGEKARKGC--CSPKKLKTRVTDASCNDQVVP 264

[Close]

BLAST of CmoCh01G018970.1 vs. TAIR10
Match: AT5G42900.1 (AT5G42900.1 cold regulated gene 27)

HSP 1 Score: 73.9 bits (180), Expect = 1.5e-13
Identity = 68/216 (31.48%), Postives = 102/216 (47.22%), Query Frame = 1


Query: 37  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLH 96
           + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   
Sbjct: 31  ETTSSMYSAGKEYMETEWTNEKHSLYLKSMEASFVDQLYNSL---GALGKNENVSESTRF 90

Query: 97  GQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL---NDYQALSRNPWIHHFRAA 156
           G  +  S       QFKVL  G W+ +N +  E R N     N ++ L R+PWI H++  
Sbjct: 91  GSGRKPSQ-----EQFKVLHDGFWQKINVKQPEHRINGRHGGNSHEFL-RSPWIKHYKPL 150

Query: 157 RKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFV 216
            K +      P     + S+ K+ +   G A  ++  +S    H        EVSDQNFV
Sbjct: 151 VKTQIPVTDEPENQVVSSSNGKKGICSSGSASSLKQLSSHSRDHDQISVGEAEVSDQNFV 210

Query: 217 DGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
           +      +  KG N  + K      +     DQVVP
Sbjct: 211 N------EGIKGENGSSKKMKTVMMSESSSTDQVVP 231

[Close]

BLAST of CmoCh01G018970.1 vs. TAIR10
Match: AT4G33980.2 (AT4G33980.2 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 51.6 bits (122), Expect = 7.8e-07
Identity = 59/231 (25.54%), Postives = 94/231 (40.69%), Query Frame = 1


Query: 19  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASF 78
           D  +SE + +  +E+ L +   S  T  T    +D        WT+EKH+ +L+ +E+SF
Sbjct: 15  DRDVSEASAESQSESTLSNSLDSGVTAETSRSDADSKLDECTAWTNEKHNSYLDYLESSF 74

Query: 79  VSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEA 138
           V Q++ S   GGT          +L       S+ H    QF VL+ G W+ VNF   ++
Sbjct: 75  VRQLY-SLLGGGT---------QRLSRTRDVQSNSHKSADQFTVLQNGCWQKVNFGKKQS 134

Query: 139 RPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQ 198
                +++               R ++N     P  S+    +             D+  
Sbjct: 135 CLETSSEF---------------RFHRNSLRNKPENSNGNYTM-------GTTVQGDVLC 194

Query: 199 HCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP 242
           H    + E S QNF + E E E   KG      +R   ++ + L  DQVVP
Sbjct: 195 HDETKHSEASGQNFREEEEEEE---KGEVSKKREREANNDDSSLKEDQVVP 210

[Close]

BLAST of CmoCh01G018970.1 vs. NCBI nr
Match: gi|778696122|ref|XP_011654107.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X3 [Cucumis sativus])

HSP 1 Score: 326.6 bits (836), Expect = 3.6e-86
Identity = 175/245 (71.43%), Postives = 194/245 (79.18%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 240

Query: 241 DQVVP 242
           DQVVP
Sbjct: 241 DQVVP 242

[Close]

BLAST of CmoCh01G018970.1 vs. NCBI nr
Match: gi|700200035|gb|KGN55193.1| (hypothetical protein Csa_4G639810 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 2.0e-84
Identity = 172/243 (70.78%), Postives = 192/243 (79.01%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 77  MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 136

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 137 LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 196

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 197 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 256

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 240
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 257 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 316

[Close]

BLAST of CmoCh01G018970.1 vs. NCBI nr
Match: gi|449446999|ref|XP_004141257.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X1 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.6e-84
Identity = 172/242 (71.07%), Postives = 191/242 (78.93%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 239
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 239

[Close]

BLAST of CmoCh01G018970.1 vs. NCBI nr
Match: gi|449447001|ref|XP_004141258.1| (PREDICTED: uncharacterized protein LOC101214397 isoform X2 [Cucumis sativus])

HSP 1 Score: 320.5 bits (820), Expect = 2.6e-84
Identity = 172/242 (71.07%), Postives = 191/242 (78.93%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LPPNL++L P+ETR DSL+SE   D+STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPPNLDSLNPRETRADSLVSEFVKDQSTEFSRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASH HS  GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPTKDNSSRTKLLSKSQSASHGHSQFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHFRAARKNKNV CKS AI SR RN L  GA  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFRAARKNKNVVCKSQAIGSRGRNSLSLGAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLIN 239
             GP+RA +SDLSQ  I NNKEVSDQNFVD   EV +V KGS DCN KR   SETN LIN
Sbjct: 181 NSGPIRASDSDLSQQYISNNKEVSDQNFVD---EVIEVEKGSIDCNAKRANASETNALIN 239

[Close]

BLAST of CmoCh01G018970.1 vs. NCBI nr
Match: gi|659103270|ref|XP_008452552.1| (PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo])

HSP 1 Score: 298.5 bits (763), Expect = 1.0e-77
Identity = 160/226 (70.80%), Postives = 179/226 (79.20%), Query Frame = 1


Query: 1   MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHH 60
           ME+LP NL+NL  +E R+DSL+SE   D STE     ESSS+GT MT+SVPSDWTDEKHH
Sbjct: 1   MELLPRNLDNLNSREARSDSLVSEFVKDGSTEFCRPIESSSRGTHMTDSVPSDWTDEKHH 60

Query: 61  LFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSW 120
           LFLESMEASFVSQMFDS HS G+   K+NSS TKL  +SQ+ASHVHSH GQFKVLR+GSW
Sbjct: 61  LFLESMEASFVSQMFDSGHSVGSCPSKDNSSRTKLLSKSQSASHVHSHFGQFKVLRRGSW 120

Query: 121 KNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGA-- 180
           KN+NFEPTE+R N LN+YQALS NPWIHHF+AARKNKNVACKS AI SR RN L   A  
Sbjct: 121 KNINFEPTESRSNFLNEYQALSHNPWIHHFKAARKNKNVACKSQAIGSRGRNSLSLEAAN 180

Query: 181 --GPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCN 223
             GP+RA NSDLSQ  I +NKEVSDQNFVD   EV +V KGS DCN
Sbjct: 181 NSGPIRASNSDLSQQYISSNKEVSDQNFVD---EVVEVEKGSRDCN 223

The following BLAST results are available for this feature:

BLAST of CmoCh01G018970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G018970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0A2_CUCSA	1.4e-84	70.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G639810 PE=4 SV=1	[more]
A0A061FC20_THECC	6.0e-24	37.29	Cold regulated gene 27, putative isoform 1 OS=Theobroma cacao GN=TCM_033832 PE=4...	[more]
E0CPV3_VITVI	7.9e-24	35.74	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10480 PE=4 SV=...	[more]
A0A061FAS9_THECC	3.0e-23	36.86	Cold regulated gene 27, putative isoform 3 OS=Theobroma cacao GN=TCM_033832 PE=4...	[more]
A0A0D2R0L4_GOSRA	8.7e-23	37.29	Uncharacterized protein OS=Gossypium raimondii GN=B456_010G020000 PE=4 SV=1	[more]

BLAST of CmoCh01G018970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G42900.1	1.5e-13	31.48	cold regulated gene 27	[more]
AT4G33980.2	7.8e-07	25.54	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh01G018970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778696122\|ref\|XP_011654107.1\|	3.6e-86	71.43	PREDICTED: uncharacterized protein LOC101214397 isoform X3 [Cucumis sativus]	[more]
gi\|700200035\|gb\|KGN55193.1\|	2.0e-84	70.78	hypothetical protein Csa_4G639810 [Cucumis sativus]	[more]
gi\|449446999\|ref\|XP_004141257.1\|	2.6e-84	71.07	PREDICTED: uncharacterized protein LOC101214397 isoform X1 [Cucumis sativus]	[more]
gi\|449447001\|ref\|XP_004141258.1\|	2.6e-84	71.07	PREDICTED: uncharacterized protein LOC101214397 isoform X2 [Cucumis sativus]	[more]
gi\|659103270\|ref\|XP_008452552.1\|	1.0e-77	70.80	PREDICTED: uncharacterized protein LOC103493542 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G018970	CmoCh01G018970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018970.1	CmoCh01G018970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018970.1.exon.5	CmoCh01G018970.1.exon.5	exon
CmoCh01G018970.1.exon.4	CmoCh01G018970.1.exon.4	exon
CmoCh01G018970.1.exon.3	CmoCh01G018970.1.exon.3	exon
CmoCh01G018970.1.exon.2	CmoCh01G018970.1.exon.2	exon
CmoCh01G018970.1.exon.1	CmoCh01G018970.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018970.1.five_prime_UTR.1	CmoCh01G018970.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G018970.1.CDS.1	CmoCh01G018970.1.CDS.1	CDS
CmoCh01G018970.1.CDS.2	CmoCh01G018970.1.CDS.2	CDS
CmoCh01G018970.1.CDS.3	CmoCh01G018970.1.CDS.3	CDS
CmoCh01G018970.1.CDS.4	CmoCh01G018970.1.CDS.4	CDS
CmoCh01G018970.1.CDS.5	CmoCh01G018970.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33676	FAMILY NOT NAMED	coord: 21..241 score: 4.0
None	No IPR available	PANTHER	PTHR33676:SF3	COLD REGULATED PROTEIN 27	coord: 21..241 score: 4.0