CmoCh01G014040 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G014040
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant protein
Location	Cmo_Chr01 : 11055535 .. 11056140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAAATTTCCTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTTGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGGATAAGTAA

mRNA sequence

ATGCCACCAAATTTCCTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTTGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGGATAAGTAA

Coding sequence (CDS)

ATGCCACCAAATTTCCTATCCAGCCTAAAGCGGCATACTCATCCCCTGATTTGGATTGCCGGCATAATCTGTGCTGCCATAGCCCTAGCAGTGATAATCGCAGGCATCGTCATCTTCATCGGCTATGTAACGATCCGCCCTAGGGTGCCTACAATCAGCGTAACCGACGGACATCTCGACAGAATCCGAAGCAGCAGAACCGGCTTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACACGCAAGCTTCTCACATACCGATTTCGTCCTTATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGACCGTTCAAAGTGAACAAAATGAGTTACCTGGATTTGCACTTCTTAGTGGAATCGTCGGCGATTCCGCTAAATCCAACGCAGATGCAGCATCTAGGCTGGTCGCTGAAGAGGAATCTGATGCAGTTCGATCTGAAAGGAAGCTCGAGAACTCGATGGAGAGTTGGAGTTCTTGGACCGCTGAAGTTTTGGTGCCGTTTGAACTGCCATCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCCTGTTCTTCGAGGGATAAGTAA

Homology

[Close]

BLAST of CmoCh01G014040 vs. TrEMBL
Match: A0A0A0L1I9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G242860 PE=4 SV=1)

HSP 1 Score: 378.3 bits (970), Expect = 6.0e-102
Identity = 183/201 (91.04%), Postives = 194/201 (96.52%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHL+
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHA FS TDFVL+FDGIEIASLVAHRPFKVNKM+
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHL WSLKR+L+QFDLKGSSRTRWRVGVLGPLKFWCRL+C
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
           HLRF+PRNGSYIP PCSS+ K
Sbjct: 181 HLRFFPRNGSYIPTPCSSKQK 201

[Close]

BLAST of CmoCh01G014040 vs. TrEMBL
Match: M5WBE7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014689mg PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.4e-58
Identity = 113/197 (57.36%), Postives = 144/197 (73.10%), Query Frame = 1


Query: 5   FLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRS 64
           F  + +R THPL+W A +IC  IA+AVIIAGI +F GY+ I PRVP I+VT  HLD  ++
Sbjct: 6   FHGATQRTTHPLVWFAAVICTVIAIAVIIAGIALFAGYMIIHPRVPFITVTSAHLDNFQN 65

Query: 65  SRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDL 124
           S  GLL+ ++ I+V+AEN N +AHASFS T F L F G+ IA LVA  PF V K S +D 
Sbjct: 66  SVAGLLDTEITIIVKAENDNTKAHASFSDTSFTLSFQGLNIARLVA-LPFDVKKNSSVDF 125

Query: 125 HFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRF 184
           H+LV+SS+IPL+P QM  +  SLKR+ + F+LKG+ R RWRVG +G +KFW  LNCHLRF
Sbjct: 126 HYLVQSSSIPLSPEQMDQIDISLKRDKISFNLKGNLRARWRVGPIGSVKFWGHLNCHLRF 185

Query: 185 YPRNGSYIPAPCSSRDK 202
           +P NGSYI +PCSSR K
Sbjct: 186 HPSNGSYIHSPCSSRAK 201

[Close]

BLAST of CmoCh01G014040 vs. TrEMBL
Match: V4T9C5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003495mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 110/201 (54.73%), Postives = 145/201 (72.14%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP F    +R THPLIW+  IIC  +A+AVIIAGIV+F GY+ + PR+P +SV   HLD
Sbjct: 1   MPPKFFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
             +    GLLE Q+ IV+R  N NA+A ASFS T   L FDG++IA LVA  PF+V+K S
Sbjct: 61  LFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
            +D +++VES  +PL+P   +    SLK+++++FDLKG SRTRWR+GVLG +KFWCRL+C
Sbjct: 121 SVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIGVLGSVKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
            L+F+P NGSYIP+ CSS  K
Sbjct: 181 QLKFHPSNGSYIPSRCSSTTK 200

[Close]

BLAST of CmoCh01G014040 vs. TrEMBL
Match: A0A067DL89_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029005mg PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-57
Identity = 110/201 (54.73%), Postives = 145/201 (72.14%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP F    +R THPLIW+  IIC  +A+AVIIAGIV+F GY+ + PR+P +SV   HLD
Sbjct: 1   MPPKFFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
             +    GLLE Q+ IV+R  N NA+A ASFS T   L FDG++IA LVA  PF+V+K S
Sbjct: 61  LFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
            +D +++VES  +PL+P   +    SLK+++++FDLKG SRTRWR+GVLG +KFWCRL+C
Sbjct: 121 SVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIGVLGSVKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
            L+F+P NGSYIP+ CSS  K
Sbjct: 181 QLKFHPSNGSYIPSRCSSTTK 200

[Close]

BLAST of CmoCh01G014040 vs. TrEMBL
Match: A0A0A0KX91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056550 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.9e-56
Identity = 106/201 (52.74%), Postives = 147/201 (73.13%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP  +S  KRHTHPL+W+A ++C  +++AVII GIV+FIGY+ I PR+PTIS+ D HLD
Sbjct: 1   MPPKLISDAKRHTHPLVWLAALLCTVVSIAVIIGGIVVFIGYLVIHPRIPTISILDAHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
             +    G LEVQ+ I++ A+N NA+AHASFS + F L F GI+IA LVA  PF+V K S
Sbjct: 61  NFQIDIAGRLEVQLTIIIEAKNDNAKAHASFSDSSFFLHFLGIKIAQLVAD-PFEVRKNS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
            +   + V S++IPLNP QM+ +   LK +L +FDL G++R +WRVG+LG +K+ C L+C
Sbjct: 121 SMKFPYAVVSNSIPLNPEQMESVDSDLKADLSRFDLIGNTRVQWRVGLLGSVKYECHLHC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
            L+F+P NG+Y+ +PCSSR K
Sbjct: 181 GLKFHPSNGTYLSSPCSSRVK 200

[Close]

BLAST of CmoCh01G014040 vs. TAIR10
Match: AT5G45320.1 (AT5G45320.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 199.9 bits (507), Expect = 1.5e-51
Identity = 100/192 (52.08%), Postives = 135/192 (70.31%), Query Frame = 1


Query: 11  RH-THPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGL 70
           RH T P IW A IICA I++ VI+ GI++F+GY+ I PRVP ISV D HLD ++    G+
Sbjct: 7   RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKYDIVGV 66

Query: 71  LEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVE 130
           L+ Q+ IV+R EN NA+AHA F  T+F L ++G  IA L A   F+V K   + L +LV+
Sbjct: 67  LQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPE-FEVVKEKSMFLPYLVQ 126

Query: 131 SSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRFYPRNG 190
           S  IPLNPT MQ + +++K++++ F+LKG SRTRWRVG LG +KF C L+C LRF P + 
Sbjct: 127 SYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPSDH 186

Query: 191 SYIPAPCSSRDK 202
           SYIP+PC+S  K
Sbjct: 187 SYIPSPCTSAHK 197

[Close]

BLAST of CmoCh01G014040 vs. TAIR10
Match: AT3G26350.1 (AT3G26350.1 LOCATED IN: chloroplast)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-11
Identity = 43/170 (25.29%), Postives = 78/170 (45.88%), Query Frame = 1


Query: 11  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGLL 70
           R T+ + W A   CA   + +I+ G++I I Y+  RPR P + ++  +L+        LL
Sbjct: 167 RETNAMTWSAAFCCAIFWVILILGGLIILIVYLVYRPRSPYVDISAANLNAAYLDMGFLL 226

Query: 71  EVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVES 130
              + I+    N + ++   FS+  F L +    IA+     PFKV K + +  +  + S
Sbjct: 227 NGDLTILANVTNPSKKSSVEFSYVTFELYYYNTLIATQYI-EPFKVPKKTSMFANVHLVS 286

Query: 131 SAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 181
           S + L  TQ + L   ++   +  +L+G    R  +G L    +    +C
Sbjct: 287 SQVQLQATQSRELQRQIETGPVLLNLRGMFHARSHIGPLFRYSYKLHTHC 335

[Close]

BLAST of CmoCh01G014040 vs. TAIR10
Match: AT1G13050.1 (AT1G13050.1 unknown protein)

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 44/173 (25.43%), Postives = 78/173 (45.09%), Query Frame = 1


Query: 11  RHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGLL 70
           + T P+   A I CA + + +I++G+++ + Y+  RPR P   ++   L+        +L
Sbjct: 128 KRTKPMTLPATICCAILLIVLILSGLILLLVYLANRPRSPYFDISAATLNTANLDMGYVL 187

Query: 71  EVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAH-RPFKVNKMSYLDLHFLVE 130
              + +VV   N + ++   FS+  F L F    IA+   H  PF V K   +   F + 
Sbjct: 188 NGDLAVVVNFTNPSKKSSVDFSYVMFELYFYNTLIAT--EHIEPFIVPKGMSMFTSFHLV 247

Query: 131 SSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHL 183
           SS + +   Q Q L   L    +  +L+G+   R  +G L    +W    C +
Sbjct: 248 SSQVQIQMIQSQDLQLQLGTGPVLLNLRGTFHARSNLGSLMRYSYWLHTQCSI 298

[Close]

BLAST of CmoCh01G014040 vs. NCBI nr
Match: gi|700198828|gb|KGN53986.1| (hypothetical protein Csa_4G242860 [Cucumis sativus])

HSP 1 Score: 378.3 bits (970), Expect = 8.6e-102
Identity = 183/201 (91.04%), Postives = 194/201 (96.52%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPPNFLSSLKRHTHPLIWIAGIICA IALAVIIAGIVIFIGYVTIRPRVP+ISVTDGHL+
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
           RIRSSRTGLLEVQMKIVVRAENQNA+AHA FS TDFVL+FDGIEIASLVAHRPFKVNKM+
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
           YLDLHFLVESSAIPL+ TQMQHL WSLKR+L+QFDLKGSSRTRWRVGVLGPLKFWCRL+C
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
           HLRF+PRNGSYIP PCSS+ K
Sbjct: 181 HLRFFPRNGSYIPTPCSSKQK 201

[Close]

BLAST of CmoCh01G014040 vs. NCBI nr
Match: gi|645265122|ref|XP_008238002.1| (PREDICTED: uncharacterized protein LOC103336689 [Prunus mume])

HSP 1 Score: 236.9 bits (603), Expect = 3.1e-59
Identity = 114/197 (57.87%), Postives = 145/197 (73.60%), Query Frame = 1


Query: 5   FLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRS 64
           F  + +R THPL+W A +IC  IA+AVII GIV+F+GY+ I PRVP I+VT  HLD  ++
Sbjct: 6   FHGATQRATHPLVWFAAVICTVIAIAVIITGIVVFVGYMIIHPRVPFITVTSAHLDNFQN 65

Query: 65  SRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDL 124
           S  GLL+ ++ ++VRAEN N +AHASFS T F L F G+ IA LVA  PF V K S +D 
Sbjct: 66  SVAGLLDTEITLIVRAENDNPKAHASFSDTSFTLSFQGLNIARLVA-LPFDVKKNSSVDF 125

Query: 125 HFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRF 184
           H+LV+SS+IPL+P QM  +  SLKR+ + F+LKG+SR RWRVG  G +KFW  LNCHLRF
Sbjct: 126 HYLVQSSSIPLSPEQMDQIDISLKRDKISFNLKGNSRARWRVGPFGSVKFWDHLNCHLRF 185

Query: 185 YPRNGSYIPAPCSSRDK 202
           +P NGSYI +PCSSR K
Sbjct: 186 HPSNGSYIHSPCSSRAK 201

[Close]

BLAST of CmoCh01G014040 vs. NCBI nr
Match: gi|595850056|ref|XP_007209845.1| (hypothetical protein PRUPE_ppa014689mg [Prunus persica])

HSP 1 Score: 233.4 bits (594), Expect = 3.4e-58
Identity = 113/197 (57.36%), Postives = 144/197 (73.10%), Query Frame = 1


Query: 5   FLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRS 64
           F  + +R THPL+W A +IC  IA+AVIIAGI +F GY+ I PRVP I+VT  HLD  ++
Sbjct: 6   FHGATQRTTHPLVWFAAVICTVIAIAVIIAGIALFAGYMIIHPRVPFITVTSAHLDNFQN 65

Query: 65  SRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDL 124
           S  GLL+ ++ I+V+AEN N +AHASFS T F L F G+ IA LVA  PF V K S +D 
Sbjct: 66  SVAGLLDTEITIIVKAENDNTKAHASFSDTSFTLSFQGLNIARLVA-LPFDVKKNSSVDF 125

Query: 125 HFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRF 184
           H+LV+SS+IPL+P QM  +  SLKR+ + F+LKG+ R RWRVG +G +KFW  LNCHLRF
Sbjct: 126 HYLVQSSSIPLSPEQMDQIDISLKRDKISFNLKGNLRARWRVGPIGSVKFWGHLNCHLRF 185

Query: 185 YPRNGSYIPAPCSSRDK 202
           +P NGSYI +PCSSR K
Sbjct: 186 HPSNGSYIHSPCSSRAK 201

[Close]

BLAST of CmoCh01G014040 vs. NCBI nr
Match: gi|567880675|ref|XP_006432896.1| (hypothetical protein CICLE_v10003495mg [Citrus clementina])

HSP 1 Score: 231.1 bits (588), Expect = 1.7e-57
Identity = 110/201 (54.73%), Postives = 145/201 (72.14%), Query Frame = 1


Query: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60
           MPP F    +R THPLIW+  IIC  +A+AVIIAGIV+F GY+ + PR+P +SV   HLD
Sbjct: 1   MPPKFFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLD 60

Query: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120
             +    GLLE Q+ IV+R  N NA+A ASFS T   L FDG++IA LVA  PF+V+K S
Sbjct: 61  LFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNS 120

Query: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180
            +D +++VES  +PL+P   +    SLK+++++FDLKG SRTRWR+GVLG +KFWCRL+C
Sbjct: 121 SVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIGVLGSVKFWCRLDC 180

Query: 181 HLRFYPRNGSYIPAPCSSRDK 202
            L+F+P NGSYIP+ CSS  K
Sbjct: 181 QLKFHPSNGSYIPSRCSSTTK 200

[Close]

BLAST of CmoCh01G014040 vs. NCBI nr
Match: gi|1009158815|ref|XP_015897483.1| (PREDICTED: uncharacterized protein LOC107431113 [Ziziphus jujuba])

HSP 1 Score: 228.8 bits (582), Expect = 8.5e-57
Identity = 107/192 (55.73%), Postives = 145/192 (75.52%), Query Frame = 1


Query: 10  KRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLDRIRSSRTGL 69
           ++ THPLIW A IICA IA AVIIAG+ +FIGY+ I PRVP I+V D HLD+I+S   GL
Sbjct: 11  EKRTHPLIWFAAIICAIIATAVIIAGVGVFIGYMVIHPRVPVIAVVDAHLDKIQSDIAGL 70

Query: 70  LEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVE 129
           LE Q+ I+++A+N NA+AHASFS T F+L F G+ IA LVA  PF+V K   ++ +++V 
Sbjct: 71  LETQVTILIKAQNDNAKAHASFSDTSFILSFQGMMIAKLVA-EPFEVKKNDSVEFNYVVP 130

Query: 130 SSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNCHLRFYPRNG 189
           SS+IPL P QM  +  +LK++ + FDL+G+SR RWR+G+ G +KFWC L+C L+F+P NG
Sbjct: 131 SSSIPLTPDQMDEVDLALKQDKITFDLRGNSRARWRIGLFGSVKFWCHLSCRLKFHPLNG 190

Query: 190 SYIPAPCSSRDK 202
           +Y+ APCSSR K
Sbjct: 191 TYMNAPCSSRAK 201

The following BLAST results are available for this feature:

BLAST of CmoCh01G014040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G014040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1I9_CUCSA	6.0e-102	91.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G242860 PE=4 SV=1	[more]
M5WBE7_PRUPE	2.4e-58	57.36	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014689mg PE=4 SV=1	[more]
V4T9C5_9ROSI	1.2e-57	54.73	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003495mg PE=4 SV=1	[more]
A0A067DL89_CITSI	1.2e-57	54.73	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029005mg PE=4 SV=1	[more]
A0A0A0KX91_CUCSA	2.9e-56	52.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G056550 PE=4 SV=1	[more]

BLAST of CmoCh01G014040 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45320.1	1.5e-51	52.08	FUNCTIONS IN: molecular_function unknown	[more]
AT3G26350.1	3.3e-11	25.29	LOCATED IN: chloroplast	[more]
AT1G13050.1	4.8e-10	25.43	unknown protein	[more]

BLAST of CmoCh01G014040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700198828\|gb\|KGN53986.1\|	8.6e-102	91.04	hypothetical protein Csa_4G242860 [Cucumis sativus]	[more]
gi\|645265122\|ref\|XP_008238002.1\|	3.1e-59	57.87	PREDICTED: uncharacterized protein LOC103336689 [Prunus mume]	[more]
gi\|595850056\|ref\|XP_007209845.1\|	3.4e-58	57.36	hypothetical protein PRUPE_ppa014689mg [Prunus persica]	[more]
gi\|567880675\|ref\|XP_006432896.1\|	1.7e-57	54.73	hypothetical protein CICLE_v10003495mg [Citrus clementina]	[more]
gi\|1009158815\|ref\|XP_015897483.1\|	8.5e-57	55.73	PREDICTED: uncharacterized protein LOC107431113 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G014040.1	CmoCh01G014040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 10..201 score: 3.4
None	No IPR available	PANTHER	PTHR31852:SF9	SUBFAMILY NOT NAMED	coord: 10..201 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G014040	CmaCh01G013510	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G014040	CmaCh09G007560	Cucurbita maxima (Rimu)	cmacmoB041
CmoCh01G014040	Cla023207	Watermelon (97103) v1	cmowmB456
CmoCh01G014040	Csa4G242860	Cucumber (Chinese Long) v2	cmocuB459
CmoCh01G014040	MELO3C010534	Melon (DHL92) v3.5.1	cmomeB423
CmoCh01G014040	ClCG11G016180	Watermelon (Charleston Gray)	cmowcgB391
CmoCh01G014040	CSPI04G12170	Wild cucumber (PI 183967)	cmocpiB463
CmoCh01G014040	CSPI04G06890	Wild cucumber (PI 183967)	cmocpiB473
CmoCh01G014040	Lsi04G018540	Bottle gourd (USVL1VR-Ls)	cmolsiB424
CmoCh01G014040	Cp4.1LG02g02900	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G014040	Cp4.1LG06g05950	Cucurbita pepo (Zucchini)	cmocpeB461
CmoCh01G014040	CsaV3_4G014820	Cucumber (Chinese Long) v3	cmocucB0549
CmoCh01G014040	Cla97C11G222120	Watermelon (97103) v2	cmowmbB437
CmoCh01G014040	Bhi09G002293	Wax gourd	cmowgoB0615
CmoCh01G014040	Carg00297	Silver-seed gourd	carcmoB0922
CmoCh01G014040	Carg20071	Silver-seed gourd	carcmoB1400

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh01G014040	CmoCh09G007470	Cucurbita moschata (Rifu)	cmocmoB013

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G014040	Cucumber (Chinese Long) v2	cmocuB469
CmoCh01G014040	Cucumber (Gy14) v2	cgybcmoB481
CmoCh01G014040	Melon (DHL92) v3.6.1	cmomedB487
CmoCh01G014040	Cucumber (Chinese Long) v3	cmocucB0558
CmoCh01G014040	Cucumber (Chinese Long) v3	cmocucB0560
CmoCh01G014040	Cucumber (Gy14) v1	cgycmoB0726