Carg20071 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20071
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_126 : 303714 .. 304448 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAAAATTGAGCTCTGCAACACAACAAAAGTGGTGAGATCATCTGCCAATTCAAATATACCTTCACTTTTACTTTCTTTTCAGTCTAGATTGCAATTAGTTTATGAGAAATTGCATTGGTCTCAGATGCCACCAAATTTCCTATCCAGCCTAAAGCGACATACTCATCCCCTAATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTGTTGCTGTGATTATCGCAGGCATTGTTATCTTCATCGGCTACGTGACGATCCGCCCTACGGTGCCTTCAATCAGCGTAACCGACGGACATCTCGATAGAATCCGAAACAGCAGAATCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACAGGCAAGCTTCTCACATACCGATTTCGTCCTGATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAATAAGATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCATCGGCTATTCCGCTCAATCCTATGCAGATGCAGCATCTAAGCTGGTCGCTGAATAGGAATTTGATGCAATTCGATCTTAAAGGAAGCTCCAGAACTCGATGGCGAGTTGGAGTTCTGGGACCGCTCAAGTTTTGGTGCCAATTGAACTGTCGCCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCTTGTTCTTCAAAGGATAAGTAA

mRNA sequence

ATGCCTAAAATTGAGCTCTGCAACACAACAAAAGTGATGCCACCAAATTTCCTATCCAGCCTAAAGCGACATACTCATCCCCTAATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTGTTGCTGTGATTATCGCAGGCATTGTTATCTTCATCGGCTACGTGACGATCCGCCCTACGGTGCCTTCAATCAGCGTAACCGACGGACATCTCGATAGAATCCGAAACAGCAGAATCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACAGGCAAGCTTCTCACATACCGATTTCGTCCTGATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAATAAGATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCATCGGCTATTCCGCTCAATCCTATGCAGATGCAGCATCTAAGCTGGTCGCTGAATAGGAATTTGATGCAATTCGATCTTAAAGGAAGCTCCAGAACTCGATGGCGAGTTGGAGTTCTGGGACCGCTCAAGTTTTGGTGCCAATTGAACTGTCGCCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCTTGTTCTTCAAAGGATAAGTAA

Coding sequence (CDS)

ATGCCTAAAATTGAGCTCTGCAACACAACAAAAGTGATGCCACCAAATTTCCTATCCAGCCTAAAGCGACATACTCATCCCCTAATTTGGATTGCCGGCATAATCTGCGCCACCATAGCTGTTGCTGTGATTATCGCAGGCATTGTTATCTTCATCGGCTACGTGACGATCCGCCCTACGGTGCCTTCAATCAGCGTAACCGACGGACATCTCGATAGAATCCGAAACAGCAGAATCGGATTGCTTGAAGTCCAGATGAAGATCGTCGTCCGAGCCGAGAATCAAAATGCTAGAGCACAGGCAAGCTTCTCACATACCGATTTCGTCCTGATCTTCGACGGCATAGAAATCGCATCACTGGTGGCTCACCGGCCGTTCAAAGTGAATAAGATGAGTTACCTGGATTTGCATTTCTTAGTGGAATCATCGGCTATTCCGCTCAATCCTATGCAGATGCAGCATCTAAGCTGGTCGCTGAATAGGAATTTGATGCAATTCGATCTTAAAGGAAGCTCCAGAACTCGATGGCGAGTTGGAGTTCTGGGACCGCTCAAGTTTTGGTGCCAATTGAACTGTCGCCTCAGGTTTTACCCGCGCAATGGAAGCTACATTCCCGCGCCTTGTTCTTCAAAGGATAAGTAA

Protein sequence

MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNCRLRFYPRNGSYIPAPCSSKDK

Homology

[Close]

BLAST of Carg20071 vs. NCBI nr
Match: XP_022937013.1 (uncharacterized protein LOC111443437 [Cucurbita moschata])

HSP 1 Score: 428.3 bits (1100), Expect = 1.5e-116
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 0


Query: 1   MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPT 60
           MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPT
Sbjct: 1   MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPT 60

Query: 61  VPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL 120
           VPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL
Sbjct: 61  VPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL 120

Query: 121 VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180
           VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV
Sbjct: 121 VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180

Query: 181 LGPLKFWCQLNCRLRFYPRNGSYIPAPCSSKDK 214
           LGPLKFWC LNCRLRFYPRNGSYIPAPCSSKDK
Sbjct: 181 LGPLKFWCHLNCRLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Carg20071 vs. NCBI nr
Match: XP_022976855.1 (uncharacterized protein LOC111477102 [Cucurbita maxima])

HSP 1 Score: 419.1 bits (1076), Expect = 9.1e-114
Identity = 206/213 (96.71%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPT 60
           MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIA+AVIIAGIVIFIGYVT RPT
Sbjct: 1   MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTTRPT 60

Query: 61  VPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL 120
           VPSISVTDGHLDRIRNSRIGLLEVQMK+VVRAENQNAR QA FSHTDFVLIFDGIEIASL
Sbjct: 61  VPSISVTDGHLDRIRNSRIGLLEVQMKLVVRAENQNARTQARFSHTDFVLIFDGIEIASL 120

Query: 121 VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180
           VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV
Sbjct: 121 VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180

Query: 181 LGPLKFWCQLNCRLRFYPRNGSYIPAPCSSKDK 214
           LGPLKFWC LNC LRFYPRNGSYIPAPCSSKDK
Sbjct: 181 LGPLKFWCHLNCHLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Carg20071 vs. NCBI nr
Match: XP_023536457.1 (uncharacterized protein LOC111797630 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.9 bits (1060), Expect = 6.5e-112
Identity = 206/213 (96.71%), Postives = 208/213 (97.65%), Query Frame = 0


Query: 1   MPKIELCNTTKVMPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPT 60
           MPKIEL NTTKVMPPNFLSSLKRHT PLIW+AGIICATIAVAVIIAGIV FIGYVTIRPT
Sbjct: 1   MPKIELSNTTKVMPPNFLSSLKRHTRPLIWMAGIICATIAVAVIIAGIVNFIGYVTIRPT 60

Query: 61  VPSISVTDGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL 120
           VPSISVT GHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL
Sbjct: 61  VPSISVTYGHLDRIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASL 120

Query: 121 VAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180
           +AHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV
Sbjct: 121 MAHRPFKVNKMSYLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGV 180

Query: 181 LGPLKFWCQLNCRLRFYPRNGSYIPAPCSSKDK 214
           LGPLKFWC LNCRLRFYPRNGSYIPAPCSSKDK
Sbjct: 181 LGPLKFWCHLNCRLRFYPRNGSYIPAPCSSKDK 213

[Close]

BLAST of Carg20071 vs. NCBI nr
Match: XP_022940744.1 (uncharacterized protein LOC111446247 [Cucurbita moschata])

HSP 1 Score: 382.5 bits (981), Expect = 9.4e-103
Identity = 188/201 (93.53%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MPPNFLSSLKRHTHPLIWIAGIICA IA+AVIIAGIVIFIGYVTIRP VP+ISVTDGHLD
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICAAIALAVIIAGIVIFIGYVTIRPRVPTISVTDGHLD 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
           RIR+SR GLLEVQMKIVVRAENQNARA ASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNARAHASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
           YLDLHFLVESSAIPLNP QMQHL WSL RNLMQFDLKGSSRTRWRVGVLGPLKFWC+LNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMQHLGWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
            LRFYPRNGSYIPAPCSS+DK
Sbjct: 181 HLRFYPRNGSYIPAPCSSRDK 201

[Close]

BLAST of Carg20071 vs. NCBI nr
Match: XP_022135525.1 (uncharacterized protein LOC111007456 [Momordica charantia])

HSP 1 Score: 368.2 bits (944), Expect = 1.8e-98
Identity = 182/201 (90.55%), Postives = 189/201 (94.03%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MPP FLSSLKRHTHPLIWIAGIICATIA+AVII GIVIFIGYVTIRP VPSISVTDGHLD
Sbjct: 1   MPPKFLSSLKRHTHPLIWIAGIICATIALAVIIGGIVIFIGYVTIRPRVPSISVTDGHLD 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
           RIR+SR GLLEVQMKIVVRAENQNA+A ASFS TDFVLIFDGIEIASLVA RPFKV+KMS
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHASFSQTDFVLIFDGIEIASLVARRPFKVSKMS 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
           YLDLHFLVESSAIPLNP QM HLSWSL RNLMQFDLKGSSRTRWRVGVLGPLKFWC+LNC
Sbjct: 121 YLDLHFLVESSAIPLNPTQMDHLSWSLKRNLMQFDLKGSSRTRWRVGVLGPLKFWCRLNC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
            LRF+PRNGSY+PAPCSSK K
Sbjct: 181 HLRFHPRNGSYVPAPCSSKGK 201

[Close]

BLAST of Carg20071 vs. TAIR10
Match: AT5G45320.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 189.9 bits (481), Expect = 1.6e-48
Identity = 96/192 (50.00%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 23  RH-THPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLDRIRNSRIGL 82
           RH T P IW A IICA I++ VI+ GI++F+GY+ I P VP ISV D HLD ++   +G+
Sbjct: 7   RHGTSPFIWCAAIICAIISIVVIVGGIIVFVGYLVIHPRVPIISVADAHLDFLKYDIVGV 66

Query: 83  LEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDLHFLVE 142
           L+ Q+ IV+R EN NA+A A F  T+F L ++G  IA L A   F+V K   + L +LV+
Sbjct: 67  LQTQLTIVIRVENDNAKAHALFDETEFKLSYEGKPIAILKAPE-FEVVKEKSMFLPYLVQ 126

Query: 143 SSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNCRLRFYPRNG 202
           S  IPLNP  MQ + +++ ++++ F+LKG SRTRWRVG LG +KF C L+C+LRF P + 
Sbjct: 127 SYPIPLNPTMMQAVDYAVKKDVITFELKGGSRTRWRVGPLGSVKFECNLSCQLRFRPSDH 186

Query: 203 SYIPAPCSSKDK 214
           SYIP+PC+S  K
Sbjct: 187 SYIPSPCTSAHK 197

[Close]

BLAST of Carg20071 vs. TrEMBL
Match: tr|A0A0A0L1I9|A0A0A0L1I9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 5.1e-97
Identity = 178/201 (88.56%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MPPNFLSSLKRHTHPLIWIAGIICATIA+AVIIAGIVIFIGYVTIRP VPSISVTDGHL+
Sbjct: 1   MPPNFLSSLKRHTHPLIWIAGIICATIALAVIIAGIVIFIGYVTIRPRVPSISVTDGHLE 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
           RIR+SR GLLEVQMKIVVRAENQNA+A A FS TDFVL+FDGIEIASLVAHRPFKVNKM+
Sbjct: 61  RIRSSRTGLLEVQMKIVVRAENQNAKAHAGFSKTDFVLLFDGIEIASLVAHRPFKVNKMN 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
           YLDLHFLVESSAIPL+  QMQHLSWSL R+L+QFDLKGSSRTRWRVGVLGPLKFWC+L+C
Sbjct: 121 YLDLHFLVESSAIPLDSTQMQHLSWSLKRDLIQFDLKGSSRTRWRVGVLGPLKFWCRLDC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
            LRF+PRNGSYIP PCSSK K
Sbjct: 181 HLRFFPRNGSYIPTPCSSKQK 201

[Close]

BLAST of Carg20071 vs. TrEMBL
Match: tr|V4T9C5|V4T9C5_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003495mg PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 107/201 (53.23%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MPP F    +R THPLIW+  IIC  +A+AVIIAGIV+F GY+ + P +P +SV   HLD
Sbjct: 1   MPPKFFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLD 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
             +    GLLE Q+ IV+R  N NA+A ASFS T   L FDG++IA LVA  PF+V+K S
Sbjct: 61  LFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNS 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
            +D +++VES  +PL+P   +    SL +++++FDLKG SRTRWR+GVLG +KFWC+L+C
Sbjct: 121 SVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIGVLGSVKFWCRLDC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
           +L+F+P NGSYIP+ CSS  K
Sbjct: 181 QLKFHPSNGSYIPSRCSSTTK 200

[Close]

BLAST of Carg20071 vs. TrEMBL
Match: tr|A0A067DL89|A0A067DL89_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029005mg PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 107/201 (53.23%), Postives = 144/201 (71.64%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MPP F    +R THPLIW+  IIC  +A+AVIIAGIV+F GY+ + P +P +SV   HLD
Sbjct: 1   MPPKFFPPRRRITHPLIWLIAIICTILAIAVIIAGIVVFTGYLVMHPRIPVMSVVGAHLD 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
             +    GLLE Q+ IV+R  N NA+A ASFS T   L FDG++IA LVA  PF+V+K S
Sbjct: 61  LFQYDEAGLLETQVTIVIRMRNGNAKAGASFSDTSVYLFFDGLKIAQLVAD-PFEVSKNS 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
            +D +++VES  +PL+P   +    SL +++++FDLKG SRTRWR+GVLG +KFWC+L+C
Sbjct: 121 SVDFNYVVESRPVPLDPELQEFADTSLKKDVVRFDLKGGSRTRWRIGVLGSVKFWCRLDC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
           +L+F+P NGSYIP+ CSS  K
Sbjct: 181 QLKFHPSNGSYIPSRCSSTTK 200

[Close]

BLAST of Carg20071 vs. TrEMBL
Match: tr|M5WBE7|M5WBE7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014700 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.8e-54
Identity = 109/197 (55.33%), Postives = 140/197 (71.07%), Query Frame = 0


Query: 17  FLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLDRIRN 76
           F  + +R THPL+W A +IC  IA+AVIIAGI +F GY+ I P VP I+VT  HLD  +N
Sbjct: 6   FHGATQRTTHPLVWFAAVICTVIAIAVIIAGIALFAGYMIIHPRVPFITVTSAHLDNFQN 65

Query: 77  SRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMSYLDL 136
           S  GLL+ ++ I+V+AEN N +A ASFS T F L F G+ IA LVA  PF V K S +D 
Sbjct: 66  SVAGLLDTEITIIVKAENDNTKAHASFSDTSFTLSFQGLNIARLVA-LPFDVKKNSSVDF 125

Query: 137 HFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNCRLRF 196
           H+LV+SS+IPL+P QM  +  SL R+ + F+LKG+ R RWRVG +G +KFW  LNC LRF
Sbjct: 126 HYLVQSSSIPLSPEQMDQIDISLKRDKISFNLKGNLRARWRVGPIGSVKFWGHLNCHLRF 185

Query: 197 YPRNGSYIPAPCSSKDK 214
           +P NGSYI +PCSS+ K
Sbjct: 186 HPSNGSYIHSPCSSRAK 201

[Close]

BLAST of Carg20071 vs. TrEMBL
Match: tr|W9SWL3|W9SWL3_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021339 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 7.0e-54
Identity = 105/201 (52.24%), Postives = 143/201 (71.14%), Query Frame = 0


Query: 13  MPPNFLSSLKRHTHPLIWIAGIICATIAVAVIIAGIVIFIGYVTIRPTVPSISVTDGHLD 72
           MP   +   ++ THP+IW   I+C  +A+AVII G+V+F+GY+ I P+VP ISV   HLD
Sbjct: 1   MPGKLIQGPEKATHPVIWCLAIVCTVVAIAVIITGLVVFVGYLVIHPSVPIISVVSAHLD 60

Query: 73  RIRNSRIGLLEVQMKIVVRAENQNARAQASFSHTDFVLIFDGIEIASLVAHRPFKVNKMS 132
           +++N   GLLE ++ +VV+AEN+NA+A ASFS T F L F GI IA LVA  PF+V K  
Sbjct: 61  KLQNDIAGLLEAELTVVVKAENENAKAHASFSDTSFFLSFQGIVIAKLVA-EPFEVAKND 120

Query: 133 YLDLHFLVESSAIPLNPMQMQHLSWSLNRNLMQFDLKGSSRTRWRVGVLGPLKFWCQLNC 192
            L L + V SS+IPLNP +MQ +  +L  + + FDLKG SR RWRVG+LG +KFWC LNC
Sbjct: 121 SLQLPYKVLSSSIPLNPEEMQQVDMALKDDRITFDLKGHSRARWRVGLLGSVKFWCNLNC 180

Query: 193 RLRFYPRNGSYIPAPCSSKDK 214
           +L+F+P  GSY+ +PC+S+ K
Sbjct: 181 QLKFHPLTGSYMSSPCTSRAK 200

The following BLAST results are available for this feature:

BLAST of Carg20071 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937013.1	1.5e-116	99.53	uncharacterized protein LOC111443437 [Cucurbita moschata]	[more]
XP_022976855.1	9.1e-114	96.71	uncharacterized protein LOC111477102 [Cucurbita maxima]	[more]
XP_023536457.1	6.5e-112	96.71	uncharacterized protein LOC111797630 [Cucurbita pepo subsp. pepo]	[more]
XP_022940744.1	9.4e-103	93.53	uncharacterized protein LOC111446247 [Cucurbita moschata]	[more]
XP_022135525.1	1.8e-98	90.55	uncharacterized protein LOC111007456 [Momordica charantia]	[more]

BLAST of Carg20071 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45320.1	1.6e-48	50.00	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg20071 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg20071 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L1I9\|A0A0A0L1I9_CUCSA	5.1e-97	88.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G242860 PE=4 SV=1	[more]
tr\|V4T9C5\|V4T9C5_9ROSI	1.1e-54	53.23	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10003495mg PE=4 ...	[more]
tr\|A0A067DL89\|A0A067DL89_CITSI	1.1e-54	53.23	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g029005mg PE=4 SV=1	[more]
tr\|M5WBE7\|M5WBE7_PRUPE	1.8e-54	55.33	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G014700 PE=4 SV=1	[more]
tr\|W9SWL3\|W9SWL3_9ROSA	7.0e-54	52.24	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021339 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20071-RA	Carg20071-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 22..212
None	No IPR available	PANTHER	PTHR31852:SF9	SUBFAMILY NOT NAMED	coord: 22..212

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20071	Cla023207	Watermelon (97103) v1	carwmB1046
Carg20071	Csa4G242860	Cucumber (Chinese Long) v2	carcuB1059
Carg20071	MELO3C010534	Melon (DHL92) v3.5.1	carmeB1012
Carg20071	ClCG11G016180	Watermelon (Charleston Gray)	carwcgB1018
Carg20071	CSPI04G12170	Wild cucumber (PI 183967)	carcpiB1081
Carg20071	CmaCh09G007560	Cucurbita maxima (Rimu)	carcmaB1445
Carg20071	CmaCh01G013510	Cucurbita maxima (Rimu)	carcmaB1446
Carg20071	CmoCh09G007470	Cucurbita moschata (Rifu)	carcmoB1399
Carg20071	CmoCh01G014040	Cucurbita moschata (Rifu)	carcmoB1400
Carg20071	Lsi04G018540	Bottle gourd (USVL1VR-Ls)	carlsiB954
Carg20071	Cp4.1LG06g05950	Cucurbita pepo (Zucchini)	carcpeB1455
Carg20071	Cp4.1LG02g02900	Cucurbita pepo (Zucchini)	carcpeB1454
Carg20071	CsaV3_4G014820	Cucumber (Chinese Long) v3	carcucB1092
Carg20071	Cla97C11G222120	Watermelon (97103) v2	carwmbB1104
Carg20071	Bhi09G002293	Wax gourd	carwgoB1225

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20071	Carg00297	Silver-seed gourd	carcarB574

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20071	Cucumber (Gy14) v2	carcgybB1028
Carg20071	Cucumber (Gy14) v2	carcgybB1030
Carg20071	Cucumber (Chinese Long) v2	carcuB1061
Carg20071	Cucumber (Chinese Long) v3	carcucB1094
Carg20071	Melon (DHL92) v3.6.1	carmedB1024