CmoCh01G008780 (gene) Cucurbita moschata (Rifu)

NameCmoCh01G008780
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransmembrane protein, putative
LocationCmo_Chr01 : 4777424 .. 4779047 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCCATTAGAAAAAAATAAAAATAAAAAACCGGCTAAAATTCCGCCATTTTCGACCCTTCCCAATTTCCTTCTCAAGAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAAGTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGGTACAAATCCACCTTTTCGATTTTCAAATTCTAAATTCGGTTTTATGTTCTTTGTAACTCTGGTAGCTAGACCGAGTTGAATTTATTAAAGAATTGTAGCTATGATGATTGTTTGTTGCTTTTCTGCTGAAATTATTGTCGCATTGTTTTTTATTGTAGATTTTAGGGTAACGTTGTTCTGTTCCGTAATGGTTTGGGGAATTACCGTTCTTAGGATTCATGGCATTTGAATTGTAATAAGCAAAATGAATGGGTGGAATAGATGATTCGATATTTTGATTGCAATTTCTTGGAAAATTACTACAATTTCACGAATTCCCTGTTTACCTTTTTCCTCCCTTTTTGCCGCTTGCTGTATATTTGTGTTTCTTGAGGAGGCATTTGAAATTGTGATGATTTAATTTCTTACGTTTTTGACTTGTGTGAAAATGAAAAACAAGATGAATGTAATTGAATTTGAATGTGTCTTATAATTTAGACCGCGAGTTGTAGTTGGATGGACAAATGATTGTTTGGTTATGGTTTTGGTTTTGTTCTTCTTGTCATTCCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTATGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGAGCTCTCTGATCCTCGTCCTCCATATCCAACCAATTAAGAGGAGGTGCACATTGCGGATTCCATTGCCTTCTGTTTAATGATATGTACAAGCTTTTTGATCTTATCCTGATTTTTTTTTTGGTTCGTAAAATCATAGCAAATTCTTTGTTGTCAATTAGTTTTGAATAATGTTATTGCTCCTTCAATCATTCATCTATACATGTGTATGATCTCTGAGGCATGTTTCAAATATAAATCATTGTTTAGACAATTGTTCATATTAGAAAATACATGGAGATTGAATACTAAGCATGTCATTTGATTATGAAGAAACCTTATAAAAAATGCTTCATTTTCCTCTCCAACCAACGTGGATCCCATAGTGAACGTCACCCACTTGTATTGTGTTTTTATTGAAAAGTTGAAGGTTTATGATAAGCGGATTTGGTTTGACCCAATTGATTTGTGTTCTGATTTGTCTGAACATGTAGTAAAGCACTTTTGCAGAGGCTGTTTTGAGCTAAGAATTTTGGTGGTTTGTGGAGCAGCCAGCACCAGCAGGTACTCATAGCTTTAAGACTTACTTCAATAGTTTTGGCCCAAACAAACTGCTCTGAGTTAGTCTAATAGTCTCATTGGGGCAAGG

mRNA sequence

TCTCCATTAGAAAAAAATAAAAATAAAAAACCGGCTAAAATTCCGCCATTTTCGACCCTTCCCAATTTCCTTCTCAAGAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAAGTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTATGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGAGCTCTCTGATCCTCGTCCTCCATATCCAACCAATTAAGAGGAGTAAAGCACTTTTGCAGAGGCTGTTTTGAGCTAAGAATTTTGGTGGTTTGTGGAGCAGCCAGCACCAGCAGGTACTCATAGCTTTAAGACTTACTTCAATAGTTTTGGCCCAAACAAACTGCTCTGAGTTAGTCTAATAGTCTCATTGGGGCAAGG

Coding sequence (CDS)

ATGTCTCGATCTCGAAGCTCCATATCTCTGCAAGTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTATGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA
BLAST of CmoCh01G008780 vs. TrEMBL
Match: A0A0A0KXZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650624 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 1

Query: 1   MSRSRSSISLQVLSFLLSLSL-HSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIIC 60
           MS S+SS SLQ L F+ S    HSLSVLA ++SSAKDG KTKK DA +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
           LGVVT I F VILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CmoCh01G008780 vs. TrEMBL
Match: B9IQD2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10570g PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 6.7e-20
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1

Query: 9   SLQV-LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF 68
           SLQ+ + F LS+SLH LS LA D ++ KD  T K  +    S GIK++I CL VV  I F
Sbjct: 9   SLQIFVIFFLSISLHLLSGLASDPANPKD--TNKPASHSKSSVGIKVVIACLSVVAIIGF 68

Query: 69  YVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            ++L K+WQKKKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 69  TMLLIKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 104

BLAST of CmoCh01G008780 vs. TrEMBL
Match: A0A0B2NP95_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_022254 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 5   RSSISLQVLSFLLSLSLHSLSVLAGDHSSAK-DGKTKKHDAPKSPSTGIKMLIICLGVVT 64
           R S+   +L  L SL L  LS L  + S AK + K   H A +S S G+K++II LGVVT
Sbjct: 5   RRSLQYPLLLALTSLHLQHLSGLDNNPSGAKNENKDVNHHASRS-SVGLKIIIIFLGVVT 64

Query: 65  FIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            IAF V LFKLWQ+KKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 65  VIAFCVFLFKLWQRKKREEQHARLLKLFEDDDELEVELGMRD 105

BLAST of CmoCh01G008780 vs. TrEMBL
Match: I1KW74_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G237900 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-19
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 5   RSSISLQVLSFLLSLSLHSLSVLAGDHSSAK-DGKTKKHDAPKSPSTGIKMLIICLGVVT 64
           R S+   +L  L SL L  LS L  + S AK + K   H A +S S G+K++II LGVVT
Sbjct: 5   RRSLQYPLLLALTSLHLQHLSGLDNNPSGAKNENKDVNHHASRS-SVGLKIIIIFLGVVT 64

Query: 65  FIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            IAF V LFKLWQ+KKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 65  VIAFCVFLFKLWQRKKREEQHARLLKLFEDDDELEVELGMRD 105

BLAST of CmoCh01G008780 vs. TrEMBL
Match: A0A0L9VHC3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g275300 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-18
Identity = 61/102 (59.80%), Postives = 75/102 (73.53%), Query Frame = 1

Query: 5   RSSISLQVLSFLLSLSLHSLSVLAGDHSSAK-DGKTKKHDAPKSPSTGIKMLIICLGVVT 64
           R S+    L  L+SL L  LS L  + S AK + +   H A +S S G++++IICLG+VT
Sbjct: 4   RRSLRNPFLLALISLHLQLLSGLDNNPSDAKNENEDVNHHASRS-SVGLRIVIICLGMVT 63

Query: 65  FIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            IAF V LFKLWQ+KKREEQHARLLKLFE+DDELEVELG+RD
Sbjct: 64  VIAFCVFLFKLWQRKKREEQHARLLKLFEEDDELEVELGMRD 104

BLAST of CmoCh01G008780 vs. TAIR10
Match: AT1G09645.1 (AT1G09645.1 unknown protein)

HSP 1 Score: 84.0 bits (206), Expect = 6.2e-17
Identity = 50/99 (50.51%), Postives = 66/99 (66.67%), Query Frame = 1

Query: 8   ISLQVLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIA 67
           +S + L F  S+ L     L+GD  +   G KT+ H +  S  TG K++++ +G V    
Sbjct: 10  LSWRRLLFFASIGLQFFLGLSGDSKNTNAGVKTESHTS--SSKTGTKVILVLVGFVAVAM 69

Query: 68  FYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
           F   L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 70  FSFFLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 106

BLAST of CmoCh01G008780 vs. TAIR10
Match: AT1G57765.2 (AT1G57765.2 unknown protein)

HSP 1 Score: 78.2 bits (191), Expect = 3.4e-15
Identity = 49/93 (52.69%), Postives = 62/93 (66.67%), Query Frame = 1

Query: 15  FLLSLSLHSL-SVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILF 74
           FL  L L S+   ++GD +S+  G K + H +  S  TG K++ I LG          L+
Sbjct: 27  FLAMLYLDSVYQCISGDPNSSSTGAKAESHTS--SSKTGTKVIFILLGFGAVAGLSFFLY 86

Query: 75  KLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
           KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 87  KLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117

BLAST of CmoCh01G008780 vs. TAIR10
Match: AT3G53490.1 (AT3G53490.1 unknown protein)

HSP 1 Score: 53.1 bits (126), Expect = 1.2e-07
Identity = 29/73 (39.73%), Postives = 45/73 (61.64%), Query Frame = 1

Query: 33  SAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFYVILFKLWQKKKREEQHARLLKLFE 92
           S K+  T+K +       GI +LI+ L +       ++ +K W+KKKR+++ AR LKLFE
Sbjct: 151 SNKESGTEKEEQKGGMHPGIVVLIVVLLLGVVAVGLLVGYKYWRKKKRQQEQARFLKLFE 210

Query: 93  DDDELEVELGLRD 106
           D D++E ELGL +
Sbjct: 211 DGDDIEDELGLEN 223

BLAST of CmoCh01G008780 vs. NCBI nr
Match: gi|659119434|ref|XP_008459655.1| (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 85/107 (79.44%), Postives = 92/107 (85.98%), Query Frame = 1

Query: 1   MSRSRSSISLQVLSFLLS-LSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIIC 60
           MS S+SS SLQ L FL + + LHSLSVLA D+SSAKDG KTKK D  +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 61  LGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
           LGVVT IAF VILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CmoCh01G008780 vs. NCBI nr
Match: gi|449447605|ref|XP_004141558.1| (PREDICTED: uncharacterized protein LOC101207831 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.7e-30
Identity = 83/107 (77.57%), Postives = 90/107 (84.11%), Query Frame = 1

Query: 1   MSRSRSSISLQVLSFLLSLSL-HSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIIC 60
           MS S+SS SLQ L F+ S    HSLSVLA ++SSAKDG KTKK DA +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 61  LGVVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
           LGVVT I F VILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of CmoCh01G008780 vs. NCBI nr
Match: gi|743863056|ref|XP_011031540.1| (PREDICTED: uncharacterized protein LOC105130650 [Populus euphratica])

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-20
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 1

Query: 9   SLQV-LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF 68
           SLQ+ + F LS+SLH LS LA D ++ KD  T K +     S GIK++I CL VV  I F
Sbjct: 9   SLQIFVIFFLSISLHLLSGLASDPANPKD--TNKPERHSKSSVGIKVVIACLSVVAIIGF 68

Query: 69  YVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            ++LFK+WQKKKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 69  TMLLFKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 104

BLAST of CmoCh01G008780 vs. NCBI nr
Match: gi|224145111|ref|XP_002325530.1| (hypothetical protein POPTR_0019s10570g [Populus trichocarpa])

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-20
Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 1

Query: 9   SLQV-LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAF 68
           SLQ+ + F LS+SLH LS LA D ++ KD  T K  +    S GIK++I CL VV  I F
Sbjct: 9   SLQIFVIFFLSISLHLLSGLASDPANPKD--TNKPASHSKSSVGIKVVIACLSVVAIIGF 68

Query: 69  YVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            ++L K+WQKKKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 69  TMLLIKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 104

BLAST of CmoCh01G008780 vs. NCBI nr
Match: gi|734306151|gb|KHM98844.1| (hypothetical protein glysoja_022254 [Glycine soja])

HSP 1 Score: 102.8 bits (255), Expect = 3.7e-19
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 1

Query: 5   RSSISLQVLSFLLSLSLHSLSVLAGDHSSAK-DGKTKKHDAPKSPSTGIKMLIICLGVVT 64
           R S+   +L  L SL L  LS L  + S AK + K   H A +S S G+K++II LGVVT
Sbjct: 5   RRSLQYPLLLALTSLHLQHLSGLDNNPSGAKNENKDVNHHASRS-SVGLKIIIIFLGVVT 64

Query: 65  FIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 106
            IAF V LFKLWQ+KKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 65  VIAFCVFLFKLWQRKKREEQHARLLKLFEDDDELEVELGMRD 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KXZ0_CUCSA1.9e-3077.57Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650624 PE=4 SV=1[more]
B9IQD2_POPTR6.7e-2062.24Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s10570g PE=4 SV=1[more]
A0A0B2NP95_GLYSO2.5e-1962.75Uncharacterized protein OS=Glycine soja GN=glysoja_022254 PE=4 SV=1[more]
I1KW74_SOYBN2.5e-1962.75Uncharacterized protein OS=Glycine max GN=GLYMA_08G237900 PE=4 SV=1[more]
A0A0L9VHC3_PHAAN1.7e-1859.80Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g275300 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G09645.16.2e-1750.51 unknown protein[more]
AT1G57765.23.4e-1552.69 unknown protein[more]
AT3G53490.11.2e-0739.73 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659119434|ref|XP_008459655.1|1.1e-3179.44PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo][more]
gi|449447605|ref|XP_004141558.1|2.7e-3077.57PREDICTED: uncharacterized protein LOC101207831 [Cucumis sativus][more]
gi|743863056|ref|XP_011031540.1|1.1e-2063.27PREDICTED: uncharacterized protein LOC105130650 [Populus euphratica][more]
gi|224145111|ref|XP_002325530.1|9.6e-2062.24hypothetical protein POPTR_0019s10570g [Populus trichocarpa][more]
gi|734306151|gb|KHM98844.1|3.7e-1962.75hypothetical protein glysoja_022254 [Glycine soja][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh01G008780.1CmoCh01G008780.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33780FAMILY NOT NAMEDcoord: 1..105
score: 3.0