Carg21724 (gene) Silver-seed gourd

NameCarg21724
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_132 : 451439 .. 453285 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATCCCGCCTGAAAAACAAACACAAGGAAACTGCGGGAGTGAGGGATTGTCCTCCTCACTGACCCCGACGTTAGGTGAATCAGTCACGATAGAGGGAATTTGTGGGATTGAGATTGATATTCCAATTTTTCTTCTTCGAACGTATTGATTTGACCCCATAAGCAAGACCGCCACCCCATAGCATGTTGCCACCAGAAACAAAACCTCACCAGCTGAAGGAAGGATCTTTGGCATAAAGATACGACCAATCCTGAAAGACCACTCTTTCAATCATCTCGTACATGCATTCTAATTTGATGATATCCATATTTCACAACAACTATAAATTGACATGAACCATGCAATTCATCAACCATATTGTCTAGCCTAGGAATAGGATGTCGATACTTCACAGTAATTTTATTGATGGCTCTACAATCCACGCACATGCGCCAAGTTTCATCTTTCTTTGACACTAATAGGACTCGTATGGAACATGGATTCAAACTTACTCATATATAGCCCTTCTCCAGGAGCTCCTCAACTTGCATTTGAATTTCTTTAGTCTAAGTTGAATTGACTCTGTATGTTGGCTTGTTTGAAATGAGGGCCCTTCGAATCAAATCTATTTTATGTTCAATACCTCTTAAACTATTTTATGTTGATTATTAAGATTATGTTATGGTTTGTAAACGTTCATAGACTCGTAAAATTTAAATATTTTATTTTAGTTTTTGGATTTAAAAGGGTATATTTTAATTATTAATCTTTTCCATAATTCTAAAATATTAAACGCCATTATAAATATAGTTTTGGGTGTTAAATCAAGTTAGCAGCCGTTGCCGCTGCATTAAAGTCCCTCAAATCTCCATTGGAAAAAAATAAAAATAAAAAACCAGCTAAAATTCCGCCATTTTCGACCCTTCCCAATTTCCTTCTCAAGAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAATTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGGTACAAATCCACCTTTTCGCTTTTCAAATTCTAAATTCGGTTTTATGTTCTTTGTAACTCTGGTAGCTAGACCGAGTTGAATTTCTTAAATAATTGTAGCTATGATGATTTCTTGTTGCTTTTCTGCTGAAAATATTGTCGCATTGTTTTTTTATTGTAGATTTTAGGGTAACGTTGTTCTGTTCCGTAATGGTTTGGGGAATTACCGTTCTTAGGATTCATGGCATTTTAATTGTAATAAGCAAAATGAATGGTGGAATAGATGATTCGATATTTTGATTGCAATTTCTTGAAAATTACTACAATTTCACGAATTCCCTGTTTACCTTTTTCCTCCCTTTTTGCCGCTTGCTGTATATTTGTGTTTCTTGAGGAGGCATTTGAAATTGTGATGATTTAATTTCTTACGTTTTTGACTTGTGTGAAAATGAAAAACAAGATGAATGTAATTGAATTTGAATGTGTCTTATAATTTAGACCGCGAGTTGTAGTTGGATGGACAAATGATTGTTTGGTTATGGTTTTGGTTTTGTTCTTCTTGTCATTCCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTCTGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

mRNA sequence

ATGGGCATCCCGCCTGAAAAACAAACACAAGGAAACTGCGGGAGTGAGGGATTGTCCTCCTCACTGACCCCGACGTTAGGTGAATCAGTCACGATAGAGGGAATTTGTGGGATTGAGATTGATATTCCAATTTTTCTTCTTCGAACAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAATTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTCTGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

Coding sequence (CDS)

ATGGGCATCCCGCCTGAAAAACAAACACAAGGAAACTGCGGGAGTGAGGGATTGTCCTCCTCACTGACCCCGACGTTAGGTGAATCAGTCACGATAGAGGGAATTTGTGGGATTGAGATTGATATTCCAATTTTTCTTCTTCGAACAAATTCCGACCAAATCATCCTCCTCGAGAAAGCTGCAGAGATCGGCGAAGGGATGTCTCGATCTCGAAGCTCCATATCTCTGCAATTCCTCTCTTTCCTTCTCTCCCTCTCTCTCCATTCTCTTTCAGTGTTGGCAGGTGATCATTCAAGTGCTAAAGATGGTAAAACTAAAAAGCACGATGCTCCGAAGAGTCCATCAACAGGGATCAAGATGCTAATCATATGTCTAGGTGTGGTGACTTTCATTGCGTTCTCTGTGATTCTATTCAAATTATGGCAAAAGAAGAAGAGAGAAGAACAGCATGCCCGTCTTCTCAAGCTGTTTGAAGATGACGATGAACTCGAAGTCGAACTTGGCCTTCGGGATTGA

Protein sequence

MGIPPEKQTQGNCGSEGLSSSLTPTLGESVTIEGICGIEIDIPIFLLRTNSDQIILLEKAAEIGEGMSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
BLAST of Carg21724 vs. NCBI nr
Match: XP_023525282.1 (uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 193.4 bits (490), Expect = 6.5e-46
Identity = 104/105 (99.05%), Postives = 104/105 (99.05%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLG 126
           MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKK DAPKSPSTGIKMLIICLG
Sbjct: 1   MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKPDAPKSPSTGIKMLIICLG 60

Query: 127 VVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           VVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  VVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 105

BLAST of Carg21724 vs. NCBI nr
Match: XP_022949107.1 (uncharacterized protein LOC111452561 [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 103/105 (98.10%), Postives = 103/105 (98.10%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLG 126
           MSRSRSSISLQ LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLG
Sbjct: 1   MSRSRSSISLQVLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLG 60

Query: 127 VVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           VVTFIAF VILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  VVTFIAFYVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 105

BLAST of Carg21724 vs. NCBI nr
Match: XP_023535180.1 (uncharacterized protein LOC111796683 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-33
Identity = 85/107 (79.44%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIIC 126
           MSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIKM++IC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAEQGDGKAKKGDGWRSRSMGIKMVLIC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LGVVT IAFSVIL K+WQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of Carg21724 vs. NCBI nr
Match: XP_008459655.1 (PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo])

HSP 1 Score: 151.0 bits (380), Expect = 3.7e-33
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIIC 126
           MS S+SS SLQFL FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Carg21724 vs. NCBI nr
Match: XP_022925369.1 (uncharacterized protein LOC111432678 [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 8.3e-33
Identity = 84/107 (78.50%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK--DGKTKKHDAPKSPSTGIKMLIIC 126
           MSRS+SS SLQFLSFL SLSLHSLSVLA +HSSA+  DGK KK D  +S S GIK+++IC
Sbjct: 1   MSRSQSSRSLQFLSFLFSLSLHSLSVLADEHSSAENGDGKAKKGDGWRSRSMGIKIVLIC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LGVVT IAFSVIL K+WQ+KKREEQHARLLKLFEDDDELE+ELGLRD
Sbjct: 61  LGVVTVIAFSVILCKIWQRKKREEQHARLLKLFEDDDELELELGLRD 107

BLAST of Carg21724 vs. TAIR10
Match: AT1G09645.1 (unknown protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 51/99 (51.52%), Postives = 67/99 (67.68%), Query Frame = 0

Query: 74  ISLQFLSFLLSLSLHSLSVLAGDHSSAKDG-KTKKHDAPKSPSTGIKMLIICLGVVTFIA 133
           +S + L F  S+ L     L+GD  +   G KT+ H +  S  TG K++++ +G V    
Sbjct: 10  LSWRRLLFFASIGLQFFLGLSGDSKNTNAGVKTESHTS--SSKTGTKVILVLVGFVAVAM 69

Query: 134 FSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           FS  L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 70  FSFFLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 106

BLAST of Carg21724 vs. TAIR10
Match: AT1G57765.2 (unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-16
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 0

Query: 72  SSISLQFLSFLLSLSLHSL-SVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLGVVTF 131
           +SI L F  FL  L L S+   ++GD +S+  G  K      S  TG K++ I LG    
Sbjct: 20  ASICLHF--FLAMLYLDSVYQCISGDPNSSSTG-AKAESHTSSSKTGTKVIFILLGFGAV 79

Query: 132 IAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
              S  L+KLWQKKKR+EQ+ARLLKLFE+DDELEVELGLRD
Sbjct: 80  AGLSFFLYKLWQKKKRDEQYARLLKLFEEDDELEVELGLRD 117

BLAST of Carg21724 vs. TrEMBL
Match: tr|A0A1S3CA76|A0A1S3CA76_CUCME (uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.5e-33
Identity = 87/107 (81.31%), Postives = 94/107 (87.85%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIIC 126
           MS S+SS SLQFL FL + + LHSLSVLA D+SSAKD GKTKK D  +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFLFNFIFLHSLSVLANDNSSAKDGGKTKKDDVRRSPSMGIKILIIC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LGVVT IAFSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIAFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Carg21724 vs. TrEMBL
Match: tr|A0A0A0KXZ0|A0A0A0KXZ0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 6.0e-32
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLS-LSLHSLSVLAGDHSSAKD-GKTKKHDAPKSPSTGIKMLIIC 126
           MS S+SS SLQFL F+ S +  HSLSVLA ++SSAKD GKTKK DA +SPS GIK+LIIC
Sbjct: 1   MSGSQSSRSLQFLFFIFSFIFSHSLSVLAKENSSAKDGGKTKKDDARRSPSMGIKILIIC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LGVVT I FSVILFK+WQKKKREEQHARLLKLFEDDDELEVELGLRD
Sbjct: 61  LGVVTVIIFSVILFKIWQKKKREEQHARLLKLFEDDDELEVELGLRD 107

BLAST of Carg21724 vs. TrEMBL
Match: tr|A0A2I4HEH5|A0A2I4HEH5_9ROSI (uncharacterized protein LOC109016631 OS=Juglans regia OX=51240 GN=LOC109016631 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.3e-21
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAK-DGKTKKHDAPKSPSTGIKMLIICL 126
           MSR     SLQF   L S+ L  +S LA D  S K D KT  H +  S S G+K+ I+CL
Sbjct: 1   MSRFPIPRSLQFPLLLCSIHLQFISGLASDPLSTKNDNKTMSHGS-SSGSIGLKVAIVCL 60

Query: 127 GVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           G+V  + FSV+LFK+WQKKKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 61  GLVAVVGFSVLLFKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 105

BLAST of Carg21724 vs. TrEMBL
Match: tr|A0A2N9H5A4|A0A2N9H5A4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37518 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 0

Query: 67  MSRSRSSISLQFLSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIICLG 126
           M+R  S  SLQF      +SL  ++  A D SS+K           S S G+K++I+CLG
Sbjct: 1   MTRFPSLRSLQFQLLFYLISLQFITGFANDSSSSKSENNVGSHGASSSSVGVKVVIVCLG 60

Query: 127 VVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           +V  +AF+V+LFK+WQKKKREEQHARLLKLFEDDDELEVELG+RD
Sbjct: 61  LVAVVAFAVLLFKIWQKKKREEQHARLLKLFEDDDELEVELGIRD 105

BLAST of Carg21724 vs. TrEMBL
Match: tr|A0A2I4GB57|A0A2I4GB57_9ROSI (uncharacterized protein LOC109006337 OS=Juglans regia OX=51240 GN=LOC109006337 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.4e-20
Identity = 60/107 (56.07%), Postives = 77/107 (71.96%), Query Frame = 0

Query: 67  MSRSRSSISLQF--LSFLLSLSLHSLSVLAGDHSSAKDGKTKKHDAPKSPSTGIKMLIIC 126
           MSR+    SLQF  L FL  + LH +  LA D SS K+          S S G+K++I+C
Sbjct: 1   MSRTSIPRSLQFPLLLFLSLIHLHFIPGLANDPSSTKNENKAASHGASSGSVGLKVVIVC 60

Query: 127 LGVVTFIAFSVILFKLWQKKKREEQHARLLKLFEDDDELEVELGLRD 172
           LG+V F+ F+V++FK+W+KKKREEQHARLLKLFEDDDEL+VELG+RD
Sbjct: 61  LGLVVFVGFAVLVFKIWKKKKREEQHARLLKLFEDDDELDVELGIRD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023525282.16.5e-4699.05uncharacterized protein LOC111788931 [Cucurbita pepo subsp. pepo][more]
XP_022949107.11.5e-4598.10uncharacterized protein LOC111452561 [Cucurbita moschata][more]
XP_023535180.12.8e-3379.44uncharacterized protein LOC111796683 [Cucurbita pepo subsp. pepo][more]
XP_008459655.13.7e-3381.31PREDICTED: uncharacterized protein LOC103498710 [Cucumis melo][more]
XP_022925369.18.3e-3378.50uncharacterized protein LOC111432678 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
AT1G09645.11.2e-1751.52unknown protein[more]
AT1G57765.23.8e-1652.48unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CA76|A0A1S3CA76_CUCME2.5e-3381.31uncharacterized protein LOC103498710 OS=Cucumis melo OX=3656 GN=LOC103498710 PE=... [more]
tr|A0A0A0KXZ0|A0A0A0KXZ0_CUCSA6.0e-3279.44Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G650624 PE=4 SV=1[more]
tr|A0A2I4HEH5|A0A2I4HEH5_9ROSI6.3e-2161.32uncharacterized protein LOC109016631 OS=Juglans regia OX=51240 GN=LOC109016631 P... [more]
tr|A0A2N9H5A4|A0A2N9H5A4_FAGSY1.4e-2056.19Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37518 PE=4 SV=1[more]
tr|A0A2I4GB57|A0A2I4GB57_9ROSI1.4e-2056.07uncharacterized protein LOC109006337 OS=Juglans regia OX=51240 GN=LOC109006337 P... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg21724-RACarg21724-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availablePANTHERPTHR33780FAMILY NOT NAMEDcoord: 70..171
NoneNo IPR availablePANTHERPTHR33780:SF1SUBFAMILY NOT NAMEDcoord: 70..171