CmaCh20G007710 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G007710
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr20 : 3652957 .. 3653244 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

mRNA sequence

ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Coding sequence (CDS)

ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Protein sequence

MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILLVLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRGAW
Homology
[Close]
BLAST of CmaCh20G007710 vs. TrEMBL
Match: A0A0A0LJB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1 

Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+S+DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]
BLAST of CmaCh20G007710 vs. TrEMBL
Match: V7AQD7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 27/64 (42.19%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSSVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLSSVD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]
BLAST of CmaCh20G007710 vs. TrEMBL
Match: W9QR27_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 1 

Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSSVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLSSV+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

[Close]
BLAST of CmaCh20G007710 vs. TrEMBL
Match: V4UC16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029987mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQI---NWPLLAVPIILLVLVRCLSSVD 73
          PLP PVLL++AV  IL+G+SS      I  S  Q    NW L + P++L+ LVRCLSS D
Sbjct: 15 PLPYPVLLIIAVALILLGISSYINYVSIVESAGQRLNKNWILFSTPVLLIFLVRCLSSWD 74

Query: 74 SSSRYYACP 80
          S+ R+ A P
Sbjct: 75 SADRFCASP 83

[Close]
BLAST of CmaCh20G007710 vs. TrEMBL
Match: W9QNH7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.5e-06
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 14  PLPGPVLLLLAVVFILIGLSSLFP-SEPIDFSEFQINWPLLAVPIILLVLVRCLSSV-DS 73
           PLP PVLL++AV FI +G    F   E ++ +E QINW L  VPI+L+++VR LSS+ DS
Sbjct: 20  PLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVVPILLILIVRWLSSMEDS 79

Query: 74  SSRYYACPCNRGWKMQCRCGRGA 95
            S +   P  R  +   R   G+
Sbjct: 80  DSLFGMSPWERRRRTHHRPSEGS 102

[Close]
BLAST of CmaCh20G007710 vs. TAIR10
Match: AT2G21185.1 (AT2G21185.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1 

Query: 4  CYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLLA-VPIILLV 63
          C  C+   S   P PV++++ V  +L+ LSS+   E  +   E  ++W LLA VP+ LL 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLSSVDSSSR-YYACPCNRGWKMQC 89
           VRCLS +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]
BLAST of CmaCh20G007710 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.6e-06
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPS--EPIDFSEFQINWPLLAVPIILLVLVRCLSSVDS 72
          PLP PVLL+LAV  + + LSS + S  E  + +E QIN+ LL +P+ L+VLVR LSS+++
Sbjct: 18 PLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

[Close]
BLAST of CmaCh20G007710 vs. NCBI nr
Match: gi|659115618|ref|XP_008457646.1| (PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCLSS+DSS RYYACPCNRGWKM CRCG G AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]
BLAST of CmaCh20G007710 vs. NCBI nr
Match: gi|700206774|gb|KGN61893.1| (hypothetical protein Csa_2G263880 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.1e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1 

Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+S+DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]
BLAST of CmaCh20G007710 vs. NCBI nr
Match: gi|729405837|ref|XP_010555245.1| (PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-08
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 4  CYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLL-AVPIILLV 63
          C GC+P AS   P PV +++AV  +L+GLSS+   E  +  +E +++W LL AVP++LL+
Sbjct: 9  CRGCRPAAS---PVPVAVMIAVALVLLGLSSVVKFEVEVATAEERLSWILLAAVPVVLLL 68

Query: 64 LVRCLSSVDS-SSRYYACPCNRGWKMQC 89
           VR LS  DS    +Y CPC R WK  C
Sbjct: 69 AVRWLSYRDSCKPSFYLCPCGR-WKCGC 92

[Close]
BLAST of CmaCh20G007710 vs. NCBI nr
Match: gi|593267411|ref|XP_007135883.1| (hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 27/64 (42.19%), Postives = 47/64 (73.44%), Query Frame = 1 

Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSSVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLSSVD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]
BLAST of CmaCh20G007710 vs. NCBI nr
Match: gi|703070019|ref|XP_010088669.1| (hypothetical protein L484_003221 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 1 

Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSSVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLSSV+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

The following BLAST results are available for this feature:
BLAST of CmaCh20G007710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G007710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJB6_CUCSA3.5e-4489.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1[more]
V7AQD7_PHAVU2.9e-0642.19Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1[more]
W9QR27_9ROSA2.9e-0641.84Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1[more]
V4UC16_9ROSI5.0e-0649.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029987mg PE=4 SV=1[more]
W9QNH7_9ROSA8.5e-0643.37Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1[more]
BLAST of CmaCh20G007710 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G21185.12.8e-0839.77 unknown protein[more]
AT2G21180.17.6e-0650.00 unknown protein[more]
BLAST of CmaCh20G007710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115618|ref|XP_008457646.1|2.3e-4490.63PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo][more]
gi|700206774|gb|KGN61893.1|5.1e-4489.58hypothetical protein Csa_2G263880 [Cucumis sativus][more]
gi|729405837|ref|XP_010555245.1|4.5e-0845.45PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana][more]
gi|593267411|ref|XP_007135883.1|4.2e-0642.19hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris][more]
gi|703070019|ref|XP_010088669.1|4.2e-0641.84hypothetical protein L484_003221 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G007710.1CmaCh20G007710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh20G007710Cucsa.169260Cucumber (Gy14) v1cgycmaB0479
CmaCh20G007710Cla001666Watermelon (97103) v1cmawmB530
CmaCh20G007710Csa2G263880Cucumber (Chinese Long) v2cmacuB542
CmaCh20G007710ClCG02G011410Watermelon (Charleston Gray)cmawcgB488
CmaCh20G007710CSPI02G13110Wild cucumber (PI 183967)cmacpiB547
CmaCh20G007710CmoCh02G003280Cucurbita moschata (Rifu)cmacmoB554
CmaCh20G007710CmoCh20G007720Cucurbita moschata (Rifu)cmacmoB551
CmaCh20G007710Cp4.1LG16g02840Cucurbita pepo (Zucchini)cmacpeB565
CmaCh20G007710MELO3C034723.2Melon (DHL92) v3.6.1cmamedB570
CmaCh20G007710CsaV3_2G015670Cucumber (Chinese Long) v3cmacucB0651
CmaCh20G007710Cla97C02G037120Watermelon (97103) v2cmawmbB576
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh20G007710CmaCh02G003310Cucurbita maxima (Rimu)cmacmaB469
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G007710Cucurbita pepo (Zucchini)cmacpeB557
CmaCh20G007710Cucurbita pepo (Zucchini)cmacpeB560
CmaCh20G007710Cucurbita pepo (Zucchini)cmacpeB570
CmaCh20G007710Cucurbita pepo (Zucchini)cmacpeB575
CmaCh20G007710Cucurbita pepo (Zucchini)cmacpeB585
CmaCh20G007710Bottle gourd (USVL1VR-Ls)cmalsiB507
CmaCh20G007710Bottle gourd (USVL1VR-Ls)cmalsiB514
CmaCh20G007710Cucumber (Gy14) v2cgybcmaB218
CmaCh20G007710Cucumber (Gy14) v2cgybcmaB807
CmaCh20G007710Cucumber (Gy14) v2cgybcmaB956
CmaCh20G007710Melon (DHL92) v3.6.1cmamedB587
CmaCh20G007710Silver-seed gourdcarcmaB0188
CmaCh20G007710Silver-seed gourdcarcmaB0441
CmaCh20G007710Silver-seed gourdcarcmaB0486
CmaCh20G007710Silver-seed gourdcarcmaB1185
CmaCh20G007710Cucumber (Chinese Long) v3cmacucB0687
CmaCh20G007710Watermelon (97103) v2cmawmbB570
CmaCh20G007710Wax gourdcmawgoB0677
CmaCh20G007710Wax gourdcmawgoB0684
CmaCh20G007710Cucurbita maxima (Rimu)cmacmaB155
CmaCh20G007710Cucurbita maxima (Rimu)cmacmaB444
CmaCh20G007710Cucumber (Gy14) v1cgycmaB1052
CmaCh20G007710Cucurbita moschata (Rifu)cmacmoB542
CmaCh20G007710Cucurbita moschata (Rifu)cmacmoB548
CmaCh20G007710Wild cucumber (PI 183967)cmacpiB580
CmaCh20G007710Cucumber (Chinese Long) v2cmacuB573
CmaCh20G007710Melon (DHL92) v3.5.1cmameB490
CmaCh20G007710Melon (DHL92) v3.5.1cmameB510
CmaCh20G007710Watermelon (Charleston Gray)cmawcgB483
CmaCh20G007710Watermelon (Charleston Gray)cmawcgB490
CmaCh20G007710Watermelon (97103) v1cmawmB526
CmaCh20G007710Watermelon (97103) v1cmawmB534