CmaCh20G007710.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G007710.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr20 : 3652957 .. 3653244 (-)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

mRNA sequence

ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Coding sequence (CDS)

ATGACTTATTGCTATGGCTGTAAACCTCGCGCTTCCGGTCCACTCCCTGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTCGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGTCTGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Protein sequence

MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILLVLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRGAW

Homology

[Close]

BLAST of CmaCh20G007710.1 vs. TrEMBL
Match: A0A0A0LJB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.5e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+S+DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CmaCh20G007710.1 vs. TrEMBL
Match: V7AQD7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 27/64 (42.19%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSSVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLSSVD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]

BLAST of CmaCh20G007710.1 vs. TrEMBL
Match: W9QR27_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.9e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSSVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLSSV+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

[Close]

BLAST of CmaCh20G007710.1 vs. TrEMBL
Match: V4UC16_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029987mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.0e-06
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQI---NWPLLAVPIILLVLVRCLSSVD 73
          PLP PVLL++AV  IL+G+SS      I  S  Q    NW L + P++L+ LVRCLSS D
Sbjct: 15 PLPYPVLLIIAVALILLGISSYINYVSIVESAGQRLNKNWILFSTPVLLIFLVRCLSSWD 74

Query: 74 SSSRYYACP 80
          S+ R+ A P
Sbjct: 75 SADRFCASP 83

[Close]

BLAST of CmaCh20G007710.1 vs. TrEMBL
Match: W9QNH7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.5e-06
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 1


Query: 14  PLPGPVLLLLAVVFILIGLSSLFP-SEPIDFSEFQINWPLLAVPIILLVLVRCLSSV-DS 73
           PLP PVLL++AV FI +G    F   E ++ +E QINW L  VPI+L+++VR LSS+ DS
Sbjct: 20  PLPYPVLLIMAVTFIFLGTKWYFSFEEVVESAEEQINWVLFVVPILLILIVRWLSSMEDS 79

Query: 74  SSRYYACPCNRGWKMQCRCGRGA 95
            S +   P  R  +   R   G+
Sbjct: 80  DSLFGMSPWERRRRTHHRPSEGS 102

[Close]

BLAST of CmaCh20G007710.1 vs. TAIR10
Match: AT2G21185.1 (AT2G21185.1 unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 4  CYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLLA-VPIILLV 63
          C  C+   S   P PV++++ V  +L+ LSS+   E  +   E  ++W LLA VP+ LL 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLSSVDSSSR-YYACPCNRGWKMQC 89
           VRCLS +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]

BLAST of CmaCh20G007710.1 vs. TAIR10
Match: AT2G21180.1 (AT2G21180.1 unknown protein)

HSP 1 Score: 47.0 bits (110), Expect = 7.6e-06
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPS--EPIDFSEFQINWPLLAVPIILLVLVRCLSSVDS 72
          PLP PVLL+LAV  + + LSS + S  E  + +E QIN+ LL +P+ L+VLVR LSS+++
Sbjct: 18 PLPYPVLLILAVASVFL-LSSWYFSLEEAAESAEEQINFALLLIPLFLIVLVRWLSSMEN 76

[Close]

BLAST of CmaCh20G007710.1 vs. NCBI nr
Match: gi|659115618|ref|XP_008457646.1| (PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo])

HSP 1 Score: 186.4 bits (472), Expect = 2.3e-44
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 1


Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCLSS+DSS RYYACPCNRGWKM CRCG G AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CmaCh20G007710.1 vs. NCBI nr
Match: gi|700206774|gb|KGN61893.1| (hypothetical protein Csa_2G263880 [Cucumis sativus])

HSP 1 Score: 185.3 bits (469), Expect = 5.1e-44
Identity = 86/96 (89.58%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPR SGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSSVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+S+DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CmaCh20G007710.1 vs. NCBI nr
Match: gi|729405837|ref|XP_010555245.1| (PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana])

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-08
Identity = 40/88 (45.45%), Postives = 56/88 (63.64%), Query Frame = 1


Query: 4  CYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLL-AVPIILLV 63
          C GC+P AS   P PV +++AV  +L+GLSS+   E  +  +E +++W LL AVP++LL+
Sbjct: 9  CRGCRPAAS---PVPVAVMIAVALVLLGLSSVVKFEVEVATAEERLSWILLAAVPVVLLL 68

Query: 64 LVRCLSSVDS-SSRYYACPCNRGWKMQC 89
           VR LS  DS    +Y CPC R WK  C
Sbjct: 69 AVRWLSYRDSCKPSFYLCPCGR-WKCGC 92

[Close]

BLAST of CmaCh20G007710.1 vs. NCBI nr
Match: gi|593267411|ref|XP_007135883.1| (hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 27/64 (42.19%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSSVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLSSVD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]

BLAST of CmaCh20G007710.1 vs. NCBI nr
Match: gi|703070019|ref|XP_010088669.1| (hypothetical protein L484_003221 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-06
Identity = 41/98 (41.84%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 1  MTYCYGCKPRASGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSSVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLSSV+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

The following BLAST results are available for this feature:

BLAST of CmaCh20G007710.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G007710.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6_CUCSA	3.5e-44	89.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1	[more]
V7AQD7_PHAVU	2.9e-06	42.19	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1	[more]
W9QR27_9ROSA	2.9e-06	41.84	Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1	[more]
V4UC16_9ROSI	5.0e-06	49.28	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029987mg PE=4 SV=1	[more]
W9QNH7_9ROSA	8.5e-06	43.37	Uncharacterized protein OS=Morus notabilis GN=L484_003219 PE=4 SV=1	[more]

BLAST of CmaCh20G007710.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21185.1	2.8e-08	39.77	unknown protein	[more]
AT2G21180.1	7.6e-06	50.00	unknown protein	[more]

BLAST of CmaCh20G007710.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115618\|ref\|XP_008457646.1\|	2.3e-44	90.63	PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo]	[more]
gi\|700206774\|gb\|KGN61893.1\|	5.1e-44	89.58	hypothetical protein Csa_2G263880 [Cucumis sativus]	[more]
gi\|729405837\|ref\|XP_010555245.1\|	4.5e-08	45.45	PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana]	[more]
gi\|593267411\|ref\|XP_007135883.1\|	4.2e-06	42.19	hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris]	[more]
gi\|703070019\|ref\|XP_010088669.1\|	4.2e-06	41.84	hypothetical protein L484_003221 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G007710	CmaCh20G007710	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G007710.1	CmaCh20G007710.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G007710.1.CDS.1	CmaCh20G007710.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G007710.1.exon.1	CmaCh20G007710.1.exon.1	exon