CmoCh20G007720 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh20G007720
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr20 : 3870143 .. 3870430 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGACCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

mRNA sequence

ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGACCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Coding sequence (CDS)

ATGACTTATTGCTATGGCTGTAAACCTCGCCCTTCCGGTCCACTCCCCGGACCTGTCCTTCTGCTTCTCGCCGTAGTCTTCATCTTGATCGGATTGTCCTCTCTGTTCCCCTCCGAACCAATCGATTTCTCGGAATTCCAAATCAATTGGCCTCTTCTTGCCGTTCCGATTATTTTACTCGTTCTTGTTCGCTGTTTGTCGACCGTGGATTCTTCATCCAGGTACTATGCCTGCCCTTGCAATCGCGGCTGGAAGATGCAGTGTCGGTGCGGCCGTGGCGCGTGGTAA

Homology

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BLAST of CmoCh20G007720 vs. TrEMBL
Match: A0A0A0LJB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 9.3e-45
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+++DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CmoCh20G007720 vs. TrEMBL
Match: V7AQD7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-06
Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSTVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLS+VD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]

BLAST of CmoCh20G007720 vs. TrEMBL
Match: W9QR27_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-06
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSTVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLS+V+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

[Close]

BLAST of CmoCh20G007720 vs. TrEMBL
Match: A0A0J8BJ41_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g214670 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.5e-06
Identity = 43/103 (41.75%), Postives = 52/103 (50.49%), Query Frame = 1


Query: 1   MTYC-YGCKPR--PS-------GPLPGPVLLLLAVVFILIGLSSLFPS-EPIDFSEFQIN 60
           M YC Y   PR  PS        PLP PVLL+L VV I +G+   F S E  + +EF IN
Sbjct: 1   MVYCDYHSYPRRDPSICDGLTLRPLPYPVLLILLVVSIFLGIKFYFVSDEAAETTEFHIN 60

Query: 61  WPLLAVPIILLVLVRCLSTVDSSSR--YYACPCNRGWKMQCRC 91
           W LL  PI+L+  VR LS+     R  Y  C   R   + C C
Sbjct: 61  WMLLLTPILLIFAVRLLSSFQGRRRRSYGGCTTERWPPVSCCC 103

[Close]

BLAST of CmoCh20G007720 vs. TAIR10
Match: AT2G21185.1 (AT2G21185.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.6e-08
Identity = 35/88 (39.77%), Postives = 51/88 (57.95%), Query Frame = 1


Query: 4  CYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLLA-VPIILLV 63
          C  C+   S   P PV++++ V  +L+ LSS+   E  +   E  ++W LLA VP+ LL 
Sbjct: 8  CGRCRVSTS---PLPVIVMITVALVLLALSSVVKFEVAVSSGEDVLSWLLLAAVPLALLF 67

Query: 64 LVRCLSTVDSSSR-YYACPCNRGWKMQC 89
           VRCLS +++S R  Y CPC R W+  C
Sbjct: 68 AVRCLSCLETSKRSTYYCPCGR-WRCVC 91

[Close]

BLAST of CmoCh20G007720 vs. NCBI nr
Match: gi|659115618|ref|XP_008457646.1| (PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo])

HSP 1 Score: 188.3 bits (477), Expect = 6.0e-45
Identity = 87/96 (90.62%), Postives = 91/96 (94.79%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCLS++DSS RYYACPCNRGWKM CRCG G AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

[Close]

BLAST of CmoCh20G007720 vs. NCBI nr
Match: gi|700206774|gb|KGN61893.1| (hypothetical protein Csa_2G263880 [Cucumis sativus])

HSP 1 Score: 187.2 bits (474), Expect = 1.3e-44
Identity = 86/96 (89.58%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          MTYCYGCKPRPSGPLPGP+LLLLAVVFILI LSSLFPSEPIDFSEFQINWPLLAVPII+L
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRCLSTVDSSSRYYACPCNRGWKMQCRCGRG-AW 96
          VLVRCL+++DSS RYYACPC+RGWKM CRCGRG AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]

BLAST of CmoCh20G007720 vs. NCBI nr
Match: gi|729405837|ref|XP_010555245.1| (PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana])

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-07
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = 1


Query: 4  CYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSE-PIDFSEFQINWPLL-AVPIILLV 63
          C GC+P  S   P PV +++AV  +L+GLSS+   E  +  +E +++W LL AVP++LL+
Sbjct: 9  CRGCRPAAS---PVPVAVMIAVALVLLGLSSVVKFEVEVATAEERLSWILLAAVPVVLLL 68

Query: 64 LVRCLSTVDS-SSRYYACPCNRGWKMQC 89
           VR LS  DS    +Y CPC R WK  C
Sbjct: 69 AVRWLSYRDSCKPSFYLCPCGR-WKCGC 92

[Close]

BLAST of CmoCh20G007720 vs. NCBI nr
Match: gi|593267411|ref|XP_007135883.1| (hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris])

HSP 1 Score: 58.2 bits (139), Expect = 9.3e-06
Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1


Query: 14 PLPGPVLLLLAVVFILIGLSSLFPSEPI-DFSEFQINWPLLAVPIILLVLVRCLSTVDSS 73
          P+P PVLL+L+++ + + +S  F  E + + +E Q+ W LLA P++L+++VRCLS+VD+S
Sbjct: 19 PVPYPVLLILSLILLFLAISWYFSYEEVLEAAEEQLGWMLLATPLVLILIVRCLSSVDTS 78

Query: 74 SRYY 77
            ++
Sbjct: 79 EWFF 82

[Close]

BLAST of CmoCh20G007720 vs. NCBI nr
Match: gi|703070019|ref|XP_010088669.1| (hypothetical protein L484_003221 [Morus notabilis])

HSP 1 Score: 58.2 bits (139), Expect = 9.3e-06
Identity = 40/98 (40.82%), Postives = 52/98 (53.06%), Query Frame = 1


Query: 1  MTYCYGCKPRPSGPLPGPVLLLLAVVFILIGLSSLFPSEPIDFSEFQINWPLLAVPIILL 60
          M YC  C+ R S P   PVLL L VV +L+ L ++    P       INWPLL VP++LL
Sbjct: 1  MGYC-ACRRRES-PQLYPVLLFLLVVALLMALPTIEVKTPT----LDINWPLLVVPLLLL 60

Query: 61 VLVRCLSTVDSSSRYYACP------CNRGWKMQCRCGR 93
           +V CLS+V+ S      P      C+   K  C+CGR
Sbjct: 61 AMVHCLSSVEPSRGPCPIPPPPPVWCHCRGKHACKCGR 92

The following BLAST results are available for this feature:

BLAST of CmoCh20G007720 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh20G007720 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB6_CUCSA	9.3e-45	89.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1	[more]
V7AQD7_PHAVU	6.5e-06	40.63	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G000200g PE=4 SV=1	[more]
W9QR27_9ROSA	6.5e-06	40.82	Uncharacterized protein OS=Morus notabilis GN=L484_003221 PE=4 SV=1	[more]
A0A0J8BJ41_BETVU	6.5e-06	41.75	Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g214670 PE=4 S...	[more]

BLAST of CmoCh20G007720 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21185.1	3.6e-08	39.77	unknown protein	[more]

BLAST of CmoCh20G007720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115618\|ref\|XP_008457646.1\|	6.0e-45	90.63	PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo]	[more]
gi\|700206774\|gb\|KGN61893.1\|	1.3e-44	89.58	hypothetical protein Csa_2G263880 [Cucumis sativus]	[more]
gi\|729405837\|ref\|XP_010555245.1\|	1.7e-07	44.32	PREDICTED: uncharacterized protein LOC104824781 [Tarenaya hassleriana]	[more]
gi\|593267411\|ref\|XP_007135883.1\|	9.3e-06	40.63	hypothetical protein PHAVU_009G000200g [Phaseolus vulgaris]	[more]
gi\|703070019\|ref\|XP_010088669.1\|	9.3e-06	40.82	hypothetical protein L484_003221 [Morus notabilis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh20G007720.1	CmoCh20G007720.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh20G007720	Cucsa.169260	Cucumber (Gy14) v1	cgycmoB0482
CmoCh20G007720	CmaCh20G007710	Cucurbita maxima (Rimu)	cmacmoB551
CmoCh20G007720	CmaCh02G003310	Cucurbita maxima (Rimu)	cmacmoB606
CmoCh20G007720	Cla001666	Watermelon (97103) v1	cmowmB518
CmoCh20G007720	Csa2G263880	Cucumber (Chinese Long) v2	cmocuB531
CmoCh20G007720	ClCG02G011410	Watermelon (Charleston Gray)	cmowcgB488
CmoCh20G007720	CSPI02G13110	Wild cucumber (PI 183967)	cmocpiB536
CmoCh20G007720	Cp4.1LG16g02840	Cucurbita pepo (Zucchini)	cmocpeB517
CmoCh20G007720	MELO3C034723.2	Melon (DHL92) v3.6.1	cmomedB559
CmoCh20G007720	CsaV3_2G015670	Cucumber (Chinese Long) v3	cmocucB0637
CmoCh20G007720	Cla97C02G037120	Watermelon (97103) v2	cmowmbB555

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh20G007720	CmoCh02G003280	Cucurbita moschata (Rifu)	cmocmoB404

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh20G007720	Wax gourd	cmowgoB0673
CmoCh20G007720	Wax gourd	cmowgoB0679
CmoCh20G007720	Cucumber (Gy14) v1	cgycmoB1051
CmoCh20G007720	Wild cucumber (PI 183967)	cmocpiB567
CmoCh20G007720	Cucumber (Chinese Long) v2	cmocuB561
CmoCh20G007720	Melon (DHL92) v3.5.1	cmomeB484
CmoCh20G007720	Melon (DHL92) v3.5.1	cmomeB503
CmoCh20G007720	Watermelon (Charleston Gray)	cmowcgB483
CmoCh20G007720	Watermelon (97103) v1	cmowmB514
CmoCh20G007720	Cucurbita pepo (Zucchini)	cmocpeB511
CmoCh20G007720	Cucurbita pepo (Zucchini)	cmocpeB513
CmoCh20G007720	Cucurbita pepo (Zucchini)	cmocpeB521
CmoCh20G007720	Cucurbita pepo (Zucchini)	cmocpeB525
CmoCh20G007720	Cucurbita pepo (Zucchini)	cmocpeB534
CmoCh20G007720	Bottle gourd (USVL1VR-Ls)	cmolsiB491
CmoCh20G007720	Cucumber (Gy14) v2	cgybcmoB209
CmoCh20G007720	Cucumber (Gy14) v2	cgybcmoB787
CmoCh20G007720	Cucumber (Gy14) v2	cgybcmoB939
CmoCh20G007720	Silver-seed gourd	carcmoB0435
CmoCh20G007720	Silver-seed gourd	carcmoB0473
CmoCh20G007720	Silver-seed gourd	carcmoB1153