CmoCh02G003280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G003280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 1687146 .. 1687427 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTACTGTTATGGTTATAAGCCTCGCCCTTCCGGTCCACTCCCCGGCCCTATCCTGGTGCTTCTCACCGTAGTCTTCATCTTGATCGGATTGTCCTCCTTGTTCTCCTCTGAACCTATCGACTTCTCCGAGTTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATCATTATACTCGTTCTCGTTCGCTTTTTGTCGTCCGTGGATTCTTCATCCAGGCACTGCGCTTGCGATCGCGGCTGGAAGATGCATTGTCGGTGCCGCCATGGCGCGTGGTAA

mRNA sequence

ATGACTTACTGTTATGGTTATAAGCCTCGCCCTTCCGGTCCACTCCCCGGCCCTATCCTGGTGCTTCTCACCGTAGTCTTCATCTTGATCGGATTGTCCTCCTTGTTCTCCTCTGAACCTATCGACTTCTCCGAGTTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATCATTATACTCGTTCTCGTTCGCTTTTTGTCGTCCGTGGATTCTTCATCCAGGCACTGCGCTTGCGATCGCGGCTGGAAGATGCATTGTCGGTGCCGCCATGGCGCGTGGTAA

Coding sequence (CDS)

ATGACTTACTGTTATGGTTATAAGCCTCGCCCTTCCGGTCCACTCCCCGGCCCTATCCTGGTGCTTCTCACCGTAGTCTTCATCTTGATCGGATTGTCCTCCTTGTTCTCCTCTGAACCTATCGACTTCTCCGAGTTTCAAATCAATTGGCCTCTTCTCGCTGTTCCGATCATTATACTCGTTCTCGTTCGCTTTTTGTCGTCCGTGGATTCTTCATCCAGGCACTGCGCTTGCGATCGCGGCTGGAAGATGCATTGTCGGTGCCGCCATGGCGCGTGGTAA
Homology
[Close]
BLAST of CmoCh02G003280 vs. TrEMBL
Match: A0A0A0LJB6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.0e-37
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 1 

Query: 1  MTYCYGYKPRPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KPRPSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHG-AW 94
          VLVR L+S+DSS R+  C CDRGWKMHCRC  G AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]
BLAST of CmoCh02G003280 vs. NCBI nr
Match: gi|700206774|gb|KGN61893.1| (hypothetical protein Csa_2G263880 [Cucumis sativus])

HSP 1 Score: 161.0 bits (406), Expect = 1.0e-36
Identity = 80/96 (83.33%), Postives = 84/96 (87.50%), Query Frame = 1 

Query: 1  MTYCYGYKPRPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KPRPSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHG-AW 94
          VLVR L+S+DSS R+  C CDRGWKMHCRC  G AW
Sbjct: 61 VLVRCLASMDSSPRYYACPCDRGWKMHCRCGRGSAW 96

[Close]
BLAST of CmoCh02G003280 vs. NCBI nr
Match: gi|659115618|ref|XP_008457646.1| (PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-36
Identity = 80/96 (83.33%), Postives = 85/96 (88.54%), Query Frame = 1 

Query: 1  MTYCYGYKPRPSGPLPGPILVLLTVVFILIGLSSLFSSEPIDFSEFQINWPLLAVPIIIL 60
          MTYCYG KPRPSGPLPGPIL+LL VVFILI LSSLF SEPIDFSEFQINWPLLAVPIIIL
Sbjct: 1  MTYCYGCKPRPSGPLPGPILLLLAVVFILIALSSLFPSEPIDFSEFQINWPLLAVPIIIL 60

Query: 61 VLVRFLSSVDSSSRH--CACDRGWKMHCRCRHG-AW 94
          VLVR LSS+DSS R+  C C+RGWKM+CRC HG AW
Sbjct: 61 VLVRCLSSMDSSPRYYACPCNRGWKMNCRCGHGSAW 96

The following BLAST results are available for this feature:
BLAST of CmoCh02G003280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJB6_CUCSA7.0e-3783.33Uncharacterized protein OS=Cucumis sativus GN=Csa_2G263880 PE=4 SV=1[more]
BLAST of CmoCh02G003280 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206774|gb|KGN61893.1|1.0e-3683.33hypothetical protein Csa_2G263880 [Cucumis sativus][more]
gi|659115618|ref|XP_008457646.1|1.3e-3683.33PREDICTED: uncharacterized protein LOC103497294 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh02G003280.1CmoCh02G003280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh02G003280Cucsa.169260Cucumber (Gy14) v1cgycmoB0483
CmoCh02G003280CmaCh20G007710Cucurbita maxima (Rimu)cmacmoB554
CmoCh02G003280CmaCh02G003310Cucurbita maxima (Rimu)cmacmoB619
CmoCh02G003280Cla001666Watermelon (97103) v1cmowmB584
CmoCh02G003280Csa2G263880Cucumber (Chinese Long) v2cmocuB577
CmoCh02G003280ClCG02G011410Watermelon (Charleston Gray)cmowcgB536
CmoCh02G003280CSPI02G13110Wild cucumber (PI 183967)cmocpiB582
CmoCh02G003280Cp4.1LG16g02840Cucurbita pepo (Zucchini)cmocpeB575
CmoCh02G003280MELO3C034723.2Melon (DHL92) v3.6.1cmomedB606
CmoCh02G003280CsaV3_2G015670Cucumber (Chinese Long) v3cmocucB0687
CmoCh02G003280Cla97C02G037120Watermelon (97103) v2cmowmbB598
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh02G003280CmoCh20G007720Cucurbita moschata (Rifu)cmocmoB404
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh02G003280Cucurbita pepo (Zucchini)cmocpeB595
CmoCh02G003280Bottle gourd (USVL1VR-Ls)cmolsiB533
CmoCh02G003280Cucumber (Gy14) v2cgybcmoB220
CmoCh02G003280Cucumber (Gy14) v2cgybcmoB944
CmoCh02G003280Silver-seed gourdcarcmoB0436
CmoCh02G003280Silver-seed gourdcarcmoB0475
CmoCh02G003280Silver-seed gourdcarcmoB1156
CmoCh02G003280Watermelon (97103) v2cmowmbB587
CmoCh02G003280Wax gourdcmowgoB0736
CmoCh02G003280Cucurbita moschata (Rifu)cmocmoB388
CmoCh02G003280Cucumber (Gy14) v1cgycmoB1053
CmoCh02G003280Wild cucumber (PI 183967)cmocpiB644
CmoCh02G003280Cucumber (Chinese Long) v2cmocuB633
CmoCh02G003280Melon (DHL92) v3.5.1cmomeB527
CmoCh02G003280Melon (DHL92) v3.5.1cmomeB552
CmoCh02G003280Watermelon (Charleston Gray)cmowcgB515
CmoCh02G003280Watermelon (Charleston Gray)cmowcgB530
CmoCh02G003280Watermelon (97103) v1cmowmB597
CmoCh02G003280Watermelon (97103) v1cmowmB580
CmoCh02G003280Watermelon (97103) v1cmowmB603