CmaCh20G005300 (gene) Cucurbita maxima (Rimu)

NameCmaCh20G005300
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPeptidyl-prolyl cis-trans isomerase CYP37, chloroplastic
LocationCma_Chr20 : 2546143 .. 2548871 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGCCTGCATTATCATGTGAAGGTAAACTATTGAACAATAATTTTTTAAATCATAATTGATGGCATTTTAATTTATTGTTAAGAAGATAAGATAATGGTTCATTTTTTTGGGTTCAATCGATCCCTTTAGTATTTTTAAATTAGGTATATTTCTTCCAAATTTTGTTGAAATCATGGAATTTGAACATTTCCCTCACCAATGTCGAAAAATATCGATTGTGATTTAGTTTTTTCACGCCCATGTATCAAATGGCTAAACTAGAGTTTCTAAATTAGAGTTTCAATTTTAAACCCATGCTTTTGGCTCTTTTTCCTCGAAATTTGAGTTGAAATACTTGAATATTGACATTTCCCACAACAATGTGGAACTATATCGACCGTGACTCGATTTTTTATCGCTCGTGCTATGATTGACTGATTTTGTGTTTCCAAATTAGAATTTCGATTTTAAAATTTACGTGAAATTTAGGTCAAAATCATAGAATGTGAATTAAAAAATATTTTTACTATGGTAATATGAATCGAAGATAAGATATACATCACAAATATATTATTTTTAAAAAAATTAGGATACATACACATAGGAAGACCCACCCATTGATAACAAATGTCTGACACGTATTGGATATCTTATAAATTAAATTTTCAATTTTTTTTTTTTTTCATTTGAGTGAGTCTAGAGTTTTAAAATAAAATAAAATAAAATAATTATGAAATAAGTCTTAAATTATTAACTATTTTTCGTAGTGAAAAGAAAAATTAACATTTTTTATTTCGAGAATGAAGTAATTGGGGGATTTCATTTCCACGCCTTCAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGGTACGGTCAGCTTCTTCTCTTTTTCAGCTAGGGTTTTGTTCTTTACTGTACTGTTTTGCTCAAGAATCTTGCCGACGCCGATGGAGAGTCATTTCCTTTCTTTTCGTAATCCAAATTCGTTTTAGAATGCATTTCTGCAGATTTGTTCAACTATCTTATATTTCTCATGTTTCGCGCTTCCTAAGATGGTGTTTTTCTTTCAATTAGTTTCTATGAACATTTTTTTTACTGATTCTAATGGTTTTTTGGTTCCATGCCTAGACTTTGCACCTTCTTAGTTTATGAATTTCATTATCAATTGTGGACGGAGTGGGAAAATATCAGTAATTTGCGTTTGCATTTCGTGCTAATTAAGGGAATAAAGTGCTGCGTGGTTCTTCAACATTTGTTCTTTTGTGTCTGTATCTGTGTATGTGTACATGGAGATGGAGGCTGAAGTTTCTCAGTTTTGAGAGATTAGCTTCCAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGTGTTATGTAGATAACTATGGAATCTGATGATTGTGATATTGTCCTTGTTTTGTTGTTCAATATAGCTGTTTTCATAAGGTTCTCAAAGTCAGTCAGAATATCTGATATATTTGTTTCCATCAAACATATTGTCGGCGAAAAATTTGGAAGATGTTCTTATCAATTGAGCATTGTTCACTGTATAGAGTTGGTATAGCATATCTAACATTTTGTTGAGCCTTGATTTGATTTCTGTTGAGCATTTCCTTCCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGGCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTTTTGGTTCTTGTGTTTTGTTCTCTCCCTTTCCTTTTGGCTGATGATGTGCACATGAAGCCTTCTTGTTGCACTTTTTAGAACCAAAAGATCCGTCATTTGACTAAAACTAAAAAAAGGAAGCAATCTGTCATATTTGCCAACTAGTTTCTGCCCTGCTTACATCCAAACTGTAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTTTGGTATAATGTTCACTCATTTTATAGGTGTTTGTATTCAGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTAAATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATGAGTGAATCTGCACGAGTTAATGTGAAAAGGATTGATCATTCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

mRNA sequence

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

Coding sequence (CDS)

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Protein sequence

MRKSLHYHVKAESADQRIPHQVPRLLFEEAPLQLNRHHSRFQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
BLAST of CmaCh20G005300 vs. TrEMBL
Match: V4LEU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. TrEMBL
Match: A0A0D3EDA4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. TrEMBL
Match: A0A078GQP9_BRANA (BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. TrEMBL
Match: M4CE04_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +N+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNVIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. TrEMBL
Match: Q8LBZ1_ARATH (At5g22875 OS=Arabidopsis thaliana GN=At5g22875 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. TAIR10
Match: AT5G22875.1 (AT5G22875.1 unknown protein)

HSP 1 Score: 123.6 bits (309), Expect = 8.0e-29
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|659130932|ref|XP_008465426.1| (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+N+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTYTKK
Sbjct: 64  QTYTKK 69

BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|449456062|ref|XP_004145769.1| (PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+N+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPL PQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLSPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTYTKK
Sbjct: 64  QTYTKK 69

BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|567176676|ref|XP_006400796.1| (hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|685374923|ref|XP_009120627.1| (PREDICTED: uncharacterized protein LOC103845512 [Brassica rapa])

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +N+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNVIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|18420614|ref|NP_568425.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
V4LEU8_EUTSA3.2e-2690.77Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1[more]
A0A0D3EDA4_BRAOL3.2e-2690.77Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078GQP9_BRANA3.2e-2690.77BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1[more]
M4CE04_BRARP4.2e-2689.23Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Q8LBZ1_ARATH1.6e-2587.69At5g22875 OS=Arabidopsis thaliana GN=At5g22875 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
AT5G22875.18.0e-2987.69 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659130932|ref|XP_008465426.1|1.4e-2793.94PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo][more]
gi|449456062|ref|XP_004145769.1|1.2e-2692.42PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus][more]
gi|567176676|ref|XP_006400796.1|4.6e-2690.77hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum][more]
gi|685374923|ref|XP_009120627.1|6.0e-2689.23PREDICTED: uncharacterized protein LOC103845512 [Brassica rapa][more]
gi|18420614|ref|NP_568425.1|2.3e-2587.69uncharacterized protein [Arabidopsis thaliana][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh20G005300.1CmaCh20G005300.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36070FAMILY NOT NAMEDcoord: 32..119
score: 1.2
NoneNo IPR availablePANTHERPTHR36070:SF1SUBFAMILY NOT NAMEDcoord: 32..119
score: 1.2

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh20G005300Watermelon (97103) v2cmawmbB565
CmaCh20G005300Watermelon (97103) v2cmawmbB594
CmaCh20G005300Cucurbita maxima (Rimu)cmacmaB261
CmaCh20G005300Cucurbita maxima (Rimu)cmacmaB479
CmaCh20G005300Cucurbita maxima (Rimu)cmacmaB490
CmaCh20G005300Cucurbita maxima (Rimu)cmacmaB493
CmaCh20G005300Cucurbita moschata (Rifu)cmacmoB544
CmaCh20G005300Cucurbita moschata (Rifu)cmacmoB563
CmaCh20G005300Cucurbita moschata (Rifu)cmacmoB569
CmaCh20G005300Wild cucumber (PI 183967)cmacpiB551
CmaCh20G005300Cucumber (Chinese Long) v2cmacuB547
CmaCh20G005300Cucumber (Chinese Long) v2cmacuB561
CmaCh20G005300Melon (DHL92) v3.5.1cmameB520
CmaCh20G005300Watermelon (Charleston Gray)cmawcgB476
CmaCh20G005300Watermelon (Charleston Gray)cmawcgB506
CmaCh20G005300Watermelon (97103) v1cmawmB513
CmaCh20G005300Watermelon (97103) v1cmawmB523
CmaCh20G005300Cucurbita pepo (Zucchini)cmacpeB564
CmaCh20G005300Cucurbita pepo (Zucchini)cmacpeB582
CmaCh20G005300Cucurbita pepo (Zucchini)cmacpeB594
CmaCh20G005300Bottle gourd (USVL1VR-Ls)cmalsiB518
CmaCh20G005300Bottle gourd (USVL1VR-Ls)cmalsiB524
CmaCh20G005300Cucumber (Gy14) v2cgybcmaB388
CmaCh20G005300Cucumber (Gy14) v2cgybcmaB790
CmaCh20G005300Cucumber (Gy14) v2cgybcmaB795
CmaCh20G005300Melon (DHL92) v3.6.1cmamedB568
CmaCh20G005300Melon (DHL92) v3.6.1cmamedB597
CmaCh20G005300Silver-seed gourdcarcmaB1266
CmaCh20G005300Cucumber (Chinese Long) v3cmacucB0656
CmaCh20G005300Cucumber (Chinese Long) v3cmacucB0672
CmaCh20G005300Cucumber (Chinese Long) v3cmacucB0666