CmaCh20G005300 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGGAAGAGCCTGCATTATCATGTGAAGGTAAACTATTGAACAATAATTTTTTAAATCATAATTGATGGCATTTTAATTTATTGTTAAGAAGATAAGATAATGGTTCATTTTTTTGGGTTCAATCGATCCCTTTAGTATTTTTAAATTAGGTATATTTCTTCCAAATTTTGTTGAAATCATGGAATTTGAACATTTCCCTCACCAATGTCGAAAAATATCGATTGTGATTTAGTTTTTTCACGCCCATGTATCAAATGGCTAAACTAGAGTTTCTAAATTAGAGTTTCAATTTTAAACCCATGCTTTTGGCTCTTTTTCCTCGAAATTTGAGTTGAAATACTTGAATATTGACATTTCCCACAACAATGTGGAACTATATCGACCGTGACTCGATTTTTTATCGCTCGTGCTATGATTGACTGATTTTGTGTTTCCAAATTAGAATTTCGATTTTAAAATTTACGTGAAATTTAGGTCAAAATCATAGAATGTGAATTAAAAAATATTTTTACTATGGTAATATGAATCGAAGATAAGATATACATCACAAATATATTATTTTTAAAAAAATTAGGATACATACACATAGGAAGACCCACCCATTGATAACAAATGTCTGACACGTATTGGATATCTTATAAATTAAATTTTCAATTTTTTTTTTTTTTCATTTGAGTGAGTCTAGAGTTTTAAAATAAAATAAAATAAAATAATTATGAAATAAGTCTTAAATTATTAACTATTTTTCGTAGTGAAAAGAAAAATTAACATTTTTTATTTCGAGAATGAAGTAATTGGGGGATTTCATTTCCACGCCTTCAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGGTACGGTCAGCTTCTTCTCTTTTTCAGCTAGGGTTTTGTTCTTTACTGTACTGTTTTGCTCAAGAATCTTGCCGACGCCGATGGAGAGTCATTTCCTTTCTTTTCGTAATCCAAATTCGTTTTAGAATGCATTTCTGCAGATTTGTTCAACTATCTTATATTTCTCATGTTTCGCGCTTCCTAAGATGGTGTTTTTCTTTCAATTAGTTTCTATGAACATTTTTTTTACTGATTCTAATGGTTTTTTGGTTCCATGCCTAGACTTTGCACCTTCTTAGTTTATGAATTTCATTATCAATTGTGGACGGAGTGGGAAAATATCAGTAATTTGCGTTTGCATTTCGTGCTAATTAAGGGAATAAAGTGCTGCGTGGTTCTTCAACATTTGTTCTTTTGTGTCTGTATCTGTGTATGTGTACATGGAGATGGAGGCTGAAGTTTCTCAGTTTTGAGAGATTAGCTTCCAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGTGTTATGTAGATAACTATGGAATCTGATGATTGTGATATTGTCCTTGTTTTGTTGTTCAATATAGCTGTTTTCATAAGGTTCTCAAAGTCAGTCAGAATATCTGATATATTTGTTTCCATCAAACATATTGTCGGCGAAAAATTTGGAAGATGTTCTTATCAATTGAGCATTGTTCACTGTATAGAGTTGGTATAGCATATCTAACATTTTGTTGAGCCTTGATTTGATTTCTGTTGAGCATTTCCTTCCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGGCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTTTTGGTTCTTGTGTTTTGTTCTCTCCCTTTCCTTTTGGCTGATGATGTGCACATGAAGCCTTCTTGTTGCACTTTTTAGAACCAAAAGATCCGTCATTTGACTAAAACTAAAAAAAGGAAGCAATCTGTCATATTTGCCAACTAGTTTCTGCCCTGCTTACATCCAAACTGTAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTTTGGTATAATGTTCACTCATTTTATAGGTGTTTGTATTCAGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTAAATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATGAGTGAATCTGCACGAGTTAATGTGAAAAGGATTGATCATTCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA MRKSLHYHVKAESADQRIPHQVPRLLFEEAPLQLNRHHSRFQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
BLAST of CmaCh20G005300 vs. TrEMBL
Match: V4LEU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26 Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. TrEMBL
Match: A0A0D3EDA4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26 Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. TrEMBL
Match: A0A078GQP9_BRANA (BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26 Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. TrEMBL
Match: M4CE04_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26 Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. TrEMBL
Match: Q8LBZ1_ARATH (At5g22875 OS=Arabidopsis thaliana GN=At5g22875 PE=2 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25 Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. TAIR10
Match: AT5G22875.1 (AT5G22875.1 unknown protein) HSP 1 Score: 123.6 bits (309), Expect = 8.0e-29 Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|659130932|ref|XP_008465426.1| (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo]) HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27 Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1
BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|449456062|ref|XP_004145769.1| (PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus]) HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26 Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1
BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|567176676|ref|XP_006400796.1| (hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum]) HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26 Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|685374923|ref|XP_009120627.1| (PREDICTED: uncharacterized protein LOC103845512 [Brassica rapa]) HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26 Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
BLAST of CmaCh20G005300 vs. NCBI nr
Match: gi|18420614|ref|NP_568425.1| (uncharacterized protein [Arabidopsis thaliana]) HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25 Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |