Carg03198 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03198
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transmembrane protein
Location	Cucurbita_argyrosperma_scaffold_005 : 595719 .. 596998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGAGTTATGTAGATAACTATGGAACTGGTCATTGTGATATTGTCCTTGTTTTCAATATTATCATAATGTTCTCAAAGTCAGAGTATCTGATATATTTGTTTCCATCAAATATATTGTCGGCAAAAAGTTTGGAAGATGTTCTTATCAATTGAGCATTGTTCATTGTATATAGAGTTGGTGTCTCTGAGATCCCACATCGGTTAGGGAGGAGAACGAAATATTCTTTATAAGGGTGTAGAAACCTCTCCTAGCTGATGCGTTTTAAAATCTTTGAGAGGAAACCTGAAAGCAAAGGTTAAAAAATGACAATATCTGCTAGTGGTAGGTTTTGGCCGTTACGGTGTTGGTAGAGGTACTCTTGTTGTCAATATATAATGTGTCAAGTATGGTATATCTAGCATTCTGTTGAGCCTTGATTTGATTTTATTCCTGTTGAGCATTTCCTTTCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGTCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTCTTGGTTCTTGTGTTTTGTTCTCTCCTTTTCCTTTTTCCCTGATGATGTGCACGTAAAGCCTTCTTGTTGCGCTTTTTAGAACCAAAAGATCCATCTTTTATACTAAAACTAAAAAAAAGGGAGCAATCTGTCGCATTTGCCAACTAGTTTCTGCCCTGCTTACTTCCAAACGGCAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTCTGGTATAATTTTCACTCATTTTGTAGGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTACATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATTTGCACGAGTTAATGTGAATAGGATTGATCATCCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

mRNA sequence

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Coding sequence (CDS)

ATGGAGATGGAAGCTGAAGTTTCTCAGTTTAAGAGATTAGCTGCAAAAGTGTTTGTATTCAGATCACTTGCCGAAAACCCGATGACACGACGGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAAGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Protein sequence

MEMEAEVSQFKRLAAKVFVFRSLAENPMTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK

Homology

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_022944261.1 (uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944263.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944264.1 uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944266.1 uncharacterized protein LOC111448766 [Cucurbita moschata])

HSP 1 Score: 140.2 bits (352), Expect = 3.6e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_023513377.1 (uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378.1 uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.0 bits (349), Expect = 8.1e-30
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPA+PLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPARPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_022986414.1 (uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986416.1 uncharacterized protein LOC111484157 [Cucurbita maxima])

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-29
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 28 MTRRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 87
          MTR+NIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP
Sbjct: 1  MTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGP 60

Query: 88 DHQTYTKK 96
          DHQTYTKK
Sbjct: 61 DHQTYTKK 68

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_022140323.1 (uncharacterized protein LOC111011024 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 4.4e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0


Query: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89
          RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4  RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPGKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 90 QTYTKK 96
          QTY+KK
Sbjct: 64 QTYSKK 69

[Close]

BLAST of Carg03198 vs. NCBI nr
Match: XP_008465426.1 (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo] >XP_016903386.1 PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 9.9e-28
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89
          RRN+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4  RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 90 QTYTKK 96
          QTYTKK
Sbjct: 64 QTYTKK 69

[Close]

BLAST of Carg03198 vs. TAIR10
Match: AT5G22875.1 (unknown protein)

HSP 1 Score: 124.8 bits (312), Expect = 2.9e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TrEMBL
Match: tr|A0A1S3CQB9|A0A1S3CQB9_CUCME (uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-28
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 0


Query: 30 RRNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 89
          RRN+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4  RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 90 QTYTKK 96
          QTYTKK
Sbjct: 64 QTYTKK 69

[Close]

BLAST of Carg03198 vs. TrEMBL
Match: tr|V4LEU8|V4LEU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015213mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TrEMBL
Match: tr|A0A0D3EDA4|A0A0D3EDA4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106313351 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TrEMBL
Match: tr|A0A078GQP9|A0A078GQP9_BRANA (BnaC09g36200D protein OS=Brassica napus OX=3708 GN=BnaC09g36200D PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RNIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

[Close]

BLAST of Carg03198 vs. TrEMBL
Match: tr|M4CE04|M4CE04_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 31 RNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 90
          RN+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5  RNVIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 91 TYTKK 96
          TY KK
Sbjct: 65 TYPKK 69

The following BLAST results are available for this feature:

BLAST of Carg03198 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022944261.1	3.6e-30	100.00	uncharacterized protein LOC111448766 [Cucurbita moschata] >XP_022944262.1 unchar...	[more]
XP_023513377.1	8.1e-30	98.53	uncharacterized protein LOC111777879 [Cucurbita pepo subsp. pepo] >XP_023513378....	[more]
XP_022986414.1	1.1e-29	98.53	uncharacterized protein LOC111484157 [Cucurbita maxima] >XP_022986415.1 uncharac...	[more]
XP_022140323.1	4.4e-28	96.97	uncharacterized protein LOC111011024 [Momordica charantia]	[more]
XP_008465426.1	9.9e-28	95.45	PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo] >XP_016903386.1 P...	[more]

BLAST of Carg03198 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G22875.1	2.9e-29	89.23	unknown protein	[more]

BLAST of Carg03198 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03198 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQB9\|A0A1S3CQB9_CUCME	6.6e-28	95.45	uncharacterized protein LOC103503042 OS=Cucumis melo OX=3656 GN=LOC103503042 PE=...	[more]
tr\|V4LEU8\|V4LEU8_EUTSA	2.1e-26	92.31	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10015213mg PE=...	[more]
tr\|A0A0D3EDA4\|A0A0D3EDA4_BRAOL	2.1e-26	92.31	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10631335...	[more]
tr\|A0A078GQP9\|A0A078GQP9_BRANA	2.1e-26	92.31	BnaC09g36200D protein OS=Brassica napus OX=3708 GN=BnaC09g36200D PE=4 SV=1	[more]
tr\|M4CE04\|M4CE04_BRARP	2.8e-26	90.77	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03198-RA	Carg03198-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..95
None	No IPR available	PANTHER	PTHR36070	FAMILY NOT NAMED	coord: 28..95

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03198	Cla008695	Watermelon (97103) v1	carwmB0330
Carg03198	Csa6G148310	Cucumber (Chinese Long) v2	carcuB0371
Carg03198	MELO3C026956	Melon (DHL92) v3.5.1	carmeB0340
Carg03198	ClCG02G021670	Watermelon (Charleston Gray)	carwcgB0327
Carg03198	CSPI06G11970	Wild cucumber (PI 183967)	carcpiB0374
Carg03198	Cucsa.385660	Cucumber (Gy14) v1	carcgyB0403
Carg03198	CmaCh20G005300	Cucurbita maxima (Rimu)	carcmaB0473
Carg03198	CmoCh20G005610	Cucurbita moschata (Rifu)	carcmoB0464
Carg03198	Lsi10G012190	Bottle gourd (USVL1VR-Ls)	carlsiB303
Carg03198	Cla97C02G047700	Watermelon (97103) v2	carwmbB0346
Carg03198	Bhi10G000099	Wax gourd	carwgoB0421

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03198	Wax gourd	carwgoB0423
Carg03198	Silver-seed gourd	carcarB187
Carg03198	Silver-seed gourd	carcarB287
Carg03198	Silver-seed gourd	carcarB366
Carg03198	Cucumber (Gy14) v2	carcgybB0351
Carg03198	Cucurbita maxima (Rimu)	carcmaB0474
Carg03198	Cucurbita maxima (Rimu)	carcmaB0482
Carg03198	Cucurbita moschata (Rifu)	carcmoB0460
Carg03198	Cucurbita moschata (Rifu)	carcmoB0465
Carg03198	Cucurbita moschata (Rifu)	carcmoB0469
Carg03198	Cucurbita pepo (Zucchini)	carcpeB0465
Carg03198	Cucurbita pepo (Zucchini)	carcpeB0480
Carg03198	Cucumber (Chinese Long) v3	carcucB0375
Carg03198	Melon (DHL92) v3.6.1	carmedB0346
Carg03198	Watermelon (97103) v2	carwmbB0340
Carg03198	Watermelon (97103) v2	carwmbB0353