ClCG02G021670 (gene) Watermelon (Charleston Gray)

NameClCG02G021670
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr02 : 36124466 .. 36127030 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGAAGGAAGGGAATTTTGGGTATTTCATTTCCACGCCATGAGATAGTCTCCAAGGCGGAGCCTCTCAGATCAACAAATTCCGCATCTCTTCCCTTGTTTGCTCTTTGAAGAAGCTCCTCTTGAGTTCGATCGCTATCTCTCTCAACCCCAAATCCTTCGGTACGGTCGACATCTTCTTGTTTCCAGGTAGGGTTTTGCTTTTACTTAACTATTTTGGCTAAGAATTGGCCGAGCCCGCTGTTAAATTTCCTTTAGAGCATTCCTGCAGGTTGCACATTTTTATTCAACTAACTTGTATTGCTCACGTTTCTCGATTCCTATGATGTTGCTTTTATTGCCAATAATTTCTATGAACATTTTTTTACGATTGATTCTATGTTATTTTTGTTCAAATGCCTTGGGATTCGTATTTTTTTGTCATATTTACGCTATTTACATTTTTTAATCTAGGATTTAGAAGATTTCACTAAATAAATTCTCTAAACTAGAGGCGCCAATGCAATGTAATTTGAAGTATTCTCTCAATAGTATATTGTTCACGCTCTGTCTATGAATGTAGCTAACACACTATTAGTGCATCACGTAAATTTTTGTGTTGATTCTTTACTGTTTATGCTTTTTTTTGTTTATCTTTATTTGTCGATTTCACATCACTTTCGTTCCTAATTAATATTGATTTCTACTTGTTTGGTCTTCTATAAATTTCCAAACCCACAAGTGAGGAAAGTGTGAGTTGATATAATATTGTAATTTTGTTTGCATTCATTGCCAATTAGTGGAATGAAGTTCTGCTTGGAGCTCAACCATCTGTTCTTTTGTGTCTGTATTTGTATATGTGTCCATGGAGATGGAGGCTTAAGTTTCCCAGTTTAAGATTAGCTACAGAAGTGTTATGATTTGCTAGTAGTTGTGGATTGCTATTTAGTTTTGTTAGTCAATAATTGAGAATGCTGCATTTACAGAAGACTTCATTTCACATCTCCTGTTGTGTATAAAATTATGAAATCTGGTCATTGTGATATTTTCGTTCTTTTGTTGTTCAATATAGTTCTTTTCGTAATGTTCTCAAAGTCGAGAGTATCTGATACACTTGTTTCAATCAAACATATTGTGGCCGAGAAATTTGGAAGATGTTCTTATTAATTGAGCATTGTTCATTGTATAGAGTTGGTGTCGGTAGAACTAGAGGTAACCTTGTTGTCAATATATCAAATGTAGCATTTTGTTGAGCCTTGATTTGATTTCTGTAAAGCATTTCCTTCCTCTTGTCAATTCAAGGTGGTTGGTGCTTTCTTGTATGATAAAGTTCTTTCTAGGTTAAAGTTTACAGAATATTAATTTCTATATGCCTTAACAGTTTTAGATCTAAAATGTCTCTCTTCTTTTCCTTACTGTCTTGGTTCCTGTGTTTTCTTCTCTCCTCTTCCTTTTCAGCTGATGATATGCACTTGAGGCCTTTTTGTTGCACTTTTTAAAACCAAAAGATCTGTGATTTACTAAAAGTAAAAAAGAAAAAAGGAAGCAATCTGGTATATTTGCCAATTTGTTTGTCTTGTTTACTTGCTGATGACAGACTTAGATCTGTTCTGATTAATTTTCTGAGTGCTTAAAACTGCTTTTTTTTTTTTTTTTTTCACTTTAAAATACTTTTTCAAGCACTTAAATAATCAATCCAAATAGATATTTATACTCCTATTACTACTCTTTGATACTCAATCAATTCCTCTTTTTGGATGCACCCCTATAGTCCCATATTCATATTTAGTAGTTCCTGAACTATTTCTTCTATTTTAAGGATCATTGAAATAAACAAGAATGCTATTTCTATGAATAATATCATTTATGTGTCGGGGTGGTAGCTCTTTTTCTCGTTCTTGAAGTGATTCTAATGAATTCATGCCATTAAATTAGAATCATCGTGAAAAATATGTGAGATTAGATTGAATTACTATGAATTTTTCACTTATTTTGTCAGTTTCTTTTCATATCACTCATAGAAAACTCGATGACACGGCGTCGGAATTTGATTGTTGCCATTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTAAGTAAATAAATTCATTACTTTACTGACAATTTCATTCCTTTGAAGTTTGCATCTTTGAATGAATGAATGAATCTGCACAAGTTAATATTGAAAAGGATTATGATCCAGGTCTTCCAAAAAACCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGCTCCCGGGACGTGGGACCTGACCATCAAACTTACACTAAGAAGTGATTTCTTTTGAATGCTTCTTTTCAGTAAAGTATGTGTTGGTTTATTTCAATGTAGAAGAAGACTACATGAAATTTTTTTTCTCTCTTATGGAGAAACAGTAGTTCGCTTGATTTAGAAATATGTGTTGATCAAAATATTGATGTCTATATAGGTATTGAGATTTTAGTTTTACCGATGTATTGATAAAATATTGCTATTTATGTAAATTACAAAAAAATATTTAAATGAACAATTAAA

mRNA sequence

GAAGAAGGAAGGGAATTTTGGGTATTTCATTTCCACGCCATGAGATAGTCTCCAAGGCGGAGCCTCTCAGATCAACAAATTCCGCATCTCTTCCCTTGTTTGCTCTTTGAAGAAGCTCCTCTTGAGTTCGATCGCTATCTCTCTCAACCCCAAATCCTTCGGTACGGTCGACATCTTCTTGTTTCCAGTTTCTTTTCATATCACTCATAGAAAACTCGATGACACGGCGTCGGAATTTGATTGTTGCCATTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCCAAAAAACCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGCTCCCGGGACGTGGGACCTGACCATCAAACTTACACTAAGAAGTGATTTCTTTTGAATGCTTCTTTTCAGTAAAGTATGTGTTGGTTTATTTCAATGTAGAAGAAGACTACATGAAATTTTTTTTCTCTCTTATGGAGAAACAGTAGTTCGCTTGATTTAGAAATATGTGTTGATCAAAATATTGATGTCTATATAGGTATTGAGATTTTAGTTTTACCGATGTATTGATAAAATATTGCTATTTATGTAAATTACAAAAAAATATTTAAATGAACAATTAAA

Coding sequence (CDS)

ATGACACGGCGTCGGAATTTGATTGTTGCCATTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCATTTCCCTTTTACATGGCGTCTTCCAAAAAACCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGCTCCCGGGACGTGGGACCTGACCATCAAACTTACACTAAGAAGTGA

Protein sequence

MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
BLAST of ClCG02G021670 vs. TrEMBL
Match: G7JM87_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g057190 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.7e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M+RRRNL+VA GL+AFASAG+AFPFYMASSKKPVIDP KPL PQATFRGPYINTGSRD+G
Sbjct: 1  MSRRRNLVVAAGLLAFASAGMAFPFYMASSKKPVIDPTKPLSPQATFRGPYINTGSRDIG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHETYKKK 69

BLAST of ClCG02G021670 vs. TrEMBL
Match: V4LEU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M   RN+IVA GL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

BLAST of ClCG02G021670 vs. TrEMBL
Match: A0A061GW49_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_041582 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          MTR RN++VA GL+AFA+AGLAFPFYMA+SK+PVID +KPLPPQATFRGPY+NTGSRDVG
Sbjct: 1  MTRARNVVVATGLLAFAAAGLAFPFYMATSKRPVIDSSKPLPPQATFRGPYVNTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTY KK
Sbjct: 61 PDHQTYPKK 69

BLAST of ClCG02G021670 vs. TrEMBL
Match: A0A0D3EDA4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M   RN+IVA GL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

BLAST of ClCG02G021670 vs. TrEMBL
Match: A0A078GQP9_BRANA (BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.4e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M   RN+IVA GL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

BLAST of ClCG02G021670 vs. TAIR10
Match: AT5G22875.1 (AT5G22875.1 unknown protein)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-29
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M   RN++VA GL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

BLAST of ClCG02G021670 vs. NCBI nr
Match: gi|659130932|ref|XP_008465426.1| (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo])

HSP 1 Score: 141.4 bits (355), Expect = 6.1e-31
Identity = 67/69 (97.10%), Postives = 68/69 (98.55%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          MTRRRNLIVA+GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTYTKK
Sbjct: 61 PDHQTYTKK 69

BLAST of ClCG02G021670 vs. NCBI nr
Match: gi|449456062|ref|XP_004145769.1| (PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-30
Identity = 66/69 (95.65%), Postives = 67/69 (97.10%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          MTRRRNLIVA+GLIAFASAGLAFPFYMASSKKPVIDP KPL PQATFRGPYINTGSRDVG
Sbjct: 1  MTRRRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLSPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTYTKK
Sbjct: 61 PDHQTYTKK 69

BLAST of ClCG02G021670 vs. NCBI nr
Match: gi|357472077|ref|XP_003606323.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 129.4 bits (324), Expect = 2.4e-27
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M+RRRNL+VA GL+AFASAG+AFPFYMASSKKPVIDP KPL PQATFRGPYINTGSRD+G
Sbjct: 1  MSRRRNLVVAAGLLAFASAGMAFPFYMASSKKPVIDPTKPLSPQATFRGPYINTGSRDIG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHETYKKK 69

BLAST of ClCG02G021670 vs. NCBI nr
Match: gi|567176676|ref|XP_006400796.1| (hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 59/69 (85.51%), Postives = 62/69 (89.86%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          M   RN+IVA GL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVG
Sbjct: 1  MAPSRNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDH+TY KK
Sbjct: 61 PDHRTYPKK 69

BLAST of ClCG02G021670 vs. NCBI nr
Match: gi|590587793|ref|XP_007016057.1| (Uncharacterized protein TCM_041582 [Theobroma cacao])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-26
Identity = 57/69 (82.61%), Postives = 65/69 (94.20%), Query Frame = 1

Query: 1  MTRRRNLIVAIGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVG 60
          MTR RN++VA GL+AFA+AGLAFPFYMA+SK+PVID +KPLPPQATFRGPY+NTGSRDVG
Sbjct: 1  MTRARNVVVATGLLAFAAAGLAFPFYMATSKRPVIDSSKPLPPQATFRGPYVNTGSRDVG 60

Query: 61 PDHQTYTKK 70
          PDHQTY KK
Sbjct: 61 PDHQTYPKK 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
G7JM87_MEDTR1.7e-2785.51Transmembrane protein, putative OS=Medicago truncatula GN=MTR_4g057190 PE=4 SV=1[more]
V4LEU8_EUTSA1.4e-2685.51Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1[more]
A0A061GW49_THECC1.4e-2682.61Uncharacterized protein OS=Theobroma cacao GN=TCM_041582 PE=4 SV=1[more]
A0A0D3EDA4_BRAOL1.4e-2685.51Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078GQP9_BRANA1.4e-2685.51BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G22875.13.6e-2982.61 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659130932|ref|XP_008465426.1|6.1e-3197.10PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo][more]
gi|449456062|ref|XP_004145769.1|5.2e-3095.65PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus][more]
gi|357472077|ref|XP_003606323.1|2.4e-2785.51transmembrane protein, putative [Medicago truncatula][more]
gi|567176676|ref|XP_006400796.1|2.0e-2685.51hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum][more]
gi|590587793|ref|XP_007016057.1|2.0e-2682.61Uncharacterized protein TCM_041582 [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G021670.1ClCG02G021670.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36070FAMILY NOT NAMEDcoord: 1..69
score: 6.6

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G021670Bottle gourd (USVL1VR-Ls)lsiwcgB235
ClCG02G021670Cucumber (Gy14) v2cgybwcgB195
ClCG02G021670Cucumber (Gy14) v2cgybwcgB401
ClCG02G021670Cucumber (Gy14) v2cgybwcgB406
ClCG02G021670Melon (DHL92) v3.6.1medwcgB086
ClCG02G021670Melon (DHL92) v3.6.1medwcgB320
ClCG02G021670Melon (DHL92) v3.6.1medwcgB516
ClCG02G021670Silver-seed gourdcarwcgB0152
ClCG02G021670Silver-seed gourdcarwcgB0241
ClCG02G021670Silver-seed gourdcarwcgB0900
ClCG02G021670Cucumber (Chinese Long) v3cucwcgB215
ClCG02G021670Cucumber (Chinese Long) v3cucwcgB458
ClCG02G021670Cucumber (Chinese Long) v3cucwcgB462
ClCG02G021670Watermelon (97103) v2wcgwmbB133
ClCG02G021670Watermelon (97103) v2wcgwmbB138
ClCG02G021670Watermelon (97103) v2wcgwmbB157
ClCG02G021670Wax gourdwcgwgoB313
ClCG02G021670Watermelon (Charleston Gray)wcgwcgB044
ClCG02G021670Watermelon (Charleston Gray)wcgwcgB128
ClCG02G021670Cucumber (Gy14) v1cgywcgB198
ClCG02G021670Cucurbita maxima (Rimu)cmawcgB191
ClCG02G021670Cucurbita maxima (Rimu)cmawcgB227
ClCG02G021670Cucurbita maxima (Rimu)cmawcgB541
ClCG02G021670Cucurbita maxima (Rimu)cmawcgB734
ClCG02G021670Cucurbita maxima (Rimu)cmawcgB756
ClCG02G021670Cucurbita moschata (Rifu)cmowcgB211
ClCG02G021670Cucurbita moschata (Rifu)cmowcgB538
ClCG02G021670Cucurbita moschata (Rifu)cmowcgB738
ClCG02G021670Cucurbita moschata (Rifu)cmowcgB758
ClCG02G021670Wild cucumber (PI 183967)cpiwcgB214
ClCG02G021670Wild cucumber (PI 183967)cpiwcgB463
ClCG02G021670Cucumber (Chinese Long) v2cuwcgB212
ClCG02G021670Cucumber (Chinese Long) v2cuwcgB444
ClCG02G021670Melon (DHL92) v3.5.1mewcgB327
ClCG02G021670Melon (DHL92) v3.5.1mewcgB522
ClCG02G021670Watermelon (97103) v1wcgwmB175
ClCG02G021670Watermelon (97103) v1wcgwmB195
ClCG02G021670Cucurbita pepo (Zucchini)cpewcgB266
ClCG02G021670Cucurbita pepo (Zucchini)cpewcgB551
ClCG02G021670Cucurbita pepo (Zucchini)cpewcgB650
ClCG02G021670Bottle gourd (USVL1VR-Ls)lsiwcgB130