CmaCh20G005300.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh20G005300.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionPeptidyl-prolyl cis-trans isomerase CYP37, chloroplastic
LocationCma_Chr20 : 2546143 .. 2548871 (-)
Sequence length650
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGAAGAGCCTGCATTATCATGTGAAGGTAAACTATTGAACAATAATTTTTTAAATCATAATTGATGGCATTTTAATTTATTGTTAAGAAGATAAGATAATGGTTCATTTTTTTGGGTTCAATCGATCCCTTTAGTATTTTTAAATTAGGTATATTTCTTCCAAATTTTGTTGAAATCATGGAATTTGAACATTTCCCTCACCAATGTCGAAAAATATCGATTGTGATTTAGTTTTTTCACGCCCATGTATCAAATGGCTAAACTAGAGTTTCTAAATTAGAGTTTCAATTTTAAACCCATGCTTTTGGCTCTTTTTCCTCGAAATTTGAGTTGAAATACTTGAATATTGACATTTCCCACAACAATGTGGAACTATATCGACCGTGACTCGATTTTTTATCGCTCGTGCTATGATTGACTGATTTTGTGTTTCCAAATTAGAATTTCGATTTTAAAATTTACGTGAAATTTAGGTCAAAATCATAGAATGTGAATTAAAAAATATTTTTACTATGGTAATATGAATCGAAGATAAGATATACATCACAAATATATTATTTTTAAAAAAATTAGGATACATACACATAGGAAGACCCACCCATTGATAACAAATGTCTGACACGTATTGGATATCTTATAAATTAAATTTTCAATTTTTTTTTTTTTTCATTTGAGTGAGTCTAGAGTTTTAAAATAAAATAAAATAAAATAATTATGAAATAAGTCTTAAATTATTAACTATTTTTCGTAGTGAAAAGAAAAATTAACATTTTTTATTTCGAGAATGAAGTAATTGGGGGATTTCATTTCCACGCCTTCAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGGTACGGTCAGCTTCTTCTCTTTTTCAGCTAGGGTTTTGTTCTTTACTGTACTGTTTTGCTCAAGAATCTTGCCGACGCCGATGGAGAGTCATTTCCTTTCTTTTCGTAATCCAAATTCGTTTTAGAATGCATTTCTGCAGATTTGTTCAACTATCTTATATTTCTCATGTTTCGCGCTTCCTAAGATGGTGTTTTTCTTTCAATTAGTTTCTATGAACATTTTTTTTACTGATTCTAATGGTTTTTTGGTTCCATGCCTAGACTTTGCACCTTCTTAGTTTATGAATTTCATTATCAATTGTGGACGGAGTGGGAAAATATCAGTAATTTGCGTTTGCATTTCGTGCTAATTAAGGGAATAAAGTGCTGCGTGGTTCTTCAACATTTGTTCTTTTGTGTCTGTATCTGTGTATGTGTACATGGAGATGGAGGCTGAAGTTTCTCAGTTTTGAGAGATTAGCTTCCAAAGTGTTATGATTTGCTCGTACTTGTGGATTTTTGTCACTTTCATAATTACAGAAGTTTTCATTTCACATTTCGTGTTATGTAGATAACTATGGAATCTGATGATTGTGATATTGTCCTTGTTTTGTTGTTCAATATAGCTGTTTTCATAAGGTTCTCAAAGTCAGTCAGAATATCTGATATATTTGTTTCCATCAAACATATTGTCGGCGAAAAATTTGGAAGATGTTCTTATCAATTGAGCATTGTTCACTGTATAGAGTTGGTATAGCATATCTAACATTTTGTTGAGCCTTGATTTGATTTCTGTTGAGCATTTCCTTCCATTCGTCAATTCAAGGTGGTTGGTGCTTTCTTGTAAGACAACTTTGTAGCTTAAGTTTACAGAATATCAATTGCTGTCGGCCTCACAGTTCTGGCTCTAAAATGTTCCTCTTCTTTTCCTTGCTGTTTTGGTTCTTGTGTTTTGTTCTCTCCCTTTCCTTTTGGCTGATGATGTGCACATGAAGCCTTCTTGTTGCACTTTTTAGAACCAAAAGATCCGTCATTTGACTAAAACTAAAAAAAGGAAGCAATCTGTCATATTTGCCAACTAGTTTCTGCCCTGCTTACATCCAAACTGTAGACACATATTCCTATTAGAATTACTTGAAATTTTACCATATTGGATTTCTTTTTGGTATAATGTTCACTCATTTTATAGGTGTTTGTATTCAGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTAAGTAAATGAACTCATGGCTGGTACTGACAATTTTATGCATTTGAACGAATGAATGAGTGAATCTGCACGAGTTAATGTGAAAAGGATTGATCATTCAGGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

mRNA sequence

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGATTTATCTTCAATGTTCCTAATGTGCCCTGTAAGTTGAATGTGTTGGTTCATTTTAAAGTAGAAGAAGACCACGTTAATTCTTTTTTTCTTTTTTTTTTCCCCCCCTCTTATGGAGAAACCAGCAGTTCACTTGACATAGAAATGGAGGATTAAAATATTGAGGTCCATATCGATAATAGAATTTCAATTTTACAAATTTGTAAATATAAATATCATTATCGACGAATATTTCTGTATATTACATTATAAATTTTGTTATTTTTTTTACTGATTCAGCTTTACAGGTCCAA

Coding sequence (CDS)

ATGAGGAAGAGCCTGCATTATCATGTGAAGGCTGAATCCGCAGATCAACGAATTCCTCATCAGGTCCCTCGTCTGCTCTTTGAAGAAGCTCCTCTTCAGCTCAATCGTCATCACTCTCGATTCCAAATCCATCGATCACTTGTAGAAAATCCGATGACACGACAGAATATTATCGTTGCCACTGGGTTGATAGCCTTTGCATCTGCTGGATTAGCCTTTCCCTTTTACATGGCGTCTTCCAAAAAGCCAGTTATAGATCCGGCAAAGCCACTTCCACCGCAGGCCACTTTTCGAGGTCCTTATATAAACACTGGTTCCCGGGATGTCGGACCCGACCATCAAACTTACACCAAGAAGTGA

Protein sequence

MRKSLHYHVKAESADQRIPHQVPRLLFEEAPLQLNRHHSRFQIHRSLVENPMTRQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQTYTKK
Homology
[Close]
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match: V4LEU8_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match: A0A0D3EDA4_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match: A0A078GQP9_BRANA (BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.2e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match: M4CE04_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +N+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNVIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match: Q8LBZ1_ARATH (At5g22875 OS=Arabidopsis thaliana GN=At5g22875 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. TAIR10
Match: AT5G22875.1 (AT5G22875.1 unknown protein)

HSP 1 Score: 123.6 bits (309), Expect = 8.0e-29
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match: gi|659130932|ref|XP_008465426.1| (PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo])

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 62/66 (93.94%), Postives = 64/66 (96.97%), Query Frame = 1 

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+N+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTYTKK
Sbjct: 64  QTYTKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match: gi|449456062|ref|XP_004145769.1| (PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 61/66 (92.42%), Postives = 63/66 (95.45%), Query Frame = 1 

Query: 54  RQNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDH 113
           R+N+IVA GLIAFASAGLAFPFYMASSKKPVIDP KPL PQATFRGPYINTGSRDVGPDH
Sbjct: 4   RRNLIVAVGLIAFASAGLAFPFYMASSKKPVIDPTKPLSPQATFRGPYINTGSRDVGPDH 63

Query: 114 QTYTKK 120
           QTYTKK
Sbjct: 64  QTYTKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match: gi|567176676|ref|XP_006400796.1| (hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum])

HSP 1 Score: 125.9 bits (315), Expect = 4.6e-26
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NIIVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match: gi|685374923|ref|XP_009120627.1| (PREDICTED: uncharacterized protein LOC103845512 [Brassica rapa])

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +N+IVATGL+ FASAGLAFPFYMASSKKPVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNVIVATGLVVFASAGLAFPFYMASSKKPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

[Close]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match: gi|18420614|ref|NP_568425.1| (uncharacterized protein [Arabidopsis thaliana])

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-25
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1 

Query: 55  QNIIVATGLIAFASAGLAFPFYMASSKKPVIDPAKPLPPQATFRGPYINTGSRDVGPDHQ 114
           +NI+VATGL+ FASAGLAFPFYMASSK+PVIDP KPLPPQATFRGPYINTGSRDVGPDH+
Sbjct: 5   RNIVVATGLVLFASAGLAFPFYMASSKQPVIDPTKPLPPQATFRGPYINTGSRDVGPDHR 64

Query: 115 TYTKK 120
           TY KK
Sbjct: 65  TYPKK 69

The following BLAST results are available for this feature:
BLAST of CmaCh20G005300.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh20G005300.1 vs. TrEMBL
Match NameE-valueIdentityDescription
V4LEU8_EUTSA3.2e-2690.77Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015213mg PE=4 SV=1[more]
A0A0D3EDA4_BRAOL3.2e-2690.77Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078GQP9_BRANA3.2e-2690.77BnaC09g36200D protein OS=Brassica napus GN=BnaC09g36200D PE=4 SV=1[more]
M4CE04_BRARP4.2e-2689.23Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
Q8LBZ1_ARATH1.6e-2587.69At5g22875 OS=Arabidopsis thaliana GN=At5g22875 PE=2 SV=1[more]
BLAST of CmaCh20G005300.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G22875.18.0e-2987.69 unknown protein[more]
BLAST of CmaCh20G005300.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659130932|ref|XP_008465426.1|1.4e-2793.94PREDICTED: uncharacterized protein LOC103503042 [Cucumis melo][more]
gi|449456062|ref|XP_004145769.1|1.2e-2692.42PREDICTED: uncharacterized protein LOC101222012 [Cucumis sativus][more]
gi|567176676|ref|XP_006400796.1|4.6e-2690.77hypothetical protein EUTSA_v10015213mg [Eutrema salsugineum][more]
gi|685374923|ref|XP_009120627.1|6.0e-2689.23PREDICTED: uncharacterized protein LOC103845512 [Brassica rapa][more]
gi|18420614|ref|NP_568425.1|2.3e-2587.69uncharacterized protein [Arabidopsis thaliana][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0048573 photoperiodism, flowering
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh20G005300CmaCh20G005300gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh20G005300.1CmaCh20G005300.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G005300.1.three_prime_UTR.1CmaCh20G005300.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G005300.1.CDS.4CmaCh20G005300.1.CDS.4CDS
CmaCh20G005300.1.CDS.3CmaCh20G005300.1.CDS.3CDS
CmaCh20G005300.1.CDS.2CmaCh20G005300.1.CDS.2CDS
CmaCh20G005300.1.CDS.1CmaCh20G005300.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh20G005300.1.exon.4CmaCh20G005300.1.exon.4exon
CmaCh20G005300.1.exon.3CmaCh20G005300.1.exon.3exon
CmaCh20G005300.1.exon.2CmaCh20G005300.1.exon.2exon
CmaCh20G005300.1.exon.1CmaCh20G005300.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36070FAMILY NOT NAMEDcoord: 32..119
score: 1.2
NoneNo IPR availablePANTHERPTHR36070:SF1SUBFAMILY NOT NAMEDcoord: 32..119
score: 1.2