CmaCh20G003900 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTGTTTGTTGGCATAAACATGGCGATCCATGAAGCTCCATTAAGCATTTTAGCCTTCGTGGATCTTAAGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCAAAATTTTCAGAATTTCTTTTTCCTTCCCCCATTTTGTTAG ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTAATTTCTTTTTCCTTCCCCCATTTTGTTAG ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTAATTTCTTTTTCCTTCCCCCATTTTGTTAG MEEKWKLSKKESGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAATAATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAMLNFFFLPPFC
BLAST of CmaCh20G003900 vs. TrEMBL
Match: V7AES8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G062700g PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 9.8e-17 Identity = 67/110 (60.91%), Postives = 76/110 (69.09%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TrEMBL
Match: A0A0L9T7Y5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan238s004200 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16 Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TrEMBL
Match: A0A0S3SD64_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G201900 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16 Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TrEMBL
Match: A0A151TMG2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021840 PE=4 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16 Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TrEMBL
Match: A0A0D2QCJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G097500 PE=4 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15 Identity = 68/108 (62.96%), Postives = 76/108 (70.37%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2) HSP 1 Score: 81.6 bits (200), Expect = 3.3e-16 Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TAIR10
Match: AT1G07490.1 (AT1G07490.1 ROTUNDIFOLIA like 3) HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12 Identity = 60/112 (53.57%), Postives = 70/112 (62.50%), Query Frame = 1
BLAST of CmaCh20G003900 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5) HSP 1 Score: 47.0 bits (110), Expect = 9.1e-06 Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 1
BLAST of CmaCh20G003900 vs. NCBI nr
Match: gi|449450752|ref|XP_004143126.1| (PREDICTED: putative protein TPRXL [Cucumis sativus]) HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29 Identity = 91/108 (84.26%), Postives = 93/108 (86.11%), Query Frame = 1
BLAST of CmaCh20G003900 vs. NCBI nr
Match: gi|659128225|ref|XP_008464107.1| (PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo]) HSP 1 Score: 129.0 bits (323), Expect = 5.2e-27 Identity = 90/113 (79.65%), Postives = 94/113 (83.19%), Query Frame = 1
BLAST of CmaCh20G003900 vs. NCBI nr
Match: gi|593166460|ref|XP_007132050.1| (hypothetical protein PHAVU_011G062700g [Phaseolus vulgaris]) HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16 Identity = 67/110 (60.91%), Postives = 76/110 (69.09%), Query Frame = 1
BLAST of CmaCh20G003900 vs. NCBI nr
Match: gi|950942913|ref|XP_014493701.1| (PREDICTED: uncharacterized protein LOC106755977 [Vigna radiata var. radiata]) HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16 Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1
BLAST of CmaCh20G003900 vs. NCBI nr
Match: gi|1012357035|gb|KYP68220.1| (hypothetical protein KK1_021840 [Cajanus cajan]) HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16 Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |