CmaCh20G003900.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G003900.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr20 : 1873604 .. 1874119 (-)
Sequence length	345

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTGTTTGTTGGCATAAACATGGCGATCCATGAAGCTCCATTAAGCATTTTAGCCTTCGTGGATCTTAAGGTTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCAAAATTTTCAGAATTTCTTTTTCCTTCCCCCATTTTGTTAG

mRNA sequence

ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTAATTTCTTTTTCCTTCCCCCATTTTGTTAG

Coding sequence (CDS)

ATGGAAGAAAAATGGAAGCTTTCAAAGAAGGAATCGGGTTGTTCTTCTTCGTCCAAGTCTTTCTTCTCCAGAAGCGGTTCCACCAGAAGCACTTCCTCGAAACTACCATTGCTAAGAAGCTTATCACAAAAGCACACTCCTTCCTCCTCCGCCGCCGCCGCGACGGCCGCCACCTCTGGCAAATCCCCTTCCGATCTCCGCCGCAGCTCCTCCCAAAAAAACTCCTCCTCTTCATCCATTGGCCACAAATGTAGCAGCTTGGCTAAAGAGCAAAAGGCTAGATTTTACATCATGCGCCGATGTGTCGCTATGCTTAATTTCTTTTTCCTTCCCCCATTTTGTTAG

Protein sequence

MEEKWKLSKKESGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAATAATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAMLNFFFLPPFC

Homology

[Close]

BLAST of CmaCh20G003900.1 vs. TrEMBL
Match: V7AES8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G062700g PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.8e-17
Identity = 67/110 (60.91%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-----SSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAAT 60
           M+EKWK+SKKE+GCSS     S+KS FSRS STRS+SS  PLLRSLSQK           
Sbjct: 1   MDEKWKVSKKEAGCSSQASTSSTKSLFSRSCSTRSSSSNSPLLRSLSQK----------- 60

Query: 61  AATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
             +S  S + + RS SQKN    SIG KC+SLAKE KARFYIMRRCVAML
Sbjct: 61  --SSSTSKTSIPRSFSQKN---PSIGKKCTSLAKEHKARFYIMRRCVAML 94

[Close]

BLAST of CmaCh20G003900.1 vs. TrEMBL
Match: A0A0L9T7Y5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan238s004200 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-----SSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAAT 60
           M+EKWKLSKKE+GCSS     S+KS FSRS STR +SS  PLLRSLSQK           
Sbjct: 1   MDEKWKLSKKEAGCSSQNSTSSTKSLFSRSCSTRGSSSNSPLLRSLSQK----------- 60

Query: 61  AATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
             +S  S + + RS SQKN    SIG KC+SLAKE KARFYIMRRCVAML
Sbjct: 61  --SSSTSKTSIPRSFSQKN---PSIGKKCTSLAKEHKARFYIMRRCVAML 94

[Close]

BLAST of CmaCh20G003900.1 vs. TrEMBL
Match: A0A0S3SD64_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G201900 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-16
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-----SSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAAT 60
           M+EKWKLSKKE+GCSS     S+KS FSRS STR +SS  PLLRSLSQK           
Sbjct: 1   MDEKWKLSKKEAGCSSQNSTSSTKSLFSRSCSTRGSSSNSPLLRSLSQK----------- 60

Query: 61  AATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
             +S  S + + RS SQKN    SIG KC+SLAKE KARFYIMRRCVAML
Sbjct: 61  --SSSTSKTSIPRSFSQKN---PSIGKKCTSLAKEHKARFYIMRRCVAML 94

[Close]

BLAST of CmaCh20G003900.1 vs. TrEMBL
Match: A0A151TMG2_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_021840 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.9e-16
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAATAATSG 60
           M+EKWK+SKKE+G S+S+KS FSRS STR  SS  PLLRS+SQK             +S 
Sbjct: 1   MDEKWKVSKKEAGSSTSTKSLFSRSCSTRGPSSNSPLLRSVSQK-------------SSS 60

Query: 61  KSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
            S ++L RS SQKN    SIG KC+S+AKE KARFYIMRRCVAML
Sbjct: 61  TSKTNLPRSFSQKN---PSIGQKCTSIAKEHKARFYIMRRCVAML 89

[Close]

BLAST of CmaCh20G003900.1 vs. TrEMBL
Match: A0A0D2QCJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G097500 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 68/108 (62.96%), Postives = 76/108 (70.37%), Query Frame = 1


Query: 1   MEEKWKLSKKESG---CSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAATAA 60
           M+EKWKLSKKE+    CSSSSK    RS ST+S SSK PLLRS SQK++ SSS++     
Sbjct: 1   MDEKWKLSKKEASGTHCSSSSKFSLPRSFSTKSISSKSPLLRSSSQKNSCSSSSS----- 60

Query: 61  TSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
            S  S   L RS SQK    +SI  KCSSLAKEQKARFYIMRRCVAML
Sbjct: 61  -SSSSKCALPRSYSQK----TSISRKCSSLAKEQKARFYIMRRCVAML 98

[Close]

BLAST of CmaCh20G003900.1 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-16
Identity = 66/108 (61.11%), Postives = 83/108 (76.85%), Query Frame = 1


Query: 1   MEEKWKLSKKES-GCSSSSKSFFSRSGSTRSTSSKLPL-LRSLSQK-HTPSSSAAAATAA 60
           MEEKWKLSKK++   SSSSKS FSRS ST ++S+K P+ +RS S K   PSSS+++++++
Sbjct: 1   MEEKWKLSKKDTTASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSS 60

Query: 61  TSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
           +  +S S   R SS  +SSSSSI  K SSLAKEQKARFYIMRRCVAML
Sbjct: 61  SISRSFSRKERRSS--SSSSSSITQKYSSLAKEQKARFYIMRRCVAML 106

[Close]

BLAST of CmaCh20G003900.1 vs. TAIR10
Match: AT1G07490.1 (AT1G07490.1 ROTUNDIFOLIA like 3)

HSP 1 Score: 68.2 bits (165), Expect = 3.8e-12
Identity = 60/112 (53.57%), Postives = 70/112 (62.50%), Query Frame = 1


Query: 1   MEEKWKLSKKE------SGCSSSSKSFFSRSGSTRSTSSKLP-LLRSLSQKHTPSSSAAA 60
           M+EKW+LSKK+      S  S+SSKS FSRS ST ++SSK P  +RS S K +  SS   
Sbjct: 1   MDEKWRLSKKDALAASCSSSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCSVPSS--- 60

Query: 61  ATAATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
                   S S + RSSS+K   S  I  K SSLAKEQK RFYIMRRCVAML
Sbjct: 61  --------SSSSISRSSSKKEKGS--ITQKYSSLAKEQKGRFYIMRRCVAML 99

[Close]

BLAST of CmaCh20G003900.1 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 47.0 bits (110), Expect = 9.1e-06
Identity = 46/101 (45.54%), Postives = 58/101 (57.43%), Query Frame = 1


Query: 15  SSSSKSFFSRSGSTRSTS--SKLPLLR-SLSQKHTPSSSAAAATAA-------TSGKSPS 74
           SSSSK  F+RS ST+ TS  S  P+ R S S K T S S   + +        TS  S  
Sbjct: 37  SSSSKPVFTRSFSTKPTSYSSSEPIFRRSFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKC 96

Query: 75  DLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
            + RS SQK +S   +  KC ++AKE K+RFYIM+RCV ML
Sbjct: 97  SISRSLSQKGAS---VTRKCRNMAKEHKSRFYIMKRCVLML 134

[Close]

BLAST of CmaCh20G003900.1 vs. NCBI nr
Match: gi|449450752|ref|XP_004143126.1| (PREDICTED: putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 91/108 (84.26%), Postives = 93/108 (86.11%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-SSKSFFSRSGSTRSTSSKLPLLRSLSQK-HTPSSSAAAATAAT 60
           MEEKWK+SKKES  SS SSKS FSRSGSTRSTS+KLPLLRSLSQK HTPSSSA       
Sbjct: 1   MEEKWKVSKKESSSSSSSSKSIFSRSGSTRSTSAKLPLLRSLSQKQHTPSSSA------- 60

Query: 61  SGKSPSD-LRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
            GKSPSD LRRSSSQKN SSSSIGHKCSSLAKEQKARFYIMRRCVAML
Sbjct: 61  -GKSPSDNLRRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAML 100

[Close]

BLAST of CmaCh20G003900.1 vs. NCBI nr
Match: gi|659128225|ref|XP_008464107.1| (PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo])

HSP 1 Score: 129.0 bits (323), Expect = 5.2e-27
Identity = 90/113 (79.65%), Postives = 94/113 (83.19%), Query Frame = 1


Query: 1   MEEKWKLSKKE-----SGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQK-HTPSSSAAAA 60
           MEEKWK+SKKE     S  SSSSKS FSRSGSTRSTS+KLPLLRSLSQK HTPSSSA   
Sbjct: 1   MEEKWKVSKKESSSSSSSSSSSSKSIFSRSGSTRSTSAKLPLLRSLSQKQHTPSSSA--- 60

Query: 61  TAATSGKSPSD-LRRSSSQK-NSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
                GKSPS+ LRRSSSQK +SSSSSIGHKCSSLAKEQKARFYIMRRCVAML
Sbjct: 61  -----GKSPSENLRRSSSQKHSSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 105

[Close]

BLAST of CmaCh20G003900.1 vs. NCBI nr
Match: gi|593166460|ref|XP_007132050.1| (hypothetical protein PHAVU_011G062700g [Phaseolus vulgaris])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-16
Identity = 67/110 (60.91%), Postives = 76/110 (69.09%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-----SSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAAT 60
           M+EKWK+SKKE+GCSS     S+KS FSRS STRS+SS  PLLRSLSQK           
Sbjct: 1   MDEKWKVSKKEAGCSSQASTSSTKSLFSRSCSTRSSSSNSPLLRSLSQK----------- 60

Query: 61  AATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
             +S  S + + RS SQKN    SIG KC+SLAKE KARFYIMRRCVAML
Sbjct: 61  --SSSTSKTSIPRSFSQKN---PSIGKKCTSLAKEHKARFYIMRRCVAML 94

[Close]

BLAST of CmaCh20G003900.1 vs. NCBI nr
Match: gi|950942913|ref|XP_014493701.1| (PREDICTED: uncharacterized protein LOC106755977 [Vigna radiata var. radiata])

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 67/110 (60.91%), Postives = 75/110 (68.18%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSS-----SSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAAT 60
           M+EKWKLSKKE+GCSS     S+KS FSRS STR +SS  PLLRSLSQK           
Sbjct: 1   MDEKWKLSKKEAGCSSQNSTSSTKSLFSRSCSTRGSSSNSPLLRSLSQK----------- 60

Query: 61  AATSGKSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
             +S  S + + RS SQKN    SIG KC+SLAKE KARFYIMRRCVAML
Sbjct: 61  --SSSTSKTSIPRSFSQKN---PSIGKKCTSLAKEHKARFYIMRRCVAML 94

[Close]

BLAST of CmaCh20G003900.1 vs. NCBI nr
Match: gi|1012357035|gb|KYP68220.1| (hypothetical protein KK1_021840 [Cajanus cajan])

HSP 1 Score: 92.8 bits (229), Expect = 4.1e-16
Identity = 63/105 (60.00%), Postives = 74/105 (70.48%), Query Frame = 1


Query: 1   MEEKWKLSKKESGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHTPSSSAAAATAATSG 60
           M+EKWK+SKKE+G S+S+KS FSRS STR  SS  PLLRS+SQK             +S 
Sbjct: 1   MDEKWKVSKKEAGSSTSTKSLFSRSCSTRGPSSNSPLLRSVSQK-------------SSS 60

Query: 61  KSPSDLRRSSSQKNSSSSSIGHKCSSLAKEQKARFYIMRRCVAML 106
            S ++L RS SQKN    SIG KC+S+AKE KARFYIMRRCVAML
Sbjct: 61  TSKTNLPRSFSQKN---PSIGQKCTSIAKEHKARFYIMRRCVAML 89

The following BLAST results are available for this feature:

BLAST of CmaCh20G003900.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh20G003900.1 vs. TrEMBL


Match Name	E-value	Identity	Description
V7AES8_PHAVU	9.8e-17	60.91	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G062700g PE=4 SV=1	[more]
A0A0L9T7Y5_PHAAN	1.3e-16	60.91	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan238s004200 PE=4 SV=1	[more]
A0A0S3SD64_PHAAN	1.3e-16	60.91	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.06G201900 PE=...	[more]
A0A151TMG2_CAJCA	2.9e-16	60.00	Uncharacterized protein OS=Cajanus cajan GN=KK1_021840 PE=4 SV=1	[more]
A0A0D2QCJ8_GOSRA	2.4e-15	62.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G097500 PE=4 SV=1	[more]

BLAST of CmaCh20G003900.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29125.1	3.3e-16	61.11	ROTUNDIFOLIA like 2	[more]
AT1G07490.1	3.8e-12	53.57	ROTUNDIFOLIA like 3	[more]
AT5G59510.1	9.1e-06	45.54	ROTUNDIFOLIA like 5	[more]

BLAST of CmaCh20G003900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449450752\|ref\|XP_004143126.1\|	2.5e-29	84.26	PREDICTED: putative protein TPRXL [Cucumis sativus]	[more]
gi\|659128225\|ref\|XP_008464107.1\|	5.2e-27	79.65	PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo]	[more]
gi\|593166460\|ref\|XP_007132050.1\|	1.4e-16	60.91	hypothetical protein PHAVU_011G062700g [Phaseolus vulgaris]	[more]
gi\|950942913\|ref\|XP_014493701.1\|	1.8e-16	60.91	PREDICTED: uncharacterized protein LOC106755977 [Vigna radiata var. radiata]	[more]
gi\|1012357035\|gb\|KYP68220.1\|	4.1e-16	60.00	hypothetical protein KK1_021840 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G003900	CmaCh20G003900	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G003900.1	CmaCh20G003900.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G003900.1.CDS.2	CmaCh20G003900.1.CDS.2	CDS
CmaCh20G003900.1.CDS.1	CmaCh20G003900.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G003900.1.exon.2	CmaCh20G003900.1.exon.2	exon
CmaCh20G003900.1.exon.1	CmaCh20G003900.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 89..105 score: 1.5
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 38..105 score: 4.1
None	No IPR available	PANTHER	PTHR33102:SF3	DVL13-RELATED	coord: 38..105 score: 4.1