Carg26580 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26580
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	ROTUNDIFOLIA like 2
Location	Cucurbita_argyrosperma_scaffold_420 : 2097 .. 2402 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGTTAAGAAGCTTATCCCATAAGCACACTCCCTCCGCCGCCGCCGCCTCCTCGTCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAGAAAAACCCCTCCATTGGCCACAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGACGATGTGTTGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

mRNA sequence

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGTTAAGAAGCTTATCCCATAAGCACACTCCCTCCGCCGCCGCCGCCTCCTCGTCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAGAAAAACCCCTCCATTGGCCACAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGACGATGTGTTGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

Coding sequence (CDS)

ATGGAAGAAAAATGGAAGCTTTCCAGAAAGGAATCTTCTTCTTCTTCTTCTAAGTCCTTCTTCTCCAGAACCTCTTCCTCCAAGCTGCCATTGTTAAGAAGCTTATCCCATAAGCACACTCCCTCCGCCGCCGCCGCCTCCTCGTCCGCCAAGTCCCCCTCCGATCTCCGCCGCAGCTCCTCCCAGAAAAACCCCTCCATTGGCCACAAATGCAGCAGCTTGGCTAAAGAACAAAAGGCCAGATTTTACATCATGCGACGATGTGTTGCAATGCTTGTCTGTTGGCATAAACATGGCGATCCATGA

Protein sequence

MEEKWKLSRKESSSSSSKSFFSRTSSSKLPLLRSLSHKHTPSAAAASSSAKSPSDLRRSSSQKNPSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP

Homology

[Close]

BLAST of Carg26580 vs. NCBI nr
Match: XP_004143126.1 (PREDICTED: putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 6.4e-17
Identity = 67/109 (61.47%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MEEKWKLSR-------KXXXXXXXXXXXXXXXXXXLPLLRSLSHK-HTPSXXXXXXXXXX 60
           MEEKWK+S+        XXXXXXXXXXXX      LPLLRSLS K HTPS          
Sbjct: 1   MEEKWKVSKXXXXXXXXXXXXXXXXXXXXRSTSAKLPLLRSLSQKQHTPSSSAGKSPSDN 60

Query: 61  XXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
                         IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 61  LRRSSSQKNPSSSSIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 109

[Close]

BLAST of Carg26580 vs. NCBI nr
Match: XP_022986968.1 (uncharacterized protein LOC111484546 [Cucurbita maxima])

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 78/114 (68.42%), Postives = 79/114 (69.30%), Query Frame = 0


Query: 1   MEEKWKLSRK------XXXXXXXXXXXXXXXXXXLPLLRSLSHKH-------TPSXXXXX 60
           MEEKWKLS+K                        LPLLRSLS KH          XXXXX
Sbjct: 1   MEEKWKLSKKESGCSSSSKSFFSRSGSTRSTSSKLPLLRSLSQKHXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
           XXXXXXXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 114

[Close]

BLAST of Carg26580 vs. NCBI nr
Match: XP_008464107.1 (PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-13
Identity = 90/114 (78.95%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MEEKWKLSR-----------KXXXXXXXXXXXXXXXXXXLPLLRSLSHK-HTP-SXXXXX 60
           MEEKWK+S+            XXXXXXXXXXXXXXX   LPLLRSLS K HTP S  XXX
Sbjct: 1   MEEKWKVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKLPLLRSLSQKQHTPSSSAXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
           XXXXXXXXXXXXXXXXXXX  HKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 114

[Close]

BLAST of Carg26580 vs. NCBI nr
Match: XP_022148450.1 (probable basic-leucine zipper transcription factor L [Momordica charantia])

HSP 1 Score: 82.8 bits (203), Expect = 7.3e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 67  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
           IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 94  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 128

[Close]

BLAST of Carg26580 vs. NCBI nr
Match: XP_022944407.1 (putative protein TPRXL [Cucurbita moschata])

HSP 1 Score: 82.8 bits (203), Expect = 7.3e-13
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 67  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
           IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 81  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 115

[Close]

BLAST of Carg26580 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 68.6 bits (166), Expect = 2.6e-12
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 70  KCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 101
           K SSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 84  KYSSLAKEQKARFYIMRRCVAMLVCWHKHGD 114

[Close]

BLAST of Carg26580 vs. TAIR10
Match: AT1G07490.1 (ROTUNDIFOLIA like 3)

HSP 1 Score: 62.4 bits (150), Expect = 1.9e-10
Identity = 28/32 (87.50%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 67  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 99
           I  K SSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 74  ITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

[Close]

BLAST of Carg26580 vs. TAIR10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5)

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-09
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 67  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKH 99
           +  KC ++AKE K+RFYIM+RCV MLVCWHKH
Sbjct: 109 VTRKCRNMAKEHKSRFYIMKRCVLMLVCWHKH 140

[Close]

BLAST of Carg26580 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 20/29 (68.97%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 68 GHKCSSLAKEQKARFYIMRRCVAMLVCWH 97
          G KCS + K+Q+A+FYI+RRC+AMLVCWH
Sbjct: 16 GQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

[Close]

BLAST of Carg26580 vs. TAIR10
Match: AT3G46613.1 (ROTUNDIFOLIA like 4)

HSP 1 Score: 54.7 bits (130), Expect = 3.9e-08
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 70  KCSSLAKEQKARFYIMRRCVAMLVCWHKH 99
           KC  +AKE K+RFYI++RCV MLVCWHKH
Sbjct: 115 KCFKVAKEHKSRFYIIKRCVLMLVCWHKH 143

[Close]

BLAST of Carg26580 vs. TrEMBL
Match: tr|A0A1S3CKQ4|A0A1S3CKQ4_CUCME (uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC103502069 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.5e-14
Identity = 90/114 (78.95%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MEEKWKLSR-----------KXXXXXXXXXXXXXXXXXXLPLLRSLSHK-HTP-SXXXXX 60
           MEEKWK+S+            XXXXXXXXXXXXXXX   LPLLRSLS K HTP S  XXX
Sbjct: 1   MEEKWKVSKXXXXXXXXXXXXXXXXXXXXXXXXXXXSAKLPLLRSLSQKQHTPSSSAXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 102
           XXXXXXXXXXXXXXXXXXX  HKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDP 114

[Close]

BLAST of Carg26580 vs. TrEMBL
Match: tr|V4SM00|V4SM00_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030229mg PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.4e-12
Identity = 67/101 (66.34%), Postives = 69/101 (68.32%), Query Frame = 0


Query: 1   MEEKWKLSRKXXXXXXXXXXXXXXXXXXLPLLRSLSHKHTPS-XXXXXXXXXXXXXXXXX 60
           M+EKWKLS+K                  LP  RS S K T S      XXXXXXXXXXXX
Sbjct: 1   MDEKWKLSKK----DGSCSSSHASSSHKLPFTRSFSTKSTSSKSPLLQXXXXXXXXXXXX 60

Query: 61  XXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 101
           XXXXXXXI  KCSSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 61  XXXXXXXISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 97

[Close]

BLAST of Carg26580 vs. TrEMBL
Match: tr|A0A2H5NCY6|A0A2H5NCY6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_033790 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.1e-12
Identity = 66/101 (65.35%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 1   MEEKWKLSRKXXXXXXXXXXXXXXXXXXLPLLRSLSHKHTPS-XXXXXXXXXXXXXXXXX 60
           M+EKWKLS+K                  LP  RS S K T S      XXXXXXXXXXXX
Sbjct: 1   MDEKWKLSKK----DGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQXXXXXXXXXXXX 60

Query: 61  XXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 101
           XXXXXXX   KCSSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 61  XXXXXXXXSRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 97

[Close]

BLAST of Carg26580 vs. TrEMBL
Match: tr|B9GJA2|B9GJA2_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G242800v3 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.0e-11
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 67  IGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 101
           I HKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 57  ISHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 90

[Close]

BLAST of Carg26580 vs. TrEMBL
Match: tr|A0A067FZP7|A0A067FZP7_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037105mg PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 65/101 (64.36%), Postives = 67/101 (66.34%), Query Frame = 0


Query: 1   MEEKWKLSRKXXXXXXXXXXXXXXXXXXLPLLRSLSHKHTPS-XXXXXXXXXXXXXXXXX 60
           M+EKWKLS+K                  LP  RS S K T S      XXXXXXXXXXXX
Sbjct: 1   MDEKWKLSKK----DGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQXXXXXXXXXXXX 60

Query: 61  XXXXXXXIGHKCSSLAKEQKARFYIMRRCVAMLVCWHKHGD 101
           XXXXXXXI  KC  LAKEQKARFYIMRRCVAMLVCWHKHGD
Sbjct: 61  XXXXXXXISRKCRGLAKEQKARFYIMRRCVAMLVCWHKHGD 97

The following BLAST results are available for this feature:

BLAST of Carg26580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143126.1	6.4e-17	61.47	PREDICTED: putative protein TPRXL [Cucumis sativus]	[more]
XP_022986968.1	3.5e-15	68.42	uncharacterized protein LOC111484546 [Cucurbita maxima]	[more]
XP_008464107.1	1.1e-13	78.95	PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo]	[more]
XP_022148450.1	7.3e-13	100.00	probable basic-leucine zipper transcription factor L [Momordica charantia]	[more]
XP_022944407.1	7.3e-13	100.00	putative protein TPRXL [Cucurbita moschata]	[more]

BLAST of Carg26580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29125.1	2.6e-12	96.77	ROTUNDIFOLIA like 2	[more]
AT1G07490.1	1.9e-10	87.50	ROTUNDIFOLIA like 3	[more]
AT5G59510.1	4.6e-09	68.75	ROTUNDIFOLIA like 5	[more]
AT2G36985.1	3.9e-08	68.97	DVL family protein	[more]
AT3G46613.1	3.9e-08	72.41	ROTUNDIFOLIA like 4	[more]

BLAST of Carg26580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg26580 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CKQ4\|A0A1S3CKQ4_CUCME	7.5e-14	78.95	uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC10350206...	[more]
tr\|V4SM00\|V4SM00_9ROSI	2.4e-12	66.34	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030229mg PE=4 ...	[more]
tr\|A0A2H5NCY6\|A0A2H5NCY6_CITUN	9.1e-12	65.35	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_033790 PE=4 SV=1	[more]
tr\|B9GJA2\|B9GJA2_POPTR	2.0e-11	97.06	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G242800v3 PE=...	[more]
tr\|A0A067FZP7\|A0A067FZP7_CITSI	2.7e-11	64.36	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g037105mg PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR012552	DVL

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26580-RA	Carg26580-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012552	DVL	PFAM	PF08137	DVL	coord: 76..94 e-value: 1.8E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..72
None	No IPR available	PANTHER	PTHR33102:SF3	DVL13-RELATED	coord: 40..100
None	No IPR available	PANTHER	PTHR33102	FAMILY NOT NAMED	coord: 40..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26580	MELO3C025900	Melon (DHL92) v3.5.1	carmeB0901
Carg26580	ClCG02G019980	Watermelon (Charleston Gray)	carwcgB0894
Carg26580	CSPI06G14320	Wild cucumber (PI 183967)	carcpiB0953
Carg26580	Cucsa.138810	Cucumber (Gy14) v1	carcgyB1033
Carg26580	CmaCh02G007900	Cucurbita maxima (Rimu)	carcmaB1257
Carg26580	CmaCh20G003900	Cucurbita maxima (Rimu)	carcmaB1256
Carg26580	Cp4.1LG05g09300	Cucurbita pepo (Zucchini)	carcpeB1265
Carg26580	MELO3C025900.2	Melon (DHL92) v3.6.1	carmedB0909
Carg26580	Bhi10G000585	Wax gourd	carwgoB1058

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None