Carg12382 (gene) Silver-seed gourd

NameCarg12382
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionROTUNDIFOLIA like 2
LocationCucurbita_argyrosperma_scaffold_074 : 667529 .. 667843 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGAATTGGAATCTATCAAAGAAGGAAGGTTCAGGAAGTAGTTACCAGTCTTCTACGAATCCCAAGTCGTCGTTCACAAGGAGTGGTTCCACCACCAAATCGCCATTACTGCGATGTTCTTCACAGAGAACTTTCCCAGCTTCCACTTCCAAGACCCCCAACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCAGCAGGACGTAAATACAGCAGCTTAGCTAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTGGCGATGCTCGTTTGTTGGCACAAGCATGGCGATTCGTAA

mRNA sequence

ATGGACGAGAATTGGAATCTATCAAAGAAGGAAGGTTCAGGAAGTAGTTACCAGTCTTCTACGAATCCCAAGTCGTCGTTCACAAGGAGTGGTTCCACCACCAAATCGCCATTACTGCGATGTTCTTCACAGAGAACTTTCCCAGCTTCCACTTCCAAGACCCCCAACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCAGCAGGACGTAAATACAGCAGCTTAGCTAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTGGCGATGCTCGTTTGTTGGCACAAGCATGGCGATTCGTAA

Coding sequence (CDS)

ATGGACGAGAATTGGAATCTATCAAAGAAGGAAGGTTCAGGAAGTAGTTACCAGTCTTCTACGAATCCCAAGTCGTCGTTCACAAGGAGTGGTTCCACCACCAAATCGCCATTACTGCGATGTTCTTCACAGAGAACTTTCCCAGCTTCCACTTCCAAGACCCCCAACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCAGCAGGACGTAAATACAGCAGCTTAGCTAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTGGCGATGCTCGTTTGTTGGCACAAGCATGGCGATTCGTAA

Protein sequence

MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPRSYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
BLAST of Carg12382 vs. NCBI nr
Match: XP_022948433.1 (uncharacterized protein LOC111452118 [Cucurbita moschata] >XP_022997686.1 uncharacterized protein LOC111492575 [Cucurbita maxima] >XP_023523193.1 uncharacterized protein LOC111787458 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 200.3 bits (508), Expect = 3.2e-48
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPR 60
           MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPR
Sbjct: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPR 60

Query: 61  SYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
           SYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  SYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 104

BLAST of Carg12382 vs. NCBI nr
Match: XP_022964705.1 (uncharacterized protein LOC111464706 [Cucurbita moschata] >XP_023521043.1 uncharacterized protein LOC111784640 [Cucurbita pepo subsp. pepo] >XP_023519187.1 uncharacterized protein LOC111782636 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 7.5e-37
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPR 60
           MDE WN SKKEGSGSSY  S    SSF RSGST+KSPLLRCSSQ++FPAS SK+P+DLPR
Sbjct: 1   MDEKWNPSKKEGSGSSYHHS----SSFIRSGSTSKSPLLRCSSQKSFPASNSKSPHDLPR 60

Query: 61  SYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
           SYSQK+SSS GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  SYSQKNSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 100

BLAST of Carg12382 vs. NCBI nr
Match: XP_022155122.1 (uncharacterized protein LOC111022262 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-22
Identity = 68/104 (65.38%), Postives = 71/104 (68.27%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLPR 60
           MDE WN SKKEGSG SY +ST+ KSSFTRSGST+KSPLLRC                   
Sbjct: 1   MDEKWNPSKKEGSG-SYHASTSAKSSFTRSGSTSKSPLLRCXXXXXXXXXXXXXXXXXXX 60

Query: 61  SYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
                   S GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXXXXXSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 103

BLAST of Carg12382 vs. NCBI nr
Match: XP_004153482.1 (PREDICTED: uncharacterized protein LOC101207628 [Cucumis sativus] >KGN65741.1 hypothetical protein Csa_1G524140 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 1.2e-13
Identity = 59/106 (55.66%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSY-QSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLP 60
           MDE WNLSKKEGSGSSY  SSTN                                     
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RSYSQKSSS-SAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
                KSSS S GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXXKSSSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of Carg12382 vs. NCBI nr
Match: XP_008457457.1 (PREDICTED: uncharacterized protein LOC103497141 [Cucumis melo] >XP_016902125.1 PREDICTED: uncharacterized protein LOC103497141 [Cucumis melo])

HSP 1 Score: 84.3 bits (207), Expect = 2.6e-13
Identity = 58/106 (54.72%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSY-QSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLP 60
           MDE WNLSKKEGSGSSY  SSTN                                     
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RSYSQKS-SSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
                KS S+S GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXXKSTSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of Carg12382 vs. TAIR10
Match: AT2G29125.1 (ROTUNDIFOLIA like 2)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-13
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 0

Query: 72  RKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
           +KYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 83  QKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

BLAST of Carg12382 vs. TAIR10
Match: AT1G07490.1 (ROTUNDIFOLIA like 3)

HSP 1 Score: 63.9 bits (154), Expect = 6.6e-11
Identity = 29/33 (87.88%), Postives = 30/33 (90.91%), Query Frame = 0

Query: 69  SAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKH 102
           S  +KYSSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 73  SITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

BLAST of Carg12382 vs. TAIR10
Match: AT5G59510.1 (ROTUNDIFOLIA like 5)

HSP 1 Score: 59.3 bits (142), Expect = 1.6e-09
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 37  PLLRCSSQRTFPASTSKTPN-DLPRSYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAML 96
           P L  S     P  TS T    + RS SQK  +S  RK  ++AKE K+RFYIM+RCV ML
Sbjct: 76  PFLSRSGSTKCPVDTSSTSKCSISRSLSQK-GASVTRKCRNMAKEHKSRFYIMKRCVLML 135

Query: 97  VCWHKH 102
           VCWHKH
Sbjct: 136 VCWHKH 140

BLAST of Carg12382 vs. TAIR10
Match: AT3G55515.1 (ROTUNDIFOLIA like 7)

HSP 1 Score: 50.8 bits (120), Expect = 5.8e-07
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 0

Query: 72  RKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
           RK   L KEQ+ARFYIMRRCV ML+CW  H ++
Sbjct: 42  RKCGRLVKEQRARFYIMRRCVVMLICWTDHNNN 74

BLAST of Carg12382 vs. TAIR10
Match: AT2G36985.1 (DVL family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.7e-06
Identity = 19/29 (65.52%), Postives = 26/29 (89.66%), Query Frame = 0

Query: 71  GRKYSSLAKEQKARFYIMRRCVAMLVCWH 100
           G+K S + K+Q+A+FYI+RRC+AMLVCWH
Sbjct: 16  GQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

BLAST of Carg12382 vs. TrEMBL
Match: tr|A0A0A0M0J4|A0A0A0M0J4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G524140 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-14
Identity = 59/106 (55.66%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSY-QSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLP 60
           MDE WNLSKKEGSGSSY  SSTN                                     
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RSYSQKSSS-SAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
                KSSS S GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXXKSSSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of Carg12382 vs. TrEMBL
Match: tr|A0A1S3C552|A0A1S3C552_CUCME (uncharacterized protein LOC103497141 OS=Cucumis melo OX=3656 GN=LOC103497141 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 58/106 (54.72%), Postives = 59/106 (55.66%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSY-QSSTNPKSSFTRSGSTTKSPLLRCSSQRTFPASTSKTPNDLP 60
           MDE WNLSKKEGSGSSY  SSTN                                     
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  RSYSQKS-SSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
                KS S+S GRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXXKSTSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of Carg12382 vs. TrEMBL
Match: tr|A0A2H5NCY6|A0A2H5NCY6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_033790 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 58/108 (53.70%), Postives = 64/108 (59.26%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGST----TKSPLLRCSSQRTFPASTSKTPN 60
           MDE W LSKK+GS SS  +S++ K  FTRS ST    +KSPLL+                
Sbjct: 1   MDEKWKLSKKDGSCSSSHASSSNKLPFTRSFSTKSTSSKSPLLQXXXXXXXXXXXXXXXX 60

Query: 61  DLPRSYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
               S          RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXXS----------RKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 98

BLAST of Carg12382 vs. TrEMBL
Match: tr|V4SM00|V4SM00_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030229mg PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.9e-13
Identity = 58/108 (53.70%), Postives = 64/108 (59.26%), Query Frame = 0

Query: 1   MDENWNLSKKEGSGSSYQSSTNPKSSFTRSGST----TKSPLLRCSSQRTFPASTSKTPN 60
           MDE W LSKK+GS SS  +S++ K  FTRS ST    +KSPLL+                
Sbjct: 1   MDEKWKLSKKDGSCSSSHASSSHKLPFTRSFSTKSTSSKSPLLQXXXXXXXXXXXXXXXX 60

Query: 61  DLPRSYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
               S          RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  XXXIS----------RKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 98

BLAST of Carg12382 vs. TrEMBL
Match: tr|A0A067L1G2|A0A067L1G2_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02962 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.5e-13
Identity = 42/47 (89.36%), Postives = 43/47 (91.49%), Query Frame = 0

Query: 58  LPRSYSQKSSSSAGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105
           LPRSYSQK +SS  RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 60  LPRSYSQK-NSSISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022948433.13.2e-48100.00uncharacterized protein LOC111452118 [Cucurbita moschata] >XP_022997686.1 unchar... [more]
XP_022964705.17.5e-3783.65uncharacterized protein LOC111464706 [Cucurbita moschata] >XP_023521043.1 unchar... [more]
XP_022155122.11.1e-2265.38uncharacterized protein LOC111022262 [Momordica charantia][more]
XP_004153482.11.2e-1355.66PREDICTED: uncharacterized protein LOC101207628 [Cucumis sativus] >KGN65741.1 hy... [more]
XP_008457457.12.6e-1354.72PREDICTED: uncharacterized protein LOC103497141 [Cucumis melo] >XP_016902125.1 P... [more]
Match NameE-valueIdentityDescription
AT2G29125.11.8e-1396.97ROTUNDIFOLIA like 2[more]
AT1G07490.16.6e-1187.88ROTUNDIFOLIA like 3[more]
AT5G59510.11.6e-0953.03ROTUNDIFOLIA like 5[more]
AT3G55515.15.8e-0763.64ROTUNDIFOLIA like 7[more]
AT2G36985.11.7e-0665.52DVL family protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0M0J4|A0A0A0M0J4_CUCSA7.7e-1455.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G524140 PE=4 SV=1[more]
tr|A0A1S3C552|A0A1S3C552_CUCME1.7e-1354.72uncharacterized protein LOC103497141 OS=Cucumis melo OX=3656 GN=LOC103497141 PE=... [more]
tr|A0A2H5NCY6|A0A2H5NCY6_CITUN1.7e-1353.70Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_033790 PE=4 SV=1[more]
tr|V4SM00|V4SM00_9ROSI2.9e-1353.70Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10030229mg PE=4 ... [more]
tr|A0A067L1G2|A0A067L1G2_JATCU6.5e-1389.36Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_02962 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg12382-RACarg12382-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 79..97
e-value: 1.9E-12
score: 46.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..75
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 35..104
NoneNo IPR availablePANTHERPTHR33102:SF3DVL13-RELATEDcoord: 35..104

The following gene(s) are paralogous to this gene:

None