CmaCh13G001150 (gene) Cucurbita maxima (Rimu)

NameCmaCh13G001150
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionROTUNDIFOLIA like 2
LocationCma_Chr13 : 786879 .. 787181 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGAAATGGAATCCACCAAAGAAGGAAGGTTCAGGAAGTAGTTACCACCATTCTTCATCGTTCATGAGGAGTGGCTCGACCTCCAAATCGCCATTGTTGCGATGTTCTTCACAGAAAAGCTTCCCAGCTTCCAATTCCAAGAGCCCCCACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCCATAGGAAGAAAGTACAGCAGCTTAGCCAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTTGCAATGCTCGTCTGTTGGCACAAACATGGCGATTCGTAA

mRNA sequence

ATGGACGAGAAATGGAATCCACCAAAGAAGGAAGGTTCAGGAAGTAGTTACCACCATTCTTCATCGTTCATGAGGAGTGGCTCGACCTCCAAATCGCCATTGTTGCGATGTTCTTCACAGAAAAGCTTCCCAGCTTCCAATTCCAAGAGCCCCCACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCCATAGGAAGAAAGTACAGCAGCTTAGCCAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTTGCAATGCTCGTCTGTTGGCACAAACATGGCGATTCGTAA

Coding sequence (CDS)

ATGGACGAGAAATGGAATCCACCAAAGAAGGAAGGTTCAGGAAGTAGTTACCACCATTCTTCATCGTTCATGAGGAGTGGCTCGACCTCCAAATCGCCATTGTTGCGATGTTCTTCACAGAAAAGCTTCCCAGCTTCCAATTCCAAGAGCCCCCACGATCTCCCTCGAAGTTACTCGCAGAAGAGCTCTTCTTCCATAGGAAGAAAGTACAGCAGCTTAGCCAAGGAACAGAAGGCCCGATTCTACATCATGAGACGCTGCGTTGCAATGCTCGTCTGTTGGCACAAACATGGCGATTCGTAA

Protein sequence

MDEKWNPPKKEGSGSSYHHSSSFMRSGSTSKSPLLRCSSQKSFPASNSKSPHDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
BLAST of CmaCh13G001150 vs. TrEMBL
Match: A0A0A0M0J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524140 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.8e-41
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSS-----SFMRSGSTSKSPLLRCSSQKSFPASNSKSPHDLP 60
           MDEKWN  KKEGSGSSYHHSS     SF+RSGSTSKSPLLRCSSQKS P+SNSK+PHDLP
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAKSSFLRSGSTSKSPLLRCSSQKSIPSSNSKNPHDLP 60

Query: 61  RSYSQKSSS-SIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           RSYSQKSSS SIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  RSYSQKSSSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of CmaCh13G001150 vs. TrEMBL
Match: A0A067L1G2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02962 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-24
Identity = 79/111 (71.17%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFMRSGST-----SKSPLL------RCSSQKSFPASNSK 60
           MDEKW P KKEGS SS   SSSF+RS ST     SKSPLL      R SS KS   SN+K
Sbjct: 1   MDEKWKPSKKEGSSSS---SSSFVRSFSTKSSSSSKSPLLSSSSLKRSSSLKSSSPSNNK 60

Query: 61  SPHDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
            P  LPRSYSQK+SS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  CP--LPRSYSQKNSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105

BLAST of CmaCh13G001150 vs. TrEMBL
Match: B9S3H4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0734910 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.6e-23
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFMRSGSTSKSPLLRCSSQK--SFPASNSKSPHD----- 60
           MDEKW P KKEGS S      SF    S+SKSPLLR SS K  S P+S+S S ++     
Sbjct: 1   MDEKWKPSKKEGSSSFVR---SFSTKSSSSKSPLLRSSSLKISSSPSSSSSSSNNNNKCP 60

Query: 61  LPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           LPRSYSQKSSS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  LPRSYSQKSSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 103

BLAST of CmaCh13G001150 vs. TrEMBL
Match: A0A061H013_THECC (ROTUNDIFOLIA like 4 (Fragment) OS=Theobroma cacao GN=TCM_041800 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 76/109 (69.72%), Postives = 80/109 (73.39%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSG----SSYHHSSSFMRSGST----SKSPLLRCSSQKSF-PASNSKSP 60
           MDEKW   KKE SG    SS    SS  RS ST    SKSPLLR SSQKS   +S+S S 
Sbjct: 49  MDEKWKISKKEASGIHCSSSSSKFSSLTRSFSTKSISSKSPLLRSSSQKSSCSSSSSSSK 108

Query: 61  HDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           + LPRS+SQKSSS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 109 YPLPRSFSQKSSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 156

BLAST of CmaCh13G001150 vs. TrEMBL
Match: A0A0D2QCJ8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G097500 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 74/109 (67.89%), Postives = 78/109 (71.56%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFM--RSGST----SKSPLLRCSSQK---SFPASNSKSP 60
           MDEKW   KKE SG+    SS F   RS ST    SKSPLLR SSQK   S  +S+S S 
Sbjct: 1   MDEKWKLSKKEASGTHCSSSSKFSLPRSFSTKSISSKSPLLRSSSQKNSCSSSSSSSSSK 60

Query: 61  HDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
             LPRSYSQK+S  I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  CALPRSYSQKTS--ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 107

BLAST of CmaCh13G001150 vs. TAIR10
Match: AT2G29125.1 (AT2G29125.1 ROTUNDIFOLIA like 2)

HSP 1 Score: 97.8 bits (242), Expect = 4.0e-21
Identity = 68/115 (59.13%), Postives = 79/115 (68.70%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFMRSGSTS----KSPL-LRCSSQK-SFPASNSKSPHD- 60
           M+EKW   KK+ + SS    S F RS STS    KSP+ +R SS K S P+S+S S    
Sbjct: 1   MEEKWKLSKKDTTASSSSSKSKFSRSFSTSASSTKSPIFVRSSSTKCSVPSSSSSSSSSS 60

Query: 61  -LPRSYSQK-------SSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
            + RS+S+K       SSSSI +KYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  SISRSFSRKERRSSSSSSSSITQKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 115

BLAST of CmaCh13G001150 vs. TAIR10
Match: AT1G07490.1 (AT1G07490.1 ROTUNDIFOLIA like 3)

HSP 1 Score: 86.7 bits (213), Expect = 9.1e-18
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSS---------SFMRSGSTSKSP-LLRCSSQK-SFPASNSK 60
           MDEKW   KK+   +S   SS         SF  S S+SK+P  +R SS K S P+S+S 
Sbjct: 1   MDEKWRLSKKDALAASCSSSSTSSKSKFSRSFSTSASSSKAPAFVRSSSTKCSVPSSSSS 60

Query: 61  SPHDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKH 98
           S   + RS S+K   SI +KYSSLAKEQK RFYIMRRCVAMLVCWHKH
Sbjct: 61  S---ISRSSSKKEKGSITQKYSSLAKEQKGRFYIMRRCVAMLVCWHKH 105

BLAST of CmaCh13G001150 vs. TAIR10
Match: AT5G59510.1 (AT5G59510.1 ROTUNDIFOLIA like 5)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-10
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 1

Query: 22  SFMRSGSTSKSPLLRCSSQKSFPA-SNSKSPHDLPRSYSQKSSSSIGRKYSSLAKEQKAR 81
           SF    ++SKSP L  S     P  ++S S   + RS SQK +S + RK  ++AKE K+R
Sbjct: 65  SFSAKPTSSKSPFLSRSGSTKCPVDTSSTSKCSISRSLSQKGAS-VTRKCRNMAKEHKSR 124

Query: 82  FYIMRRCVAMLVCWHKH 98
           FYIM+RCV MLVCWHKH
Sbjct: 125 FYIMKRCVLMLVCWHKH 140

BLAST of CmaCh13G001150 vs. TAIR10
Match: AT3G46613.1 (AT3G46613.1 ROTUNDIFOLIA like 4)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-08
Identity = 39/90 (43.33%), Postives = 47/90 (52.22%), Query Frame = 1

Query: 8   PKKEGSGSSYHHSSSFMRSGSTSKSPLLRCSSQKSFPASNSKSPHDLPRSYSQKSSSSIG 67
           P    S S      SF     TSKS LL  S      A  S     L R  S+K +S  G
Sbjct: 55  PSSSSSSSDLIFRRSFSAKPKTSKSLLLSRSCSTKSSADLSSKSSSLSRILSKKGASVTG 114

Query: 68  RKYSSLAKEQKARFYIMRRCVAMLVCWHKH 98
           + +  +AKE K+RFYI++RCV MLVCWHKH
Sbjct: 115 KCFK-VAKEHKSRFYIIKRCVLMLVCWHKH 143

BLAST of CmaCh13G001150 vs. TAIR10
Match: AT2G36985.1 (AT2G36985.1 DVL family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.2e-06
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1

Query: 65 SIGRKYSSLAKEQKARFYIMRRCVAMLVCWH 96
          + G+K S + K+Q+A+FYI+RRC+AMLVCWH
Sbjct: 14 TFGQKCSHVVKKQRAKFYILRRCIAMLVCWH 44

BLAST of CmaCh13G001150 vs. NCBI nr
Match: gi|659115242|ref|XP_008457457.1| (PREDICTED: uncharacterized protein LOC103497141 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 2.5e-41
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSS-----SFMRSGSTSKSPLLRCSSQKSFPASNSKSPHDLP 60
           MDEKWN  KKEGSGSSYHHSS     SF+RSGSTSKSPLLRCSSQKSFP+SNSK+PHDLP
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAKSSFLRSGSTSKSPLLRCSSQKSFPSSNSKNPHDLP 60

Query: 61  RSYSQKS-SSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           RSYSQKS S+SIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  RSYSQKSTSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of CmaCh13G001150 vs. NCBI nr
Match: gi|449472053|ref|XP_004153482.1| (PREDICTED: uncharacterized protein LOC101207628 [Cucumis sativus])

HSP 1 Score: 175.3 bits (443), Expect = 5.5e-41
Identity = 94/106 (88.68%), Postives = 97/106 (91.51%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSS-----SFMRSGSTSKSPLLRCSSQKSFPASNSKSPHDLP 60
           MDEKWN  KKEGSGSSYHHSS     SF+RSGSTSKSPLLRCSSQKS P+SNSK+PHDLP
Sbjct: 1   MDEKWNLSKKEGSGSSYHHSSTNAKSSFLRSGSTSKSPLLRCSSQKSIPSSNSKNPHDLP 60

Query: 61  RSYSQKSSS-SIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           RSYSQKSSS SIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  RSYSQKSSSNSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 106

BLAST of CmaCh13G001150 vs. NCBI nr
Match: gi|802563617|ref|XP_012066989.1| (PREDICTED: putative protein TPRXL [Jatropha curcas])

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 79/111 (71.17%), Postives = 82/111 (73.87%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFMRSGST-----SKSPLL------RCSSQKSFPASNSK 60
           MDEKW P KKEGS SS   SSSF+RS ST     SKSPLL      R SS KS   SN+K
Sbjct: 1   MDEKWKPSKKEGSSSS---SSSFVRSFSTKSSSSSKSPLLSSSSLKRSSSLKSSSPSNNK 60

Query: 61  SPHDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
            P  LPRSYSQK+SS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  CP--LPRSYSQKNSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 105

BLAST of CmaCh13G001150 vs. NCBI nr
Match: gi|1000963338|ref|XP_015575499.1| (PREDICTED: bromodomain-containing protein DDB_G0270170 [Ricinus communis])

HSP 1 Score: 116.7 bits (291), Expect = 2.3e-23
Identity = 74/107 (69.16%), Postives = 79/107 (73.83%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSGSSYHHSSSFMRSGSTSKSPLLRCSSQK--SFPASNSKSPHD----- 60
           MDEKW P KKEGS S      SF    S+SKSPLLR SS K  S P+S+S S ++     
Sbjct: 1   MDEKWKPSKKEGSSSFVR---SFSTKSSSSKSPLLRSSSLKISSSPSSSSSSSNNNNKCP 60

Query: 61  LPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           LPRSYSQKSSS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 61  LPRSYSQKSSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 103

BLAST of CmaCh13G001150 vs. NCBI nr
Match: gi|590589141|ref|XP_007016365.1| (ROTUNDIFOLIA like 4, partial [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 1.5e-22
Identity = 76/109 (69.72%), Postives = 80/109 (73.39%), Query Frame = 1

Query: 1   MDEKWNPPKKEGSG----SSYHHSSSFMRSGST----SKSPLLRCSSQKSF-PASNSKSP 60
           MDEKW   KKE SG    SS    SS  RS ST    SKSPLLR SSQKS   +S+S S 
Sbjct: 49  MDEKWKISKKEASGIHCSSSSSKFSSLTRSFSTKSISSKSPLLRSSSQKSSCSSSSSSSK 108

Query: 61  HDLPRSYSQKSSSSIGRKYSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 101
           + LPRS+SQKSSS I RK SSLAKEQKARFYIMRRCVAMLVCWHKHGDS
Sbjct: 109 YPLPRSFSQKSSS-ISRKCSSLAKEQKARFYIMRRCVAMLVCWHKHGDS 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0J4_CUCSA3.8e-4188.68Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524140 PE=4 SV=1[more]
A0A067L1G2_JATCU4.3e-2471.17Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02962 PE=4 SV=1[more]
B9S3H4_RICCO1.6e-2369.16Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0734910 PE=4 SV=1[more]
A0A061H013_THECC1.1e-2269.72ROTUNDIFOLIA like 4 (Fragment) OS=Theobroma cacao GN=TCM_041800 PE=4 SV=1[more]
A0A0D2QCJ8_GOSRA1.2e-2167.89Uncharacterized protein OS=Gossypium raimondii GN=B456_009G097500 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G29125.14.0e-2159.13 ROTUNDIFOLIA like 2[more]
AT1G07490.19.1e-1855.56 ROTUNDIFOLIA like 3[more]
AT5G59510.11.1e-1050.65 ROTUNDIFOLIA like 5[more]
AT3G46613.11.3e-0843.33 ROTUNDIFOLIA like 4[more]
AT2G36985.11.2e-0661.29 DVL family protein[more]
Match NameE-valueIdentityDescription
gi|659115242|ref|XP_008457457.1|2.5e-4188.68PREDICTED: uncharacterized protein LOC103497141 [Cucumis melo][more]
gi|449472053|ref|XP_004153482.1|5.5e-4188.68PREDICTED: uncharacterized protein LOC101207628 [Cucumis sativus][more]
gi|802563617|ref|XP_012066989.1|6.1e-2471.17PREDICTED: putative protein TPRXL [Jatropha curcas][more]
gi|1000963338|ref|XP_015575499.1|2.3e-2369.16PREDICTED: bromodomain-containing protein DDB_G0270170 [Ricinus communis][more]
gi|590589141|ref|XP_007016365.1|1.5e-2269.72ROTUNDIFOLIA like 4, partial [Theobroma cacao][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012552DVL
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G001150.1CmaCh13G001150.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012552DVLPFAMPF08137DVLcoord: 75..93
score: 1.3
NoneNo IPR availablePANTHERPTHR33102FAMILY NOT NAMEDcoord: 30..100
score: 1.1
NoneNo IPR availablePANTHERPTHR33102:SF3DVL13-RELATEDcoord: 30..100
score: 1.1

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G001150CmaCh01G006170Cucurbita maxima (Rimu)cmacmaB220
CmaCh13G001150CmaCh02G007900Cucurbita maxima (Rimu)cmacmaB228
CmaCh13G001150CmaCh04G002060Cucurbita maxima (Rimu)cmacmaB234