CmaCh17G000140 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh17G000140
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRing finger protein, putative
LocationCma_Chr17 : 61687 .. 63288 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAAAACCTTGAGATTCTGTTTAGCCTGCCATCGCACGTTAGCTCTTTGAGAAGAAGAATCTCATCAAAATCGCTATTTCTTTTTCATCGTTTCAGACTTTTTGCCGCCATTTCTGATACTTCTTTCTTCAACCCTTCCATATCAAAATCTCCCACTTCCATTCTCCCTTCATGGACCCACCACCACAACTATTCCAATCAGCAGAACAACCGTCATCTTCTCCTTCCCCTTCCATCCATTTCATATTTCTTCAATATTTTCCCCAGTTCCCTTTGAGTCACCTCCAAGCCATATCACGATTCTTCTTCCCCTTCTCCTTTCTTTTCTTTTCTTTTCCATTCTATTTCCCCAGGATTCCCCTTTCTAACTCTCTAAGTTTCTGCGATTTTCCCAGTTGGGTTTTCAGATTTCGAGACGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTTGTTCCTCTCAATCCAATAGCCTCAATTACGAGATTGAATCCAGGGTGGATTTTGAGCAGCAGGTAAAAAGTAATGCCATCTCTCTTAATCTGGATCTGCACAGTGCGTTTTCTATATGTTTGTAGATCATGAAATCTCATTGGCTAATTATCATATGCTACTCAGTCTACTGGTGTAGCCAAGGATTAGAATGATACCATTGTCTCGCATCTATATGTCAAAATGATGAGCTTCTTGATTCTTTTTTGTTGTTTTGATGCCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAGGCTTTCAATTCTGTAGAATGTGCTCAGTAAGTAAAACTTTTAATTCATTAGCATAAGAATAGATGGTTTGGCTTACAGTTTTGTAGAAGATGTTGAGCACTGATAGATAGATTACCTGACCCACTAAACTATGGCTTATTGTGCTCCACTTTCAGGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAGTCTACATGCCCAATTTGGCTGCCATTGCAAGACTCTTCTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCCGGCCCCATCCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTTCAGTAAACCCCTCAGTTCAAAGAGAGAGAGAAACAATACGATGACCAAATTAGCTTCACTGCTGGGTAGGTAGGAGCATGATTACATCATTGGATATCCCATACTTCTGTACAGAAGTGTTTCCATATTCTTTTGCATTGGGTAGTGTAGATTTAGGCCTTCGCAAACAATGCAATGAATTCTCATCATGTTGTGGATATCTATCTCTATAAGTTTTTACCTCATTCAAACATAACATATCAAATGAAAGTTTGGCAGAAACTTGCAGCAATGAACATTTTTCCTGG

mRNA sequence

ATGGAGAAAAACCTTGAGATTCTGTTTAGCCTGCCATCGCACGTTAGCTCTTTGAGAAGAAGAATCTCATCAAAATCGCTATTTCTTTTTCATCGTTTCAGACTTTTTGCCGCCATTTCTGATACTTCTTTCTTCAACCCTTCCATATCAAAATCTCCCACTTCCATTCTCCCTTCATGGACCCACCACCACAACTATTCCAATCAGCAGAACAACCGTCATCTTCTCCTTCCCCTTCCATCCATTTCATATTTCTTCAATATTTTCCCCATTGGGTTTTCAGATTTCGAGACGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTTGTTCCTCTCAATCCAATAGCCTCAATTACGAGATTGAATCCAGGGTGGATTTTGAGCAGCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAGGCTTTCAATTCTGTAGAATGTGCTCAGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAGTCTACATGCCCAATTTGGCTGCCATTGCAAGACTCTTCTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCCGGCCCCATCCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTTCAGTAAACCCCTCAGTTCAAAGAGAGAGAGAAACAATACGATGACCAAATTAGCTTCACTGCTGGGTAGGTAGGAGCATGATTACATCATTGGATATCCCATACTTCTGTACAGAAGTGTTTCCATATTCTTTTGCATTGGGTAGTGTAGATTTAGGCCTTCGCAAACAATGCAATGAATTCTCATCATGTTGTGGATATCTATCTCTATAAGTTTTTACCTCATTCAAACATAACATATCAAATGAAAGTTTGGCAGAAACTTGCAGCAATGAACATTTTTCCTGG

Coding sequence (CDS)

ATGGAGAAAAACCTTGAGATTCTGTTTAGCCTGCCATCGCACGTTAGCTCTTTGAGAAGAAGAATCTCATCAAAATCGCTATTTCTTTTTCATCGTTTCAGACTTTTTGCCGCCATTTCTGATACTTCTTTCTTCAACCCTTCCATATCAAAATCTCCCACTTCCATTCTCCCTTCATGGACCCACCACCACAACTATTCCAATCAGCAGAACAACCGTCATCTTCTCCTTCCCCTTCCATCCATTTCATATTTCTTCAATATTTTCCCCATTGGGTTTTCAGATTTCGAGACGACGGGTTCTGGTATGAACTTTATTACCACTGTTGTCGGGTTTGGAATGAGTGCCACATTCATAGTGTTCATCTGTACAAGAATCATCTGTGGTCGACTTTGTTCCTCTCAATCCAATAGCCTCAATTACGAGATTGAATCCAGGGTGGATTTTGAGCAGCAGCCAGAGTCTCGGGCAAGTGGTCTCGAACCGGTTCTCATCGCCGCTATTCCAACTATGAAGTTCAATCGAGAGGCTTTCAATTCTGTAGAATGTGCTCAGTGTTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAAGTACTGAGAATGATGCCCAAATGCGGTCACAGATTTCATCGCTCCTGCATTGATGTTTGGCTGAGAAAGCAGTCTACATGCCCAATTTGGCTGCCATTGCAAGACTCTTCTAGAACAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACCGATCATCATTCTCAACACTGGCTTCTACCCGGCCCCATCCGTTCGGAGGGCAACACAAGCAACCAGACACAGCTTGAATCCGTTTCAGTAAACCCCTCAGTTCAAAGAGAGAGAGAAACAATACGATGA

Protein sequence

MEKNLEILFSLPSHVSSLRRRISSKSLFLFHRFRLFAAISDTSFFNPSISKSPTSILPSWTHHHNYSNQQNNRHLLLPLPSISYFFNIFPIGFSDFETTGSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASGLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPIWLPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSNQTQLESVSVNPSVQRERETIR
Homology
[Close]
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.0e-15
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1 

Query: 74  HLLLPLPSISYFFNIFPIGFSDFETTGSGMNF---ITTVVGFGMSATFIVFICTRI--IC 133
           +L+ P P  S+F         D +++ S  +F   +  ++G   SA  +V   T I   C
Sbjct: 31  YLIFPPPPPSFFL--------DDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYC 90

Query: 134 GR---LCSSQSNSLNYEIESRVDFEQQPESRASGLEPVLIAAIPTMKFNREAFNSVECAQ 193
            R     SS++ +LN+  E      Q+  +   GL   +I +I   K+ +     V+ + 
Sbjct: 91  HRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKY-KSGDGFVDGSD 150

Query: 194 CSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPI 227
           CS+CL E+EE E LR++PKC H FH  CID WL+  S CP+
Sbjct: 151 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPL 182

[Close]
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.0e-13
Identity = 50/161 (31.06%), Postives = 73/161 (45.34%), Query Frame = 1 

Query: 78  PLPSISYFFNIFPIGFSDFETTGSGMNF-ITTVVGFGMSATFIVFICTRIICGRLCSSQS 137
           P PS ++   IFP       T+ SG NF I  +   G+ AT  + +   I   + C +  
Sbjct: 20  PPPSTTFTSPIFP------RTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWH 79

Query: 138 NSLNYEIESRVDFEQ-----QPESRASGLEPVLIAAIPTMKFNR------EAFNSVECAQ 197
               +    R   +       P     GL+   I AIP  KF +      E   S    +
Sbjct: 80  QIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQE 139

Query: 198 CSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPI 227
           CS+CL E++E E LR++P C H FH  CID+WL+  + CP+
Sbjct: 140 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPL 174

[Close]
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match: ATL51_ARATH (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 8.5e-13
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 159 GLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWL 218
           GL+  LI +I   K+ R+    VE + CS+CL E++E E LR++PKC H FH  CID WL
Sbjct: 133 GLDESLIKSITVYKY-RKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 192

Query: 219 RKQSTCPI 227
           +  S CP+
Sbjct: 193 KSHSNCPL 199

[Close]
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match: ATL11_ARATH (RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 1.1e-12
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 156 RASGLEPVLIAAIPTMKFNREAFNSV--ECAQCSICLGEYEEKEVLRMMPKCGHRFHRSC 215
           +A GL+  +I   PT +++      +  E  +CS+CL E+E+ E LR++PKC H FH  C
Sbjct: 112 QARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGC 171

Query: 216 IDVWLRKQSTCPI 227
           ID WLR  +TCP+
Sbjct: 172 IDAWLRSHTTCPL 184

[Close]
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 1.5e-12
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1 

Query: 155 SRASGLEPVLIAAIPTMKFNR-EAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSC 214
           S  SGL+  LI  I   K+ R + F  V    CS+CLGE+ + E LR++P+C H FH+ C
Sbjct: 127 SPPSGLDETLINKITVCKYRRGDGF--VHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQC 186

Query: 215 IDVWLRKQSTCPI 227
           ID WL+  S CP+
Sbjct: 187 IDTWLKSHSNCPL 197

[Close]
BLAST of CmaCh17G000140 vs. TrEMBL
Match: A0A0A0K9N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074560 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 2.2e-92
Identity = 170/202 (84.16%), Postives = 186/202 (92.08%), Query Frame = 1 

Query: 99  TGSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRAS 158
           TGSGMN ITTV+GFGMSATFIVF+CTRIICGRL S+QSN+ NYEIESR+D EQQPESRAS
Sbjct: 2   TGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRAS 61

Query: 159 GLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWL 218
           GLEPVLIAAIPTM F+REAF+S+E AQCSICLGEYEEKEVLR+MPKCGH FH +CIDVWL
Sbjct: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121

Query: 219 RKQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 278
           RKQSTCP+  LPLQDS RTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGP RSEGNTS
Sbjct: 122 RKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTS 181

Query: 279 NQTQLESVSVNPSVQRERETIR 300
           NQ+QL+ + VNP+ QRE ETI+
Sbjct: 182 NQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of CmaCh17G000140 vs. TrEMBL
Match: A0A067JXT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14463 PE=4 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 6.1e-66
Identity = 137/201 (68.16%), Postives = 157/201 (78.11%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITTV+GFGMSATFIVF+CTRIICGRL +S+S  + +EIESR+D EQQPE R +G
Sbjct: 3   GSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQQPEHRING 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPVL+AAIPTMKF+REAF+SVE AQCSICLGEY+EKEVLR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 279
           KQSTCP+   P++DS  TK  R  T+SR  +S D  E S + HSQ WLLPGP RS G  S
Sbjct: 123 KQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGTAS 182

Query: 280 NQTQLESVSVNPS-VQRERET 298
           NQ    SV  NP  V  E +T
Sbjct: 183 NQRHAVSVPGNPQLVSAESQT 201

[Close]
BLAST of CmaCh17G000140 vs. TrEMBL
Match: B9RDK3_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 4.3e-64
Identity = 129/191 (67.54%), Postives = 151/191 (79.06%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITTV+GFGMSATFIVF+CTRIICGRL +S+S    +E+ESR+D +Q PE + SG
Sbjct: 3   GSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQ-TFELESRIDLDQ-PEHQISG 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPV++AAIPTMKFNREAF +VE AQCSICLGEY+EKEVLR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVMVAAIPTMKFNREAFTAVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSN 279
           KQSTCP+   P+QD+   K  R  T+S  +S D  E ST+ HS+ WLLPGP RS GN SN
Sbjct: 123 KQSTCPVCRFPIQDTLEAKHMRQATMSMVRSIDSPETSTE-HSRQWLLPGPDRSMGNASN 182

Query: 280 QTQLESVSVNP 290
           Q  L  VS +P
Sbjct: 183 QEHLVPVSGSP 190

[Close]
BLAST of CmaCh17G000140 vs. TrEMBL
Match: A0A061DVK5_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_005426 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 7.4e-64
Identity = 123/193 (63.73%), Postives = 153/193 (79.27%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITT++GFGMSATFIVF+CTRIICGR+  +Q+  + ++ ESR+D EQ PE +  G
Sbjct: 3   GSGMNLITTIIGFGMSATFIVFVCTRIICGRIRGAQARQM-FQTESRIDLEQ-PEQQIGG 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPV++AAIPT++FNREAF+S+E AQCSICLG+Y+EKE+LR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVVVAAIPTLRFNREAFSSIEDAQCSICLGDYQEKEILRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSN 279
           KQSTCP+  LPLQ+SS  K ARP T++  QS +  E ST +HS  WLLPGP RS GN  N
Sbjct: 123 KQSTCPVCRLPLQESSEAKSARPATLTMTQSMESPETST-YHSGQWLLPGPDRSVGNQIN 182

Query: 280 QTQLESVSVNPSV 292
           Q  L+S +  P +
Sbjct: 183 QPHLDSATRTPEM 192

[Close]
BLAST of CmaCh17G000140 vs. TrEMBL
Match: W9RGS6_9ROSA (RING-H2 finger protein ATL54 OS=Morus notabilis GN=L484_002284 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.2e-63
Identity = 127/185 (68.65%), Postives = 154/185 (83.24%), Query Frame = 1 

Query: 101 SGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASGL 160
           +GMN ITT++GFGMSATFIVF+CTRIICGRL  ++S  + +EIESR+D EQ PE +ASGL
Sbjct: 4   TGMNLITTIIGFGMSATFIVFVCTRIICGRLRRNESRPM-FEIESRIDLEQ-PEHQASGL 63

Query: 161 EPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRK 220
           EPVL+AAIPTMKFN+EAF+S+E   CSICLGEY+EKEVLR+MPKCGH FH SCIDVWLRK
Sbjct: 64  EPVLVAAIPTMKFNQEAFSSIEDTLCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLRK 123

Query: 221 QSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSE-GNTSN 280
           QSTCP+  LPLQ+S  TK  RP+  SR QSFD SE+ ++ HSQ WL+PG  RSE  NT+N
Sbjct: 124 QSTCPVCRLPLQESLGTKHGRPVMFSRTQSFDDSEVPSE-HSQQWLMPGHERSEANNTNN 183

Query: 281 QTQLE 284
           Q+++E
Sbjct: 184 QSRVE 185

[Close]
BLAST of CmaCh17G000140 vs. TAIR10
Match: AT5G17600.1 (AT5G17600.1 RING/U-box superfamily protein)

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-16
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 1 

Query: 74  HLLLPLPSISYFFNIFPIGFSDFETTGSGMNF---ITTVVGFGMSATFIVFICTRI--IC 133
           +L+ P P  S+F         D +++ S  +F   +  ++G   SA  +V   T I   C
Sbjct: 31  YLIFPPPPPSFFL--------DDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYC 90

Query: 134 GR---LCSSQSNSLNYEIESRVDFEQQPESRASGLEPVLIAAIPTMKFNREAFNSVECAQ 193
            R     SS++ +LN+  E      Q+  +   GL   +I +I   K+ +     V+ + 
Sbjct: 91  HRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKY-KSGDGFVDGSD 150

Query: 194 CSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPI 227
           CS+CL E+EE E LR++PKC H FH  CID WL+  S CP+
Sbjct: 151 CSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPL 182

[Close]
BLAST of CmaCh17G000140 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 7.4e-15
Identity = 32/71 (45.07%), Postives = 47/71 (66.20%), Query Frame = 1 

Query: 156 RASGLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCID 215
           R  GL P +I++I   +++++    VE   CS+CL E+EE+E LR++PKC H FH  CID
Sbjct: 188 RTIGLNPTVISSIKVCQYSKKD-GVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCID 247

Query: 216 VWLRKQSTCPI 227
            WLR  + CP+
Sbjct: 248 TWLRSHTNCPL 257

[Close]
BLAST of CmaCh17G000140 vs. TAIR10
Match: AT1G04360.1 (AT1G04360.1 RING/U-box superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.8e-14
Identity = 50/161 (31.06%), Postives = 73/161 (45.34%), Query Frame = 1 

Query: 78  PLPSISYFFNIFPIGFSDFETTGSGMNF-ITTVVGFGMSATFIVFICTRIICGRLCSSQS 137
           P PS ++   IFP       T+ SG NF I  +   G+ AT  + +   I   + C +  
Sbjct: 20  PPPSTTFTSPIFP------RTSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWH 79

Query: 138 NSLNYEIESRVDFEQ-----QPESRASGLEPVLIAAIPTMKFNR------EAFNSVECAQ 197
               +    R   +       P     GL+   I AIP  KF +      E   S    +
Sbjct: 80  QIDIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQE 139

Query: 198 CSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLRKQSTCPI 227
           CS+CL E++E E LR++P C H FH  CID+WL+  + CP+
Sbjct: 140 CSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPL 174

[Close]
BLAST of CmaCh17G000140 vs. TAIR10
Match: AT3G03550.1 (AT3G03550.1 RING/U-box superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 4.8e-14
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1 

Query: 159 GLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWL 218
           GL+  LI +I   K+ R+    VE + CS+CL E++E E LR++PKC H FH  CID WL
Sbjct: 133 GLDESLIKSITVYKY-RKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWL 192

Query: 219 RKQSTCPI 227
           +  S CP+
Sbjct: 193 KSHSNCPL 199

[Close]
BLAST of CmaCh17G000140 vs. TAIR10
Match: AT1G72200.1 (AT1G72200.1 RING/U-box superfamily protein)

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-14
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = 1 

Query: 156 RASGLEPVLIAAIPTMKFNREAFNSV--ECAQCSICLGEYEEKEVLRMMPKCGHRFHRSC 215
           +A GL+  +I   PT +++      +  E  +CS+CL E+E+ E LR++PKC H FH  C
Sbjct: 112 QARGLDASIIETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGC 171

Query: 216 IDVWLRKQSTCPI 227
           ID WLR  +TCP+
Sbjct: 172 IDAWLRSHTTCPL 184

[Close]
BLAST of CmaCh17G000140 vs. NCBI nr
Match: gi|449472490|ref|XP_004153610.1| (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus])

HSP 1 Score: 347.1 bits (889), Expect = 3.2e-92
Identity = 170/202 (84.16%), Postives = 186/202 (92.08%), Query Frame = 1 

Query: 99  TGSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRAS 158
           TGSGMN ITTV+GFGMSATFIVF+CTRIICGRL S+QSN+ NYEIESR+D EQQPESRAS
Sbjct: 2   TGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRAS 61

Query: 159 GLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWL 218
           GLEPVLIAAIPTM F+REAF+S+E AQCSICLGEYEEKEVLR+MPKCGH FH +CIDVWL
Sbjct: 62  GLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121

Query: 219 RKQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 278
           RKQSTCP+  LPLQDS RTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGP RSEGNTS
Sbjct: 122 RKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTS 181

Query: 279 NQTQLESVSVNPSVQRERETIR 300
           NQ+QL+ + VNP+ QRE ETI+
Sbjct: 182 NQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of CmaCh17G000140 vs. NCBI nr
Match: gi|659120380|ref|XP_008460164.1| (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 345.9 bits (886), Expect = 7.1e-92
Identity = 171/202 (84.65%), Postives = 185/202 (91.58%), Query Frame = 1 

Query: 99  TGSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRAS 158
           TGSGMN ITTV+GFGMSATFIVF+CTRIICGRL S+QSN+ NYEIESR+D EQQPESRAS
Sbjct: 2   TGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRAS 61

Query: 159 GLEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWL 218
           GLEPVLIAAIPT KF++EAF+S E AQCSICLGEYEEKEVLR+MPKCGH FH +CIDVWL
Sbjct: 62  GLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWL 121

Query: 219 RKQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 278
           RKQSTCPI  LPLQDS RTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGP RSEGNTS
Sbjct: 122 RKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTS 181

Query: 279 NQTQLESVSVNPSVQRERETIR 300
           NQ+QL+ + VNPS QRE ETI+
Sbjct: 182 NQSQLQPIPVNPSAQREMETIQ 203

[Close]
BLAST of CmaCh17G000140 vs. NCBI nr
Match: gi|802697317|ref|XP_012083487.1| (PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas])

HSP 1 Score: 259.2 bits (661), Expect = 8.7e-66
Identity = 137/201 (68.16%), Postives = 157/201 (78.11%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITTV+GFGMSATFIVF+CTRIICGRL +S+S  + +EIESR+D EQQPE R +G
Sbjct: 3   GSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQQPEHRING 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPVL+AAIPTMKF+REAF+SVE AQCSICLGEY+EKEVLR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 279
           KQSTCP+   P++DS  TK  R  T+SR  +S D  E S + HSQ WLLPGP RS G  S
Sbjct: 123 KQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGTAS 182

Query: 280 NQTQLESVSVNPS-VQRERET 298
           NQ    SV  NP  V  E +T
Sbjct: 183 NQRHAVSVPGNPQLVSAESQT 201

[Close]
BLAST of CmaCh17G000140 vs. NCBI nr
Match: gi|255541456|ref|XP_002511792.1| (PREDICTED: RING-H2 finger protein ATL7 [Ricinus communis])

HSP 1 Score: 253.1 bits (645), Expect = 6.2e-64
Identity = 129/191 (67.54%), Postives = 151/191 (79.06%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITTV+GFGMSATFIVF+CTRIICGRL +S+S    +E+ESR+D +Q PE + SG
Sbjct: 3   GSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQ-TFELESRIDLDQ-PEHQISG 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPV++AAIPTMKFNREAF +VE AQCSICLGEY+EKEVLR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVMVAAIPTMKFNREAFTAVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPIRSEGNTSN 279
           KQSTCP+   P+QD+   K  R  T+S  +S D  E ST+ HS+ WLLPGP RS GN SN
Sbjct: 123 KQSTCPVCRFPIQDTLEAKHMRQATMSMVRSIDSPETSTE-HSRQWLLPGPDRSMGNASN 182

Query: 280 QTQLESVSVNP 290
           Q  L  VS +P
Sbjct: 183 QEHLVPVSGSP 190

[Close]
BLAST of CmaCh17G000140 vs. NCBI nr
Match: gi|802697418|ref|XP_012083488.1| (PREDICTED: RING-H2 finger protein ATL5-like isoform X2 [Jatropha curcas])

HSP 1 Score: 252.7 bits (644), Expect = 8.1e-64
Identity = 136/201 (67.66%), Postives = 156/201 (77.61%), Query Frame = 1 

Query: 100 GSGMNFITTVVGFGMSATFIVFICTRIICGRLCSSQSNSLNYEIESRVDFEQQPESRASG 159
           GSGMN ITTV+GFGMSATFIVF+CTRIICGRL +S+S  + +EIESR+D EQ PE R +G
Sbjct: 3   GSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQ-PEHRING 62

Query: 160 LEPVLIAAIPTMKFNREAFNSVECAQCSICLGEYEEKEVLRMMPKCGHRFHRSCIDVWLR 219
           LEPVL+AAIPTMKF+REAF+SVE AQCSICLGEY+EKEVLR+MPKCGH FH SCIDVWLR
Sbjct: 63  LEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVWLR 122

Query: 220 KQSTCPIW-LPLQDSSRTKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPIRSEGNTS 279
           KQSTCP+   P++DS  TK  R  T+SR  +S D  E S + HSQ WLLPGP RS G  S
Sbjct: 123 KQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGTAS 182

Query: 280 NQTQLESVSVNPS-VQRERET 298
           NQ    SV  NP  V  E +T
Sbjct: 183 NQRHAVSVPGNPQLVSAESQT 200

The following BLAST results are available for this feature:
BLAST of CmaCh17G000140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL52_ARATH7.0e-1532.30RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL1_ARATH5.0e-1331.06RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1[more]
ATL51_ARATH8.5e-1347.06RING-H2 finger protein ATL51 OS=Arabidopsis thaliana GN=ATL51 PE=2 SV=2[more]
ATL11_ARATH1.1e-1242.47RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2[more]
ATL41_ORYSJ1.5e-1245.21E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04... [more]
BLAST of CmaCh17G000140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9N8_CUCSA2.2e-9284.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074560 PE=4 SV=1[more]
A0A067JXT5_JATCU6.1e-6668.16Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14463 PE=4 SV=1[more]
B9RDK3_RICCO4.3e-6467.54Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1[more]
A0A061DVK5_THECC7.4e-6463.73RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_005426 PE=4 SV=1[more]
W9RGS6_9ROSA2.2e-6368.65RING-H2 finger protein ATL54 OS=Morus notabilis GN=L484_002284 PE=4 SV=1[more]
BLAST of CmaCh17G000140 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G17600.13.9e-1632.30 RING/U-box superfamily protein[more]
AT4G33565.17.4e-1545.07 RING/U-box superfamily protein[more]
AT1G04360.12.8e-1431.06 RING/U-box superfamily protein[more]
AT3G03550.14.8e-1447.06 RING/U-box superfamily protein[more]
AT1G72200.16.3e-1442.47 RING/U-box superfamily protein[more]
BLAST of CmaCh17G000140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472490|ref|XP_004153610.1|3.2e-9284.16PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus][more]
gi|659120380|ref|XP_008460164.1|7.1e-9284.65PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo][more]
gi|802697317|ref|XP_012083487.1|8.7e-6668.16PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas][more]
gi|255541456|ref|XP_002511792.1|6.2e-6467.54PREDICTED: RING-H2 finger protein ATL7 [Ricinus communis][more]
gi|802697418|ref|XP_012083488.1|8.1e-6467.66PREDICTED: RING-H2 finger protein ATL5-like isoform X2 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh17G000140.1CmaCh17G000140.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 185..226
score: 1.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 186..227
score: 2.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 186..226
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 183..226
score: 5.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 100..252
score: 2.7
NoneNo IPR availablePANTHERPTHR14155:SF160SUBFAMILY NOT NAMEDcoord: 100..252
score: 2.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 185..226
score: 1.41

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh17G000140Cucsa.363140Cucumber (Gy14) v1cgycmaB0997
CmaCh17G000140Cla006928Watermelon (97103) v1cmawmB359
CmaCh17G000140Csa6G074560Cucumber (Chinese Long) v2cmacuB382
CmaCh17G000140MELO3C022529Melon (DHL92) v3.5.1cmameB314
CmaCh17G000140ClCG06G000090Watermelon (Charleston Gray)cmawcgB329
CmaCh17G000140CSPI06G05530Wild cucumber (PI 183967)cmacpiB373
CmaCh17G000140CmoCh08G009010Cucurbita moschata (Rifu)cmacmoB382
CmaCh17G000140CmoCh17G000170Cucurbita moschata (Rifu)cmacmoB353
CmaCh17G000140Lsi09G019330Bottle gourd (USVL1VR-Ls)cmalsiB332
CmaCh17G000140Cp4.1LG12g00150Cucurbita pepo (Zucchini)cmacpeB371
CmaCh17G000140Cp4.1LG17g03460Cucurbita pepo (Zucchini)cmacpeB383
CmaCh17G000140MELO3C022529.2Melon (DHL92) v3.6.1cmamedB366
CmaCh17G000140CsaV3_6G005840Cucumber (Chinese Long) v3cmacucB0454
CmaCh17G000140Cla97C06G109350Watermelon (97103) v2cmawmbB378
CmaCh17G000140BhiUN123G50Wax gourdcmawgoB0498
CmaCh17G000140CsGy6G005470Cucumber (Gy14) v2cgybcmaB753
CmaCh17G000140Carg11109Silver-seed gourdcarcmaB1488
CmaCh17G000140Carg10217Silver-seed gourdcarcmaB0314
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh17G000140Bottle gourd (USVL1VR-Ls)cmalsiB334
CmaCh17G000140Bottle gourd (USVL1VR-Ls)cmalsiB356
CmaCh17G000140Cucumber (Gy14) v2cgybcmaB345
CmaCh17G000140Cucumber (Gy14) v2cgybcmaB766
CmaCh17G000140Melon (DHL92) v3.6.1cmamedB368
CmaCh17G000140Cucumber (Chinese Long) v3cmacucB0425
CmaCh17G000140Cucumber (Chinese Long) v3cmacucB0441
CmaCh17G000140Watermelon (97103) v2cmawmbB370
CmaCh17G000140Watermelon (97103) v2cmawmbB366
CmaCh17G000140Cucurbita maxima (Rimu)cmacmaB390
CmaCh17G000140Cucumber (Gy14) v1cgycmaB0998
CmaCh17G000140Wild cucumber (PI 183967)cmacpiB361
CmaCh17G000140Wild cucumber (PI 183967)cmacpiB386
CmaCh17G000140Cucumber (Chinese Long) v2cmacuB357
CmaCh17G000140Cucumber (Chinese Long) v2cmacuB369
CmaCh17G000140Melon (DHL92) v3.5.1cmameB316
CmaCh17G000140Watermelon (Charleston Gray)cmawcgB323
CmaCh17G000140Watermelon (97103) v1cmawmB344
CmaCh17G000140Watermelon (97103) v1cmawmB353