Cla006928 (gene) Watermelon (97103) v1

Overview
NameCla006928
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRing H2 finger protein (AHRD V1 ***- D9ZHD8_HYPPE); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr6 : 112493 .. 113447 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGGTCCGGGTATGAACTTGATTACCACTATTATCGGGTTTGGAATGAGTGCTACATTCATAGTCTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCAATCCAATAACCTCAATTATGAGATGGAATCCAGGGTTGATCTTGAGCAGCAAGTAAGAAATAATGTCATCTCTCTTAATCTGGATCTGCACAGTTTTTTTTTTTTGTTTTTTTTTTATTTTTTAATTTTACTTCTAGATCACGAATCCCATGGGTTAATCATCACAAAATGGTGATGTAGCCAACGATTGGAATGATACCATTGTCTTGGCATCTATATGTCAAAATGATGACACTCTTGGTTCTTTATGTTGTTTGATGCCAGCCAGAGTCCCGGGTGAGCGGTCTCGAACCAGTTCTCATAGCTGCTATACCAACGATGAAGTTCGATCGCGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGAGTACAACTTTTTCAATTCATTAGCATATTAATTGCAGGAGAATAGATAGTTAGGCTTACAGTTGTGTAGAAGATGTTCAGCGGCTGATAGATCATCTAAACTATGGTTCATTGCACTCCACTTGCAGGTGCTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAGGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACCTGCATCGATGTATGGCTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCATTGCAAGACTCCTTTACGAGAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACATTGGCTTCTACCTGGCCCCAACCGTTCCGAGGGCAACACAAGCAACCAAGCTCAGCTTGAACCCATTCCAGTAAACCCCTCAGTTCAAAGAGAGATGGAAACAATACAATGA

mRNA sequence

ATGACGGGTCCGGGTATGAACTTGATTACCACTATTATCGGGTTTGGAATGAGTGCTACATTCATAGTCTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCAATCCAATAACCTCAATTATGAGATGGAATCCAGGGTTGATCTTGAGCAGCAACCAGAGTCCCGGGTGAGCGGTCTCGAACCAGTTCTCATAGCTGCTATACCAACGATGAAGTTCGATCGCGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGCTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAGGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACCTGCATCGATGTATGGCTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCATTGCAAGACTCCTTTACGAGAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACATTGGCTTCTACCTGGCCCCAACCGTTCCGAGGGCAACACAAGCAACCAAGCTCAGCTTGAACCCATTCCAGTAAACCCCTCAGTTCAAAGAGAGATGGAAACAATACAATGA

Coding sequence (CDS)

ATGACGGGTCCGGGTATGAACTTGATTACCACTATTATCGGGTTTGGAATGAGTGCTACATTCATAGTCTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCAATCCAATAACCTCAATTATGAGATGGAATCCAGGGTTGATCTTGAGCAGCAACCAGAGTCCCGGGTGAGCGGTCTCGAACCAGTTCTCATAGCTGCTATACCAACGATGAAGTTCGATCGCGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGCTCAATCTGTTTGGGTGAGTATGAAGAGAAGGAGGTACTGAGAATAATGCCCAAATGTGGTCACAGTTTTCATCTCACCTGCATCGATGTATGGCTGAGAAAGCAATCTACATGCCCAGTCTGCAGGCTGCCATTGCAAGACTCCTTTACGAGAAAACCTGCAAGACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACTGATCATCATTCTCAACATTGGCTTCTACCTGGCCCCAACCGTTCCGAGGGCAACACAAGCAACCAAGCTCAGCTTGAACCCATTCCAGTAAACCCCTCAGTTCAAAGAGAGATGGAAACAATACAATGA

Protein sequence

MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRVSGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSNQAQLEPIPVNPSVQREMETIQ
Homology
[Close]
BLAST of Cla006928 vs. Swiss-Prot
Match: ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 50/129 (38.76%), Postives = 69/129 (53.49%), Query Frame = 1 

Query: 8   LITTIIGFGMSATFIVFVCTRI--ICGR---LRSSQSNNLNYEMESRVDLEQQPESRVSG 67
           L+  +IG   SA  +V   T I   C R     SS++ NLN+  E      Q+  +   G
Sbjct: 57  LLIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDG 116

Query: 68  LEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLR 127
           L   +I +I   K+ +     V+ + CS+CL E+EE E LR++PKC H+FHL CID WL+
Sbjct: 117 LNESMIKSITVYKY-KSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 176

Query: 128 KQSTCPVCR 132
             S CP+CR
Sbjct: 177 SHSNCPLCR 184

[Close]
BLAST of Cla006928 vs. Swiss-Prot
Match: ATL42_ARATH (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 41/132 (31.06%), Postives = 68/132 (51.52%), Query Frame = 1 

Query: 4   PGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDL----EQQPESR 63
           P + ++T ++    + TF++ V  +     LRS   +   ++   R  +          R
Sbjct: 35  PSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDR 94

Query: 64  VSGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDV 123
            SGL+   I ++P  +F      S +   CS+CL ++E  E+LR++PKC H+FH+ CID 
Sbjct: 95  FSGLDKTAIESLPLFRFSALK-GSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQ 154

Query: 124 WLRKQSTCPVCR 132
           WL + +TCP+CR
Sbjct: 155 WLEQHATCPLCR 165

[Close]
BLAST of Cla006928 vs. Swiss-Prot
Match: ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-16
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1 

Query: 55  QPESRVSGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHL 114
           Q  S +S L+P ++  IP   +  +   S  + +CS+CL E+EE +  R++PKCGH FH+
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 TCIDVWLRKQSTCPVCRLPLQDSFTRKPARPMT 148
            CID W R +S+CP+CR P+Q      PA+P+T
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ------PAQPVT 165

[Close]
BLAST of Cla006928 vs. Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.6e-16
Identity = 53/152 (34.87%), Postives = 80/152 (52.63%), Query Frame = 1 

Query: 20  TFIVFVCTRIICGRLRSSQS---NNLNYEMESRVDLEQQPESRVSGLEPVLIAAIPTMKF 79
           TFIV     +I  R  S+ +   ++L     + V       +   GL   +   +P + +
Sbjct: 41  TFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPTNNNLSTAELGLSKDIREMLPVVIY 100

Query: 80  DREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLRKQSTCPVCRLPL-- 139
            +E+F  V+D+QCS+CLG+Y+ +E L+ MP CGH+FH+ CID+WL   +TCP+CRL L  
Sbjct: 101 -KESFI-VKDSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIP 160

Query: 140 QDSFTRKPARPMTVSRDQSFDGSEISTDHHSQ 167
           + S          VS  ++ +G E ST   SQ
Sbjct: 161 KPSLDLSHQSTEIVSSIENSNGGEASTQPDSQ 190

[Close]
BLAST of Cla006928 vs. Swiss-Prot
Match: ATL38_ARATH (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1 

Query: 8   LITTIIGFGMSATFIVFVCTRIICGRLRSSQSNN--LNYEMESRVDLEQQPESRVSGLEP 67
           L+ TII F +    +  VC R    +  S +S N   + ++ESR  +     + V GL+ 
Sbjct: 16  LVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSI-----TAVRGLDE 75

Query: 68  VLIAAIPTMKFD--REAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLRK 127
            +I + PT  +   +E    +   +C++C+ E+E+ E LR+MP+C H FH  C+ VWL  
Sbjct: 76  AIINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSD 135

Query: 128 QSTCPVCRLPL 135
            STCP+CR+ L
Sbjct: 136 HSTCPLCRVDL 141

[Close]
BLAST of Cla006928 vs. TrEMBL
Match: A0A0A0K9N8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074560 PE=4 SV=1)

HSP 1 Score: 391.3 bits (1004), Expect = 6.9e-106
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           MTG GMNLITT+IGFGMSATFIVFVCTRIICGRLRS+QSN  NYE+ESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTM FDREAFSS+EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCRLPLQDSF  KPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQAQLEPIPVNPSVQREMETIQ 204
           SNQ+QL+PIPVNP+ QREMETIQ
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of Cla006928 vs. TrEMBL
Match: A0A067JXT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14463 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-74
Identity = 144/203 (70.94%), Postives = 164/203 (80.79%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M G GMNLITT+IGFGMSATFIVFVCTRIICGRLR+S+S  + +E+ESR+DLEQQPE R+
Sbjct: 1   MFGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQQPEHRI 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           +GLEPVL+AAIPTMKF REAFSSVEDAQCSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  NGLEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPNRSEGN 180
           LRKQSTCPVCR P++DS   K  R  T+SR  +S D  E S + HSQ WLLPGP RS G 
Sbjct: 121 LRKQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGT 180

Query: 181 TSNQAQLEPIPVNPS-VQREMET 202
            SNQ     +P NP  V  E +T
Sbjct: 181 ASNQRHAVSVPGNPQLVSAESQT 201

[Close]
BLAST of Cla006928 vs. TrEMBL
Match: B9RDK3_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.0e-72
Identity = 136/193 (70.47%), Postives = 162/193 (83.94%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M G GMNLITT+IGFGMSATFIVFVCTRIICGRLR+S+S    +E+ESR+DL+Q PE ++
Sbjct: 1   MLGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQ-TFELESRIDLDQ-PEHQI 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPV++AAIPTMKF+REAF++VEDAQCSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  SGLEPVMVAAIPTMKFNREAFTAVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCR P+QD+   K  R  T+S  +S D  E ST+ HS+ WLLPGP+RS GN 
Sbjct: 121 LRKQSTCPVCRFPIQDTLEAKHMRQATMSMVRSIDSPETSTE-HSRQWLLPGPDRSMGNA 180

Query: 181 SNQAQLEPIPVNP 194
           SNQ  L P+  +P
Sbjct: 181 SNQEHLVPVSGSP 190

[Close]
BLAST of Cla006928 vs. TrEMBL
Match: W9RGS6_9ROSA (RING-H2 finger protein ATL54 OS=Morus notabilis GN=L484_002284 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 143/208 (68.75%), Postives = 169/208 (81.25%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M   GMNLITTIIGFGMSATFIVFVCTRIICGRLR ++S  + +E+ESR+DLEQ PE + 
Sbjct: 1   MVDTGMNLITTIIGFGMSATFIVFVCTRIICGRLRRNESRPM-FEIESRIDLEQ-PEHQA 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVL+AAIPTMKF++EAFSS+ED  CSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  SGLEPVLVAAIPTMKFNQEAFSSIEDTLCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSE-GN 180
           LRKQSTCPVCRLPLQ+S   K  RP+  SR QSFD SE+ ++ HSQ WL+PG  RSE  N
Sbjct: 121 LRKQSTCPVCRLPLQESLGTKHGRPVMFSRTQSFDDSEVPSE-HSQQWLMPGHERSEANN 180

Query: 181 TSNQAQLEPI-PVN---PSVQREMETIQ 204
           T+NQ+++E   PV+   P+   E ET Q
Sbjct: 181 TNNQSRVEESHPVDHSQPTTSGESETTQ 205

[Close]
BLAST of Cla006928 vs. TrEMBL
Match: M5X0M1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011624mg PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.3e-71
Identity = 140/202 (69.31%), Postives = 161/202 (79.70%), Query Frame = 1 

Query: 3   GPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRVSG 62
           G GMNL+TT+IGFGMSATFIVFVCTRIICGRLR  +S  + +E+ESR+D+EQ PE + SG
Sbjct: 2   GSGMNLVTTVIGFGMSATFIVFVCTRIICGRLRGGESRPM-FEIESRIDVEQ-PEHQASG 61

Query: 63  LEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVWLR 122
           LE V+++AIPTMKFD +AFSS+EDAQCSICLGEY+EKEVLRIMPKCGHSFHL+CID WLR
Sbjct: 62  LEQVVVSAIPTMKFDHKAFSSLEDAQCSICLGEYQEKEVLRIMPKCGHSFHLSCIDTWLR 121

Query: 123 KQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNTSN 182
           KQSTCPVCRLPL++S   K  R  T S  +SFD SE+ST+ HSQ WLLPG  RS GN SN
Sbjct: 122 KQSTCPVCRLPLKESLGIKHVRSATFSMPRSFDDSEVSTE-HSQLWLLPGSERSAGNVSN 181

Query: 183 QAQLEPIPVNPS---VQREMET 202
           Q   E  P NPS     RE ET
Sbjct: 182 QGHSESAPGNPSEPTPSREPET 200

[Close]
BLAST of Cla006928 vs. NCBI nr
Match: gi|449472490|ref|XP_004153610.1| (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus])

HSP 1 Score: 391.3 bits (1004), Expect = 1.0e-105
Identity = 187/203 (92.12%), Postives = 195/203 (96.06%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           MTG GMNLITT+IGFGMSATFIVFVCTRIICGRLRS+QSN  NYE+ESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPTM FDREAFSS+EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCRLPLQDSF  KPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQAQLEPIPVNPSVQREMETIQ 204
           SNQ+QL+PIPVNP+ QREMETIQ
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of Cla006928 vs. NCBI nr
Match: gi|659120380|ref|XP_008460164.1| (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 389.4 bits (999), Expect = 3.8e-105
Identity = 186/203 (91.63%), Postives = 194/203 (95.57%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           MTG GMNLITT+IGFGMSATFIVFVCTRIICGRLRS+QSN  NYE+ESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPVLIAAIPT KFD+EAFSS EDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCP+CRLPLQDSF  KPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SNQAQLEPIPVNPSVQREMETIQ 204
           SNQ+QL+PIPVNPS QREMETIQ
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]
BLAST of Cla006928 vs. NCBI nr
Match: gi|802697317|ref|XP_012083487.1| (PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas])

HSP 1 Score: 287.0 bits (733), Expect = 2.6e-74
Identity = 144/203 (70.94%), Postives = 164/203 (80.79%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M G GMNLITT+IGFGMSATFIVFVCTRIICGRLR+S+S  + +E+ESR+DLEQQPE R+
Sbjct: 1   MFGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQQPEHRI 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           +GLEPVL+AAIPTMKF REAFSSVEDAQCSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  NGLEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPNRSEGN 180
           LRKQSTCPVCR P++DS   K  R  T+SR  +S D  E S + HSQ WLLPGP RS G 
Sbjct: 121 LRKQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGT 180

Query: 181 TSNQAQLEPIPVNPS-VQREMET 202
            SNQ     +P NP  V  E +T
Sbjct: 181 ASNQRHAVSVPGNPQLVSAESQT 201

[Close]
BLAST of Cla006928 vs. NCBI nr
Match: gi|255541456|ref|XP_002511792.1| (PREDICTED: RING-H2 finger protein ATL7 [Ricinus communis])

HSP 1 Score: 281.2 bits (718), Expect = 1.5e-72
Identity = 136/193 (70.47%), Postives = 162/193 (83.94%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M G GMNLITT+IGFGMSATFIVFVCTRIICGRLR+S+S    +E+ESR+DL+Q PE ++
Sbjct: 1   MLGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQ-TFELESRIDLDQ-PEHQI 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           SGLEPV++AAIPTMKF+REAF++VEDAQCSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  SGLEPVMVAAIPTMKFNREAFTAVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180
           LRKQSTCPVCR P+QD+   K  R  T+S  +S D  E ST+ HS+ WLLPGP+RS GN 
Sbjct: 121 LRKQSTCPVCRFPIQDTLEAKHMRQATMSMVRSIDSPETSTE-HSRQWLLPGPDRSMGNA 180

Query: 181 SNQAQLEPIPVNP 194
           SNQ  L P+  +P
Sbjct: 181 SNQEHLVPVSGSP 190

[Close]
BLAST of Cla006928 vs. NCBI nr
Match: gi|802697418|ref|XP_012083488.1| (PREDICTED: RING-H2 finger protein ATL5-like isoform X2 [Jatropha curcas])

HSP 1 Score: 280.4 bits (716), Expect = 2.5e-72
Identity = 143/203 (70.44%), Postives = 163/203 (80.30%), Query Frame = 1 

Query: 1   MTGPGMNLITTIIGFGMSATFIVFVCTRIICGRLRSSQSNNLNYEMESRVDLEQQPESRV 60
           M G GMNLITT+IGFGMSATFIVFVCTRIICGRLR+S+S  + +E+ESR+DLEQ PE R+
Sbjct: 1   MFGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQM-FEIESRIDLEQ-PEHRI 60

Query: 61  SGLEPVLIAAIPTMKFDREAFSSVEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120
           +GLEPVL+AAIPTMKF REAFSSVEDAQCSICLGEY+EKEVLRIMPKCGH+FHL+CIDVW
Sbjct: 61  NGLEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDSFTRKPARPMTVSR-DQSFDGSEISTDHHSQHWLLPGPNRSEGN 180
           LRKQSTCPVCR P++DS   K  R  T+SR  +S D  E S + HSQ WLLPGP RS G 
Sbjct: 121 LRKQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGT 180

Query: 181 TSNQAQLEPIPVNPS-VQREMET 202
            SNQ     +P NP  V  E +T
Sbjct: 181 ASNQRHAVSVPGNPQLVSAESQT 200

The following BLAST results are available for this feature:
BLAST of Cla006928 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL52_ARATH1.0e-1738.76RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1[more]
ATL42_ARATH1.9e-1631.06E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2[more]
ATL5_ARATH2.5e-1641.94RING-H2 finger protein ATL5 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=1[more]
ATL7_ARATH5.6e-1634.87RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1[more]
ATL38_ARATH1.2e-1534.35RING-H2 finger protein ATL38 OS=Arabidopsis thaliana GN=ATL38 PE=2 SV=1[more]
BLAST of Cla006928 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9N8_CUCSA6.9e-10692.12Uncharacterized protein OS=Cucumis sativus GN=Csa_6G074560 PE=4 SV=1[more]
A0A067JXT5_JATCU1.8e-7470.94Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14463 PE=4 SV=1[more]
B9RDK3_RICCO1.0e-7270.47Ring finger protein, putative OS=Ricinus communis GN=RCOM_1613740 PE=4 SV=1[more]
W9RGS6_9ROSA2.5e-7168.75RING-H2 finger protein ATL54 OS=Morus notabilis GN=L484_002284 PE=4 SV=1[more]
M5X0M1_PRUPE3.3e-7169.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011624mg PE=4 SV=1[more]
BLAST of Cla006928 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449472490|ref|XP_004153610.1|1.0e-10592.12PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus][more]
gi|659120380|ref|XP_008460164.1|3.8e-10591.63PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo][more]
gi|802697317|ref|XP_012083487.1|2.6e-7470.94PREDICTED: RING-H2 finger protein ATL7-like isoform X1 [Jatropha curcas][more]
gi|255541456|ref|XP_002511792.1|1.5e-7270.47PREDICTED: RING-H2 finger protein ATL7 [Ricinus communis][more]
gi|802697418|ref|XP_012083488.1|2.5e-7270.44PREDICTED: RING-H2 finger protein ATL5-like isoform X2 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0044267 cellular protein metabolic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006928Cla006928.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 88..131
score: 3.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 89..130
score: 8.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 89..131
score: 13
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 85..134
score: 2.1
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 1..156
score: 6.6
NoneNo IPR availablePANTHERPTHR14155:SF160SUBFAMILY NOT NAMEDcoord: 1..156
score: 6.6
NoneNo IPR availableSMARTSM01197FANCL_C_2coord: 85..139
score: 0
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 80..141
score: 2.12

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006928Cla97C06G109350Watermelon (97103) v2wmwmbB407
Cla006928Csa6G074560Cucumber (Chinese Long) v2cuwmB537
Cla006928MELO3C022529Melon (DHL92) v3.5.1mewmB140
Cla006928ClCG06G000090Watermelon (Charleston Gray)wcgwmB345
Cla006928CSPI06G05530Wild cucumber (PI 183967)cpiwmB556
Cla006928Cucsa.363140Cucumber (Gy14) v1cgywmB666
Cla006928CmaCh17G000140Cucurbita maxima (Rimu)cmawmB359
Cla006928CmoCh17G000170Cucurbita moschata (Rifu)cmowmB354
Cla006928CmoCh08G009010Cucurbita moschata (Rifu)cmowmB862
Cla006928Lsi09G019330Bottle gourd (USVL1VR-Ls)lsiwmB041
Cla006928Cp4.1LG12g00150Cucurbita pepo (Zucchini)cpewmB162
Cla006928Cp4.1LG17g03460Cucurbita pepo (Zucchini)cpewmB342
Cla006928CsGy6G005470Cucumber (Gy14) v2cgybwmB501
Cla006928MELO3C022529.2Melon (DHL92) v3.6.1medwmB138
Cla006928Carg10217Silver-seed gourdcarwmB0220
Cla006928Carg11109Silver-seed gourdcarwmB1079
Cla006928CsaV3_6G005840Cucumber (Chinese Long) v3cucwmB562
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006928Cucumber (Gy14) v1cgywmB484
Cla006928Cucurbita maxima (Rimu)cmawmB251
Cla006928Cucurbita maxima (Rimu)cmawmB326
Cla006928Cucurbita maxima (Rimu)cmawmB810
Cla006928Cucurbita maxima (Rimu)cmawmB874
Cla006928Cucurbita moschata (Rifu)cmowmB241
Cla006928Cucurbita moschata (Rifu)cmowmB320
Cla006928Cucurbita moschata (Rifu)cmowmB801
Cla006928Melon (DHL92) v3.5.1mewmB484
Cla006928Watermelon (Charleston Gray)wcgwmB309
Cla006928Watermelon (Charleston Gray)wcgwmB314
Cla006928Cucumber (Chinese Long) v2cuwmB276
Cla006928Cucurbita pepo (Zucchini)cpewmB625
Cla006928Cucurbita pepo (Zucchini)cpewmB854
Cla006928Bottle gourd (USVL1VR-Ls)lsiwmB385
Cla006928Cucumber (Gy14) v2cgybwmB259
Cla006928Melon (DHL92) v3.6.1medwmB473
Cla006928Silver-seed gourdcarwmB0619
Cla006928Cucumber (Chinese Long) v3cucwmB285
Cla006928Cucumber (Chinese Long) v3cucwmB291
Cla006928Watermelon (97103) v2wmwmbB398
Cla006928Wax gourdwgowmB650
Cla006928Watermelon (97103) v1wmwmB137
Cla006928Watermelon (97103) v1wmwmB140