Carg11109 (gene) Silver-seed gourd

Overview
NameCarg11109
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein
LocationCucurbita_argyrosperma_scaffold_027 : 1049527 .. 1051257 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCAAAGGAAAAACCCACAGAGAAACAGAGCATAATAGAAAGAGAAAGATCAAACCTTGAGATTCTGTTTAGCCTGCCATCGCTCGTTAGCCCTTTGAGAAGAACAAGAACAACAAGAAGAAGAATCTCTTCAACATCGGTCTTCTTTTTCCACCGTTTCTGACTTTTTGCCGTCATTTCTGACACCATCTTTCTTCAATCCTTCGATAAGAAGCAGCCTTCTAAAGCTAAATGGACCCGCCACGACAACGATCCCAATGAGCAGAACAGCCGTCTTCTTTCCCTTCCATCCATTTCATCTTTCTTCACTGCTTTCCCCAATCCCCTTTCTTTCCCTCATCTAATTCTGCAGTTTCTGAGGTTTTTCCAGCTGGGGTTTTGAAATTTGAGGGATTTGAATATGCCGAGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCAACATTCATAGTGTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCACTCCAATTCCCCCAATTACGAGATTGAATCCAGGGTTGATCTTGAGCAGCAGGTAAGAAATAACGGCTGCTTCTCTCTTAATCCGGATCTGCAGTGTGTTATTTGTATTTCTGTAGATCATAAATCTCATTGGTTAATCATCATATGGTATTCAGTAAAGTAGCCAAAGATTAGAATTGTACCATACTTCCATTGCCTTACATCTGTGTATGACAAAATGACAAGTCTCTTGATTCTTTGTTGTTTGATGCCAGCCAGAGTCTCGGGTGAGTGGTCTCGAACCGGTTCTCATAGCTGCTATACCAACGATGAAGTTCGACCTGGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGAGTACAACTTTCACTTCATTACCAAATTTCCTGCAGAAGAATTCATAGTTATACTTTCTAGAACATGCCAACTTCTTATAAGGGTGTGGAAACGTCTCCCAGAGAACGAAACATTCTTTATAAGGGTGTGAAAACCTCTCTCTAACATACGCGTTTTAAAAACCTTGAGGAGAATGGAACATTCTTTATAAGGGTGTGGAAAGTTCTCACAGAGAACGAAACATTGTTTATAAGAGTGTGAAAACTTCTCCCTAACATATGCGTTTTAAAAACTTTGAGGGGAAGCCCGAAAGGGAAAGCCCAAAGAGTGACAATATCTGCTAGCGGTGGCTTGGGCCGTTACATAACCTGACGTAATAAACTATGGTTCATTTTGCTTCATTTTTCAGGTGCTCAATCTGTTTGAGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATACCCAAATGTGGTCACAGTTTTCATCTCGCCTGCATTGATGTATGGCTGAGAAAGCAATCTACCTGTCCAGTTTGCAGGCTGCCATTGCAAGACACTTTTAGAACAAAACCTGTAATACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACAGATCATCATTCTCAACACTGGCTTCAACTTGGCAACACAAGCAGTCAAGAACAGCTTGAATCCGTTCCTGTAAACCCCATAGTTGGAGGAGAGATGACAACAAGACAATGAGTACATAATATTTTCTTGGGTTCACTGCTGAGTAGGTAGGAGCATGATTATATACAATTGGATATCACATACTTTGCACAAATCATTGTTTCCATATTTTTTTGCATTGCGTAGTGTAGATTCAGGCTTTCTAAAACTATGC

mRNA sequence

AATCAAAGGAAAAACCCACAGAGAAACAGAGCATAATAGAAAGAGAAAGATCAAACCTTGAGATTCTGTTTAGCCTGCCATCGCTCGTTAGCCCTTTGAGAAGAACAAGAACAACAAGAAGAAGAATCTCTTCAACATCGGTCTTCTTTTTCCACCGTTTCTGACTTTTTGCCGTCATTTCTGACACCATCTTTCTTCAATCCTTCGATAAGAAGCAGCCTTCTAAAGCTAAATGGACCCGCCACGACAACGATCCCAATGAGCAGAACAGCCGTCTTCTTTCCCTTCCATCCATTTCATCTTTCTTCACTGCTTTCCCCAATCCCCTTTCTTTCCCTCATCTAATTCTGCAGTTTCTGAGGTTTTTCCAGCTGGGGTTTTGAAATTTGAGGGATTTGAATATGCCGAGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCAACATTCATAGTGTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCACTCCAATTCCCCCAATTACGAGATTGAATCCAGGGTTGATCTTGAGCAGCAGCCAGAGTCTCGGGTGAGTGGTCTCGAACCGGTTCTCATAGCTGCTATACCAACGATGAAGTTCGACCTGGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGCTCAATCTGTTTGAGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATACCCAAATGTGGTCACAGTTTTCATCTCGCCTGCATTGATGTATGGCTGAGAAAGCAATCTACCTGTCCAGTTTGCAGGCTGCCATTGCAAGACACTTTTAGAACAAAACCTGTAATACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACAGATCATCATTCTCAACACTGGCTTCAACTTGGCAACACAAGCAGTCAAGAACAGCTTGAATCCGTTCCTGTAAACCCCATAGTTGGAGGAGAGATGACAACAAGACAATGAGTACATAATATTTTCTTGGGTTCACTGCTGAGTAGGTAGGAGCATGATTATATACAATTGGATATCACATACTTTGCACAAATCATTGTTTCCATATTTTTTTGCATTGCGTAGTGTAGATTCAGGCTTTCTAAAACTATGC

Coding sequence (CDS)

ATGCCGAGTTCTGGTATGAACTTGATTACCACTGTTATTGGGTTTGGAATGAGTGCAACATTCATAGTGTTCGTCTGTACAAGAATCATCTGTGGTCGACTTCGTTCATCTCACTCCAATTCCCCCAATTACGAGATTGAATCCAGGGTTGATCTTGAGCAGCAGCCAGAGTCTCGGGTGAGTGGTCTCGAACCGGTTCTCATAGCTGCTATACCAACGATGAAGTTCGACCTGGAGGCTTTCAGTTCTGTAGAAGATGCTCAGTGCTCAATCTGTTTGAGTGAGTATGAAGAGAAGGAAGTACTGAGAATAATACCCAAATGTGGTCACAGTTTTCATCTCGCCTGCATTGATGTATGGCTGAGAAAGCAATCTACCTGTCCAGTTTGCAGGCTGCCATTGCAAGACACTTTTAGAACAAAACCTGTAATACCAATGACAGTGAGCAGAGATCAGTCTTTTGATGGTTCTGAGATTTCAACAGATCATCATTCTCAACACTGGCTTCAACTTGGCAACACAAGCAGTCAAGAACAGCTTGAATCCGTTCCTGTAAACCCCATAGTTGGAGGAGAGATGACAACAAGACAATGA

Protein sequence

MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQLESVPVNPIVGGEMTTRQ
Homology
[Close]
BLAST of Carg11109 vs. NCBI nr
Match: XP_022964478.1 (RING-H2 finger protein ATL5-like [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 4.9e-106
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESR+
Sbjct: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRL 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL 180
           LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL
Sbjct: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL 180

Query: 181 ESVPVNPIVGGEMTTRQ 198
           ESVPVNP VG EMTTRQ
Sbjct: 181 ESVPVNPTVGREMTTRQ 197

[Close]
BLAST of Carg11109 vs. NCBI nr
Match: XP_023513497.1 (RING-H2 finger protein ATL5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 4.9e-106
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV
Sbjct: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHL+CIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL 180
           LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL
Sbjct: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL 180

Query: 181 ESVPVNPIVGGEMTTRQ 198
           ESVPVNP VG EMTTRQ
Sbjct: 181 ESVPVNPTVGREMTTRQ 197

[Close]
BLAST of Carg11109 vs. NCBI nr
Match: XP_022999844.1 (RING-H2 finger protein ATL5-like [Cucurbita maxima])

HSP 1 Score: 390.2 bits (1001), Expect = 4.2e-105
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV
Sbjct: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPTMKFDLEAFSS+EDAQCSICLSEYEEKEVLRIIPKCGHSFHL+CIDVW
Sbjct: 61  SGLEPVLIAAIPTMKFDLEAFSSIEDAQCSICLSEYEEKEVLRIIPKCGHSFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWLQLGNTSSQEQL 180
           LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQ+WLQLGNTSSQEQL
Sbjct: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQNWLQLGNTSSQEQL 180

Query: 181 ESVPVNPIVGGEMTTRQ 198
           ESVPVNP VG EMTTRQ
Sbjct: 181 ESVPVNPTVGREMTTRQ 197

[Close]
BLAST of Carg11109 vs. NCBI nr
Match: XP_004153610.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus] >KGN46203.1 hypothetical protein Csa_6G074560 [Cucumis sativus])

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 168/203 (82.76%), Postives = 177/203 (87.19%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITTVIGFGMSATFIVFVCTRIICGRLRS+ SN+PNYEIESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPTM FD EAFSS+EDAQCSICL EYEEKEVLRI+PKCGHSFHL CIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQSTCPVCRLPLQD+FRTKP  PMTVSRDQSFDGSEISTDHHSQHWL        GNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SSQEQLESVPVNPIVGGEMTTRQ 198
           S+Q QL+ +PVNP    EM T Q
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of Carg11109 vs. NCBI nr
Match: XP_008460164.1 (PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 4.2e-89
Identity = 167/203 (82.27%), Postives = 176/203 (86.70%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITTVIGFGMSATFIVFVCTRIICGRLRS+ SN+PNYEIESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPT KFD EAFSS EDAQCSICL EYEEKEVLRI+PKCGHSFHL CIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQSTCP+CRLPLQD+FRTKP  PMTVSRDQSFDGSEISTDHHSQHWL        GNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SSQEQLESVPVNPIVGGEMTTRQ 198
           S+Q QL+ +PVNP    EM T Q
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]
BLAST of Carg11109 vs. TAIR10
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.6e-18
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 0 

Query: 59  RVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACID 118
           R  GL P +I++I   ++  +    VE   CS+CLSE+EE+E LR++PKC H+FHL CID
Sbjct: 188 RTIGLNPTVISSIKVCQYS-KKDGVVEGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCID 247

Query: 119 VWLRKQSTCPVCRLPL 135
            WLR  + CP+CR P+
Sbjct: 248 TWLRSHTNCPLCRAPI 262

[Close]
BLAST of Carg11109 vs. TAIR10
Match: AT3G62690.1 (AtL5)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-17
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 55  QPESRVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHL 114
           Q  S +S L+P ++  IP   + ++   S  + +CS+CLSE+EE +  R++PKCGH FH+
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 ACIDVWLRKQSTCPVCRLPLQ 136
            CID W R +S+CP+CR P+Q
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ 159

[Close]
BLAST of Carg11109 vs. TAIR10
Match: AT4G28890.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.7 bits (208), Expect = 6.8e-17
Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 0 

Query: 8   LITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDL----EQQPESRVSGL 67
           ++T V+    + TF++ V  +     LRS   +   ++   R  +          R SGL
Sbjct: 39  VVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGL 98

Query: 68  EPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRK 127
           +   I ++P  +F      S +   CS+CLS++E  E+LR++PKC H+FH+ CID WL +
Sbjct: 99  DKTAIESLPLFRFS-ALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQ 158

Query: 128 QSTCPVCR 132
            +TCP+CR
Sbjct: 159 HATCPLCR 165

[Close]
BLAST of Carg11109 vs. TAIR10
Match: AT5G17600.1 (RING/U-box superfamily protein)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-16
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 36  SSHSNSPNYEIESRVDLEQQPESRVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSE 95
           SS + + N+  E      Q+  +   GL   +I +I   K+       V+ + CS+CLSE
Sbjct: 90  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYK-SGDGFVDGSDCSVCLSE 149

Query: 96  YEEKEVLRIIPKCGHSFHLACIDVWLRKQSTCPVCR 132
           +EE E LR++PKC H+FHL CID WL+  S CP+CR
Sbjct: 150 FEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184

[Close]
BLAST of Carg11109 vs. TAIR10
Match: AT2G20030.1 (RING/U-box superfamily protein)

HSP 1 Score: 83.2 bits (204), Expect = 2.0e-16
Identity = 44/126 (34.92%), Postives = 71/126 (56.35%), Query Frame = 0 

Query: 8   LITTVIGFGMSATFIVFVCTRIICGRLRS-SHSNSPNYEIESRVDLEQQPESRVSGLEPV 67
           +IT V     + TF++ V  +     LRS + S+      +          SR SGL+  
Sbjct: 43  IITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKK 102

Query: 68  LIAAIPTMKFDLEAFSSVEDA-QCSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRKQS 127
            I ++P  +F   A   ++   +CS+CLS++E+ E+LR++PKC H+FH+ CID WL + +
Sbjct: 103 AIESLPFFRF--SALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHA 162

Query: 128 TCPVCR 132
           TCP+CR
Sbjct: 163 TCPLCR 166

[Close]
BLAST of Carg11109 vs. Swiss-Prot
Match: sp|Q9LZJ6|ATL5_ARATH (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-16
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 55  QPESRVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHL 114
           Q  S +S L+P ++  IP   + ++   S  + +CS+CLSE+EE +  R++PKCGH FH+
Sbjct: 80  QSSSSLSPLDPTVLEKIPIFVYSVKTHESPLE-ECSVCLSEFEEDDEGRVLPKCGHVFHV 139

Query: 115 ACIDVWLRKQSTCPVCRLPLQ 136
            CID W R +S+CP+CR P+Q
Sbjct: 140 DCIDTWFRSRSSCPLCRAPVQ 159

[Close]
BLAST of Carg11109 vs. Swiss-Prot
Match: sp|Q5XF85|ATL42_ARATH (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-15
Identity = 42/128 (32.81%), Postives = 69/128 (53.91%), Query Frame = 0 

Query: 8   LITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDL----EQQPESRVSGL 67
           ++T V+    + TF++ V  +     LRS   +   ++   R  +          R SGL
Sbjct: 39  VVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFSGL 98

Query: 68  EPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRK 127
           +   I ++P  +F      S +   CS+CLS++E  E+LR++PKC H+FH+ CID WL +
Sbjct: 99  DKTAIESLPLFRFS-ALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLEQ 158

Query: 128 QSTCPVCR 132
            +TCP+CR
Sbjct: 159 HATCPLCR 165

[Close]
BLAST of Carg11109 vs. Swiss-Prot
Match: sp|Q9LF64|ATL52_ARATH (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-15
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0 

Query: 36  SSHSNSPNYEIESRVDLEQQPESRVSGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSE 95
           SS + + N+  E      Q+  +   GL   +I +I   K+       V+ + CS+CLSE
Sbjct: 90  SSETLNLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYK-SGDGFVDGSDCSVCLSE 149

Query: 96  YEEKEVLRIIPKCGHSFHLACIDVWLRKQSTCPVCR 132
           +EE E LR++PKC H+FHL CID WL+  S CP+CR
Sbjct: 150 FEENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCR 184

[Close]
BLAST of Carg11109 vs. Swiss-Prot
Match: sp|Q9SL78|ATL12_ARATH (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 44/126 (34.92%), Postives = 71/126 (56.35%), Query Frame = 0 

Query: 8   LITTVIGFGMSATFIVFVCTRIICGRLRS-SHSNSPNYEIESRVDLEQQPESRVSGLEPV 67
           +IT V     + TF++ V  +     LRS + S+      +          SR SGL+  
Sbjct: 43  IITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDKK 102

Query: 68  LIAAIPTMKFDLEAFSSVEDA-QCSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRKQS 127
            I ++P  +F   A   ++   +CS+CLS++E+ E+LR++PKC H+FH+ CID WL + +
Sbjct: 103 AIESLPFFRF--SALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQHA 162

Query: 128 TCPVCR 132
           TCP+CR
Sbjct: 163 TCPLCR 166

[Close]
BLAST of Carg11109 vs. Swiss-Prot
Match: sp|O22255|ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.6e-15
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 0 

Query: 89  CSICLSEYEEKEVLRIIPKCGHSFHLACIDVWLRKQSTCPVCRLPLQDTFR 140
           CS+CLSE+EE++  R++PKCGHSFH+ CID W R +STCP+CR P+Q  F+
Sbjct: 108 CSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCRAPVQPPFQ 158

[Close]
BLAST of Carg11109 vs. TrEMBL
Match: tr|A0A0A0K9N8|A0A0A0K9N8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 7.3e-90
Identity = 168/203 (82.76%), Postives = 177/203 (87.19%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITTVIGFGMSATFIVFVCTRIICGRLRS+ SN+PNYEIESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPTM FD EAFSS+EDAQCSICL EYEEKEVLRI+PKCGHSFHL CIDVW
Sbjct: 61  SGLEPVLIAAIPTMTFDREAFSSIEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQSTCPVCRLPLQD+FRTKP  PMTVSRDQSFDGSEISTDHHSQHWL        GNT
Sbjct: 121 LRKQSTCPVCRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SSQEQLESVPVNPIVGGEMTTRQ 198
           S+Q QL+ +PVNP    EM T Q
Sbjct: 181 SNQSQLQPIPVNPAAQREMETIQ 203

[Close]
BLAST of Carg11109 vs. TrEMBL
Match: tr|A0A1S3CBG3|A0A1S3CBG3_CUCME (RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 2.8e-89
Identity = 167/203 (82.27%), Postives = 176/203 (86.70%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITTVIGFGMSATFIVFVCTRIICGRLRS+ SN+PNYEIESR+DLEQQPESR 
Sbjct: 1   MTGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSAQSNTPNYEIESRLDLEQQPESRA 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVLIAAIPT KFD EAFSS EDAQCSICL EYEEKEVLRI+PKCGHSFHL CIDVW
Sbjct: 61  SGLEPVLIAAIPTTKFDQEAFSSAEDAQCSICLGEYEEKEVLRIMPKCGHSFHLTCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQSTCP+CRLPLQD+FRTKP  PMTVSRDQSFDGSEISTDHHSQHWL        GNT
Sbjct: 121 LRKQSTCPICRLPLQDSFRTKPARPMTVSRDQSFDGSEISTDHHSQHWLLPGPNRSEGNT 180

Query: 181 SSQEQLESVPVNPIVGGEMTTRQ 198
           S+Q QL+ +PVNP    EM T Q
Sbjct: 181 SNQSQLQPIPVNPSAQREMETIQ 203

[Close]
BLAST of Carg11109 vs. TrEMBL
Match: tr|A0A067JXT5|A0A067JXT5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14463 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 3.3e-66
Identity = 139/203 (68.47%), Postives = 157/203 (77.34%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITTVIGFGMSATFIVFVCTRIICGRLR+S S    +EIESR+DLEQQPE R+
Sbjct: 1   MFGSGMNLITTVIGFGMSATFIVFVCTRIICGRLRASESRQ-MFEIESRIDLEQQPEHRI 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           +GLEPVL+AAIPTMKF  EAFSSVEDAQCSICL EY+EKEVLRI+PKCGH+FHL+CIDVW
Sbjct: 61  NGLEPVLVAAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSR-DQSFDGSEISTDHHSQHWL------QLGN 180
           LRKQSTCPVCR P++D+  TK V   T+SR  +S D  E S + HSQ WL       LG 
Sbjct: 121 LRKQSTCPVCRFPVEDSLETKHVRQATLSRMVRSIDSPETSAE-HSQQWLLPGPERSLGT 180

Query: 181 TSSQEQLESVPVNP-IVGGEMTT 196
            S+Q    SVP NP +V  E  T
Sbjct: 181 ASNQRHAVSVPGNPQLVSAESQT 201

[Close]
BLAST of Carg11109 vs. TrEMBL
Match: tr|A0A2P5EI44|A0A2P5EI44_9ROSA (43kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_190510 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.6e-66
Identity = 138/211 (65.40%), Postives = 157/211 (74.41%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  +GMNLITTVIGFGMSATFIVFVCTRIICGRLR + S  P +EIESR+DLE QPE + 
Sbjct: 1   MVGAGMNLITTVIGFGMSATFIVFVCTRIICGRLRRNESR-PMFEIESRIDLE-QPEHQA 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVL+AAIPTMKF+ EAFSS+ED QCSICL EY+EKEVLRI+PKCGH+FHL+CIDVW
Sbjct: 61  SGLEPVLVAAIPTMKFNHEAFSSIEDTQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQ+TCPVCRLPLQ++F TK   P+  +  QSFD SE     HSQ WL       +GN 
Sbjct: 121 LRKQATCPVCRLPLQESFGTKHARPVMFTTAQSFDESENVPSEHSQQWLLPGPERSVGNN 180

Query: 181 SSQEQ----LESVPVN----PIVGGEMTTRQ 198
           S+Q Q    LE  P      P   GE  TRQ
Sbjct: 181 SNQSQRPLELEQSPAGNHSVPTTSGESETRQ 209

[Close]
BLAST of Carg11109 vs. TrEMBL
Match: tr|A0A2C9WP68|A0A2C9WP68_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G262200 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.6e-66
Identity = 135/203 (66.50%), Postives = 157/203 (77.34%), Query Frame = 0 

Query: 1   MPSSGMNLITTVIGFGMSATFIVFVCTRIICGRLRSSHSNSPNYEIESRVDLEQQPESRV 60
           M  SGMNLITT+IGFGMSATFIVFVCTRIICGR+R+S S    +EIESR+DLE QPE R+
Sbjct: 1   MLGSGMNLITTIIGFGMSATFIVFVCTRIICGRIRASESRQ-MFEIESRIDLE-QPEHRI 60

Query: 61  SGLEPVLIAAIPTMKFDLEAFSSVEDAQCSICLSEYEEKEVLRIIPKCGHSFHLACIDVW 120
           SGLEPVL++AIPTMKF  EAFSSVEDAQCSICL EY+EKEVLRI+PKCGH+FHL+CIDVW
Sbjct: 61  SGLEPVLVSAIPTMKFSREAFSSVEDAQCSICLGEYQEKEVLRIMPKCGHNFHLSCIDVW 120

Query: 121 LRKQSTCPVCRLPLQDTFRTKPVIPMTVSRDQSFDGSEISTDHHSQHWL------QLGNT 180
           LRKQSTCPVCR P+QD+  TK +    +S  +S D  E ST+ HS+ WL       +GN 
Sbjct: 121 LRKQSTCPVCRFPIQDSLETKRLRQSAISMVRSIDSPETSTE-HSRQWLLPGSDRSVGNA 180

Query: 181 SSQEQLESVPVNP-IVGGEMTTR 197
           S Q   ++VP NP I  GE  TR
Sbjct: 181 SHQRHPDTVPGNPEIASGEQQTR 200

The following BLAST results are available for this feature:
BLAST of Carg11109 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964478.14.9e-10698.48RING-H2 finger protein ATL5-like [Cucurbita moschata][more]
XP_023513497.14.9e-10698.48RING-H2 finger protein ATL5-like [Cucurbita pepo subsp. pepo][more]
XP_022999844.14.2e-10597.46RING-H2 finger protein ATL5-like [Cucurbita maxima][more]
XP_004153610.11.1e-8982.76PREDICTED: RING-H2 finger protein ATL5-like [Cucumis sativus] >KGN46203.1 hypoth... [more]
XP_008460164.14.2e-8982.27PREDICTED: RING-H2 finger protein ATL5-like [Cucumis melo][more]
BLAST of Carg11109 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G33565.13.6e-1848.68RING/U-box superfamily protein[more]
AT3G62690.11.4e-1744.44AtL5[more]
AT4G28890.16.8e-1732.81RING/U-box superfamily protein[more]
AT5G17600.11.5e-1640.63RING/U-box superfamily protein[more]
AT2G20030.12.0e-1634.92RING/U-box superfamily protein[more]
BLAST of Carg11109 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LZJ6|ATL5_ARATH2.5e-1644.44RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1[more]
sp|Q5XF85|ATL42_ARATH1.2e-1532.81E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ... [more]
sp|Q9LF64|ATL52_ARATH2.7e-1540.63RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1[more]
sp|Q9SL78|ATL12_ARATH3.6e-1534.92Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P... [more]
sp|O22255|ATL64_ARATH3.6e-1560.78RING-H2 finger protein ATL64 OS=Arabidopsis thaliana OX=3702 GN=ATL64 PE=2 SV=1[more]
BLAST of Carg11109 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K9N8|A0A0A0K9N8_CUCSA7.3e-9082.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G074560 PE=4 SV=1[more]
tr|A0A1S3CBG3|A0A1S3CBG3_CUCME2.8e-8982.27RING-H2 finger protein ATL5-like OS=Cucumis melo OX=3656 GN=LOC103499057 PE=4 SV... [more]
tr|A0A067JXT5|A0A067JXT5_JATCU3.3e-6668.47Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14463 PE=4 SV=1[more]
tr|A0A2P5EI44|A0A2P5EI44_9ROSA9.6e-6665.4043kDa postsynaptic protein OS=Trema orientalis OX=63057 GN=TorRG33x02_190510 PE=... [more]
tr|A0A2C9WP68|A0A2C9WP68_MANES9.6e-6666.50Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_01G262200 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg11109-RACarg11109-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 89..130
e-value: 8.7E-9
score: 45.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 88..131
e-value: 1.2E-14
score: 54.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 89..131
score: 13.315
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 65..140
e-value: 5.7E-22
score: 78.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..197
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 5..164
NoneNo IPR availablePANTHERPTHR14155:SF160SUBFAMILY NOT NAMEDcoord: 5..164
NoneNo IPR availableCDDcd16461RING-H2_EL5_likecoord: 88..131
e-value: 2.73322E-17
score: 71.5723
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 79..143

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg11109Cla006928Watermelon (97103) v1carwmB1079
Carg11109Csa6G074560Cucumber (Chinese Long) v2carcuB1096
Carg11109MELO3C022529Melon (DHL92) v3.5.1carmeB1043
Carg11109ClCG06G000090Watermelon (Charleston Gray)carwcgB1048
Carg11109CSPI06G05530Wild cucumber (PI 183967)carcpiB1118
Carg11109Cucsa.363140Cucumber (Gy14) v1carcgyB1193
Carg11109CmaCh08G009330Cucurbita maxima (Rimu)carcmaB1495
Carg11109CmaCh17G000140Cucurbita maxima (Rimu)carcmaB1488
Carg11109CmoCh17G000170Cucurbita moschata (Rifu)carcmoB1447
Carg11109CmoCh08G009010Cucurbita moschata (Rifu)carcmoB1452
Carg11109Lsi09G019330Bottle gourd (USVL1VR-Ls)carlsiB979
Carg11109Cp4.1LG12g00150Cucurbita pepo (Zucchini)carcpeB1500
Carg11109CsGy6G005470Cucumber (Gy14) v2carcgybB1061
Carg11109MELO3C022529.2Melon (DHL92) v3.6.1carmedB1057
Carg11109CsaV3_6G005840Cucumber (Chinese Long) v3carcucB1129
Carg11109Cla97C06G109350Watermelon (97103) v2carwmbB1135
Carg11109BhiUN123G50Wax gourdcarwgoB1272
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg11109Carg10217Silver-seed gourdcarcarB270
The following block(s) are covering this gene:
GeneOrganismBlock
Carg11109Silver-seed gourdcarcarB267
Carg11109Cucurbita maxima (Rimu)carcmaB1490
Carg11109Cucurbita pepo (Zucchini)carcpeB1503
Carg11109Wild cucumber (PI 183967)carcpiB1116
Carg11109Cucumber (Chinese Long) v2carcuB1094
Carg11109Cucumber (Chinese Long) v3carcucB1127
Carg11109Watermelon (97103) v1carwmB1076
Carg11109Watermelon (97103) v2carwmbB1132