CmaCh13G007540 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G007540
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionAnkyrin repeat family protein
LocationCma_Chr13 : 6594486 .. 6594973 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTGTTTTTACCCGAAAAATTTAATTTTTATGAATTGGGTCGGATAGAAATACCCTTCTAGTTTAGTCAAAATTCATAATCATGACGTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTTTTTTTTTTTTTTTTTTTTCATTCTACAGATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

mRNA sequence

ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

Coding sequence (CDS)

ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

Protein sequence

MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMALEINEQMELLLSAIATDHYGLYSFAYFKVERDVNDDTH
Homology
[Close]
BLAST of CmaCh13G007540 vs. TrEMBL
Match: E5GC67_CUCME (Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-16
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGL 62
           +DHYGL
Sbjct: 240 SDHYGL 245

[Close]
BLAST of CmaCh13G007540 vs. TrEMBL
Match: A0A0A0LUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]
BLAST of CmaCh13G007540 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKE---MALEINEQMELLLSAIATD 60
           +V K+  L LIRGSGNATPVL AARY+H  MVSYL  +     L   EQMELLL AI+ D
Sbjct: 187 LVIKYKALPLIRGSGNATPVLIAARYKHKDMVSYLLSQTPVYGLAREEQMELLLGAISAD 246

Query: 61  HYGLYSFAYF 68
           +YG   F+ F
Sbjct: 247 YYGNSKFSSF 256

[Close]
BLAST of CmaCh13G007540 vs. TrEMBL
Match: A0A0A0LX18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           MV +H  LVL RGSGNA P+L AARY+  HMVSYL K M      L   ++ E+L S I+
Sbjct: 83  MVDRHEELVLKRGSGNALPLLIAARYKQFHMVSYLLKAMNSHIKKLNDTDKKEILFSVIS 142

Query: 61  TDHYG-----LYSFAYFKVERDVNDDT 78
           ++ Y      L    +  +ERD ND+T
Sbjct: 143 SNDYDIALLILKENDHLALERDDNDNT 169

[Close]
BLAST of CmaCh13G007540 vs. NCBI nr
Match: gi|307136229|gb|ADN34066.1| (ankyrin repeat family protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGL 62
           +DHYGL
Sbjct: 240 SDHYGL 245

[Close]
BLAST of CmaCh13G007540 vs. NCBI nr
Match: gi|659067708|ref|XP_008440886.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 52/87 (59.77%), Postives = 61/87 (70.11%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGLYSFAY-----FKVERDVNDDT 78
           +DHY +            + RD NDDT
Sbjct: 240 SDHYDIAFLIINWNKSLALIRDSNDDT 266

[Close]
BLAST of CmaCh13G007540 vs. NCBI nr
Match: gi|778664857|ref|XP_011648419.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]
BLAST of CmaCh13G007540 vs. NCBI nr
Match: gi|700209406|gb|KGN64502.1| (hypothetical protein Csa_1G062280 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]
BLAST of CmaCh13G007540 vs. NCBI nr
Match: gi|700209401|gb|KGN64497.1| (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKE---MALEINEQMELLLSAIATD 60
           +V K+  L LIRGSGNATPVL AARY+H  MVSYL  +     L   EQMELLL AI+ D
Sbjct: 187 LVIKYKALPLIRGSGNATPVLIAARYKHKDMVSYLLSQTPVYGLAREEQMELLLGAISAD 246

Query: 61  HYGLYSFAYF 68
           +YG   F+ F
Sbjct: 247 YYGNSKFSSF 256

The following BLAST results are available for this feature:
BLAST of CmaCh13G007540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh13G007540 vs. TrEMBL
Match NameE-valueIdentityDescription
E5GC67_CUCME7.4e-1672.73Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A0A0LUS0_CUCSA1.8e-1456.67Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1[more]
A0A0A0LUR7_CUCSA1.4e-0957.14Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1[more]
A0A0A0LX18_CUCSA2.2e-0744.83Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1[more]
BLAST of CmaCh13G007540 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh13G007540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|307136229|gb|ADN34066.1|1.1e-1572.73ankyrin repeat family protein [Cucumis melo subsp. melo][more]
gi|659067708|ref|XP_008440886.1|1.8e-1559.77PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo][more]
gi|778664857|ref|XP_011648419.1|2.6e-1456.67PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus][more]
gi|700209406|gb|KGN64502.1|2.6e-1456.67hypothetical protein Csa_1G062280 [Cucumis sativus][more]
gi|700209401|gb|KGN64497.1|2.0e-0957.14hypothetical protein Csa_1G059760 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G007540.1CmaCh13G007540.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G007540Csa1G059760Cucumber (Chinese Long) v2cmacuB218
CmaCh13G007540CSPI01G10400Wild cucumber (PI 183967)cmacpiB219
CmaCh13G007540CmoCh13G007840Cucurbita moschata (Rifu)cmacmoB218
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G007540Cucumber (Chinese Long) v3cmacucB0249
CmaCh13G007540Cucumber (Chinese Long) v3cmacucB0265
CmaCh13G007540Watermelon (97103) v2cmawmbB212
CmaCh13G007540Watermelon (97103) v2cmawmbB228
CmaCh13G007540Wax gourdcmawgoB0257
CmaCh13G007540Wax gourdcmawgoB0270
CmaCh13G007540Cucurbita maxima (Rimu)cmacmaB209
CmaCh13G007540Cucurbita maxima (Rimu)cmacmaB231
CmaCh13G007540Cucurbita maxima (Rimu)cmacmaB238
CmaCh13G007540Cucumber (Gy14) v1cgycmaB0035
CmaCh13G007540Cucumber (Gy14) v1cgycmaB0162
CmaCh13G007540Cucurbita moschata (Rifu)cmacmoB219
CmaCh13G007540Cucurbita moschata (Rifu)cmacmoB223
CmaCh13G007540Cucurbita moschata (Rifu)cmacmoB235
CmaCh13G007540Cucurbita moschata (Rifu)cmacmoB240
CmaCh13G007540Wild cucumber (PI 183967)cmacpiB231
CmaCh13G007540Cucumber (Chinese Long) v2cmacuB229
CmaCh13G007540Melon (DHL92) v3.5.1cmameB192
CmaCh13G007540Melon (DHL92) v3.5.1cmameB211
CmaCh13G007540Watermelon (Charleston Gray)cmawcgB185
CmaCh13G007540Watermelon (Charleston Gray)cmawcgB197
CmaCh13G007540Watermelon (97103) v1cmawmB188
CmaCh13G007540Watermelon (97103) v1cmawmB201
CmaCh13G007540Cucurbita pepo (Zucchini)cmacpeB212
CmaCh13G007540Cucurbita pepo (Zucchini)cmacpeB219
CmaCh13G007540Cucurbita pepo (Zucchini)cmacpeB232
CmaCh13G007540Cucurbita pepo (Zucchini)cmacpeB234
CmaCh13G007540Bottle gourd (USVL1VR-Ls)cmalsiB199
CmaCh13G007540Bottle gourd (USVL1VR-Ls)cmalsiB207
CmaCh13G007540Cucumber (Gy14) v2cgybcmaB074
CmaCh13G007540Cucumber (Gy14) v2cgybcmaB726
CmaCh13G007540Melon (DHL92) v3.6.1cmamedB233
CmaCh13G007540Melon (DHL92) v3.6.1cmamedB213
CmaCh13G007540Silver-seed gourdcarcmaB0691
CmaCh13G007540Silver-seed gourdcarcmaB0906
CmaCh13G007540Silver-seed gourdcarcmaB1274
CmaCh13G007540Silver-seed gourdcarcmaB1393