CmaCh13G007540.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G007540.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ankyrin repeat family protein
Location	Cma_Chr13 : 6594486 .. 6594973 (-)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTGTTTTTACCCGAAAAATTTAATTTTTATGAATTGGGTCGGATAGAAATACCCTTCTAGTTTAGTCAAAATTCATAATCATGACGTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTTTTTTTTTTTTTTTTTTTTCATTCTACAGATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

mRNA sequence

ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

Coding sequence (CDS)

ATGGTGCAAAAGCATAACAATTTAGTACTAATTCGTGGGTCTGGAAATGCCACTCCTGTTTTAAATGCTGCCAGATATGAACACAACCATATGGTTTCTTATCTCTACAAAGAGATGGCTTTGGAAATTAACGAGCAAATGGAGCTTCTTCTTAGTGCCATTGCCACCGATCATTACGGTTTATATAGCTTTGCTTATTTTAAAGTGGAACGAGACGTCAATGACGATACACACTGA

Protein sequence

MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMALEINEQMELLLSAIATDHYGLYSFAYFKVERDVNDDTH

Homology

[Close]

BLAST of CmaCh13G007540.1 vs. TrEMBL
Match: E5GC67_CUCME (Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-16
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGL 62
           +DHYGL
Sbjct: 240 SDHYGL 245

[Close]

BLAST of CmaCh13G007540.1 vs. TrEMBL
Match: A0A0A0LUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.8e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]

BLAST of CmaCh13G007540.1 vs. TrEMBL
Match: A0A0A0LUR7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-09
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKE---MALEINEQMELLLSAIATD 60
           +V K+  L LIRGSGNATPVL AARY+H  MVSYL  +     L   EQMELLL AI+ D
Sbjct: 187 LVIKYKALPLIRGSGNATPVLIAARYKHKDMVSYLLSQTPVYGLAREEQMELLLGAISAD 246

Query: 61  HYGLYSFAYF 68
           +YG   F+ F
Sbjct: 247 YYGNSKFSSF 256

[Close]

BLAST of CmaCh13G007540.1 vs. TrEMBL
Match: A0A0A0LX18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.2e-07
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           MV +H  LVL RGSGNA P+L AARY+  HMVSYL K M      L   ++ E+L S I+
Sbjct: 83  MVDRHEELVLKRGSGNALPLLIAARYKQFHMVSYLLKAMNSHIKKLNDTDKKEILFSVIS 142

Query: 61  TDHYG-----LYSFAYFKVERDVNDDT 78
           ++ Y      L    +  +ERD ND+T
Sbjct: 143 SNDYDIALLILKENDHLALERDDNDNT 169

[Close]

BLAST of CmaCh13G007540.1 vs. NCBI nr
Match: gi|307136229|gb|ADN34066.1| (ankyrin repeat family protein [Cucumis melo subsp. melo])

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-15
Identity = 48/66 (72.73%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGL 62
           +DHYGL
Sbjct: 240 SDHYGL 245

[Close]

BLAST of CmaCh13G007540.1 vs. NCBI nr
Match: gi|659067708|ref|XP_008440886.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-15
Identity = 52/87 (59.77%), Postives = 61/87 (70.11%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEMAL-----EINEQMELLLSAIA 60
           MV+KHN+LVL RGS NATPVL AARY+H+HMVS+L K M L     EI+EQMELLLSAIA
Sbjct: 180 MVRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKAMDLIVQKMEISEQMELLLSAIA 239

Query: 61  TDHYGLYSFAY-----FKVERDVNDDT 78
           +DHY +            + RD NDDT
Sbjct: 240 SDHYDIAFLIINWNKSLALIRDSNDDT 266

[Close]

BLAST of CmaCh13G007540.1 vs. NCBI nr
Match: gi|778664857|ref|XP_011648419.1| (PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]

BLAST of CmaCh13G007540.1 vs. NCBI nr
Match: gi|700209406|gb|KGN64502.1| (hypothetical protein Csa_1G062280 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.6e-14
Identity = 51/90 (56.67%), Postives = 62/90 (68.89%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKEM-----ALEINEQMELLLSAIA 60
           M +KHN+LVL RGS NATPVL AARY+H+HMVS+L K M      +EI+EQMELLLSAIA
Sbjct: 164 MFRKHNDLVLTRGSANATPVLIAARYKHSHMVSFLLKSMNKIVQKMEISEQMELLLSAIA 223

Query: 61  TDHYGLYSFAYFKVE--------RDVNDDT 78
           +DHY +   A+  +E        RD ND T
Sbjct: 224 SDHYDI---AFLIIEWNKSLALIRDSNDYT 250

[Close]

BLAST of CmaCh13G007540.1 vs. NCBI nr
Match: gi|700209401|gb|KGN64497.1| (hypothetical protein Csa_1G059760 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 1


Query: 1   MVQKHNNLVLIRGSGNATPVLNAARYEHNHMVSYLYKE---MALEINEQMELLLSAIATD 60
           +V K+  L LIRGSGNATPVL AARY+H  MVSYL  +     L   EQMELLL AI+ D
Sbjct: 187 LVIKYKALPLIRGSGNATPVLIAARYKHKDMVSYLLSQTPVYGLAREEQMELLLGAISAD 246

Query: 61  HYGLYSFAYF 68
           +YG   F+ F
Sbjct: 247 YYGNSKFSSF 256

The following BLAST results are available for this feature:

BLAST of CmaCh13G007540.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh13G007540.1 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GC67_CUCME	7.4e-16	72.73	Ankyrin repeat family protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
A0A0A0LUS0_CUCSA	1.8e-14	56.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G062280 PE=4 SV=1	[more]
A0A0A0LUR7_CUCSA	1.4e-09	57.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G059760 PE=4 SV=1	[more]
A0A0A0LX18_CUCSA	2.2e-07	44.83	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G060780 PE=4 SV=1	[more]

BLAST of CmaCh13G007540.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh13G007540.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|307136229\|gb\|ADN34066.1\|	1.1e-15	72.73	ankyrin repeat family protein [Cucumis melo subsp. melo]	[more]
gi\|659067708\|ref\|XP_008440886.1\|	1.8e-15	59.77	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis melo]	[more]
gi\|778664857\|ref\|XP_011648419.1\|	2.6e-14	56.67	PREDICTED: ankyrin repeat-containing protein At5g02620-like [Cucumis sativus]	[more]
gi\|700209406\|gb\|KGN64502.1\|	2.6e-14	56.67	hypothetical protein Csa_1G062280 [Cucumis sativus]	[more]
gi\|700209401\|gb\|KGN64497.1\|	2.0e-09	57.14	hypothetical protein Csa_1G059760 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G007540	CmaCh13G007540	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007540.1	CmaCh13G007540.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007540.1.CDS.2	CmaCh13G007540.1.CDS.2	CDS
CmaCh13G007540.1.CDS.1	CmaCh13G007540.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G007540.1.exon.2	CmaCh13G007540.1.exon.2	exon
CmaCh13G007540.1.exon.1	CmaCh13G007540.1.exon.1	exon