CmaCh13G000680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G000680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNudC domain-containing protein 2
LocationCma_Chr13 : 548842 .. 551323 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCAATTGGATCTTCTGAATTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTCGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTTAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATCGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATTCTCACTTTAATGACTAAATGGAGTCTTGGTTGTTATACTTTTACACCAAACAAATTTCATGGGACTGAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAATGTAATTGTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGGTCTGTTCTTTTTTTTACTCTAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGCGTTTTTATTCGAAGATCGATTGTTTCAATTATCCAAATAGATTTTTCATCCTACGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTAATGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATGTGCCTTGTCATAACTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATAGGAAAGCTTTCCATAAAATGTTAATGATTTGATAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTGTGTGAGCTGCAGTTCCAGAGGTCGTTAACAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAAATAATGTAGAGTAGCTGAAACATTCTTCCAAAGTTTGCTTCCGATAAGAGAGGGCCTGGTCTAATCTATACATCACTAAGGTCCATTGAGAGCATACTCTGCAAGTGTTCTTTTGTTTTTTTTTTTTCTTTTTTTAAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACTATTGTGAGAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTGCTTTCCTTTAGATAGAGGTCTTCCTTCAAGGCACTCACGGGATGACTTGAACCTTTGGCGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGGTTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACGACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATCCTGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCTACACACATGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGGTTATTGTTAATTACTAAAATTTTATTAGGTGCTGGTTTTATATATCCCCAATTGGCAGTGTTGTTATGTCTTTGTATGGCCTGCTATTGTAAAGTTATGATATCTTATAAAGACACAAACACATTTCTTTTTCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTATGAAATGTTGAAACTTAATCTGCATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

mRNA sequence

AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Coding sequence (CDS)

ATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Homology
[Close]
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G    L   L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

[Close]
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match: BOB1_ARATH (Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++  L   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------TTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    T++  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 38/160 (23.75%), Postives = 74/160 (46.25%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYI--NLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSS 80
           + W QTL E+++ +   +   +  K     IQ  H+ VG+KG PP ++  L   VK + S
Sbjct: 173 YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 232

Query: 81  FWTLED-DIMHITLQKRDKGQTW-----ASPIQGQGQLDPYTTDL--------------- 140
            W +ED  ++ + L+K +K + W     + P     +++P  + L               
Sbjct: 233 SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMM 292

Query: 141 ---------------EQKRLMLQRFQEENPGFDFSQAQFS 143
                          ++K+ +L++F +++P  DFS+A+F+
Sbjct: 293 YDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332

[Close]
BLAST of CmaCh13G000680 vs. TrEMBL
Match: A0A0A0LV57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TrEMBL
Match: V7BQ97_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G068000g PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-84
Identity = 144/156 (92.31%), Postives = 153/156 (98.08%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHNFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHIT+QKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TrEMBL
Match: A0A0S3S6D8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G181900 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-84
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L CPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TrEMBL
Match: C6SZU0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G063100 PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.9e-83
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNGQKVFEWDQTL+EVNIYI LPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYITLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LT PVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TrEMBL
Match: A0A0B2RR59_GLYSO (NudC domain-containing protein 2 OS=Glycine soja GN=glysoja_037236 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.9e-83
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNGQKVFEWDQTL+EVNIYI LPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYIALPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LT PVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPISGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TAIR10
Match: AT5G58740.1 (AT5G58740.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.2e-84
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. TAIR10
Match: AT5G53400.1 (AT5G53400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++  L   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------TTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    T++  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]
BLAST of CmaCh13G000680 vs. NCBI nr
Match: gi|659115075|ref|XP_008457374.1| (PREDICTED: nudC domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 4.0e-86
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. NCBI nr
Match: gi|449467493|ref|XP_004151457.1| (PREDICTED: nudC domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.6e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. NCBI nr
Match: gi|593692450|ref|XP_007146767.1| (hypothetical protein PHAVU_006G068000g [Phaseolus vulgaris])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 144/156 (92.31%), Postives = 153/156 (98.08%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHNFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHIT+QKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. NCBI nr
Match: gi|1021468355|ref|XP_016164617.1| (PREDICTED: nudC domain-containing protein 2 [Arachis ipaensis])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+H+GQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHNFVHDGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSKHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680 vs. NCBI nr
Match: gi|951040171|ref|XP_014517602.1| (PREDICTED: nudC domain-containing protein 2 [Vigna radiata var. radiata])

HSP 1 Score: 319.3 bits (817), Expect = 3.7e-84
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L CPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

The following BLAST results are available for this feature:
BLAST of CmaCh13G000680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NUDC2_HUMAN2.2e-2039.29NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1[more]
NUDC2_MOUSE2.2e-2039.29NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1[more]
NUDC2_RAT5.0e-2041.27NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1[more]
BOB1_ARATH2.2e-1227.22Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1[more]
NUDC_MOUSE1.3e-0723.75Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1[more]
BLAST of CmaCh13G000680 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV57_CUCSA1.8e-8594.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530660 PE=4 SV=1[more]
V7BQ97_PHAVU2.0e-8492.31Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G068000g PE=4 SV=1[more]
A0A0S3S6D8_PHAAN2.6e-8492.95Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G181900 PE=... [more]
C6SZU0_SOYBN2.9e-8392.95Uncharacterized protein OS=Glycine max GN=GLYMA_18G063100 PE=2 SV=1[more]
A0A0B2RR59_GLYSO2.9e-8392.95NudC domain-containing protein 2 OS=Glycine soja GN=glysoja_037236 PE=4 SV=1[more]
BLAST of CmaCh13G000680 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58740.15.2e-8489.74 HSP20-like chaperones superfamily protein[more]
AT5G53400.11.3e-1327.22 HSP20-like chaperones superfamily protein[more]
BLAST of CmaCh13G000680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115075|ref|XP_008457374.1|4.0e-8696.15PREDICTED: nudC domain-containing protein 2 [Cucumis melo][more]
gi|449467493|ref|XP_004151457.1|2.6e-8594.87PREDICTED: nudC domain-containing protein 2 [Cucumis sativus][more]
gi|593692450|ref|XP_007146767.1|2.9e-8492.31hypothetical protein PHAVU_006G068000g [Phaseolus vulgaris][more]
gi|1021468355|ref|XP_016164617.1|2.9e-8494.23PREDICTED: nudC domain-containing protein 2 [Arachis ipaensis][more]
gi|951040171|ref|XP_014517602.1|3.7e-8492.95PREDICTED: nudC domain-containing protein 2 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0032502 developmental process
biological_process GO:0006457 protein folding
cellular_component GO:0005575 cellular_component
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003674 molecular_function
molecular_function GO:0051082 unfolded protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G000680.1CmaCh13G000680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 21..93
score: 2.1
IPR007052CS domainPROFILEPS51203CScoord: 16..104
score: 15
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 19..148
score: 1.1
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 9..115
score: 1.2
NoneNo IPR availablePANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 1..157
score: 7.3
NoneNo IPR availablePANTHERPTHR12356:SF18NUDC DOMAIN-CONTAINING PROTEIN 2coord: 1..157
score: 7.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh13G000680Cla008166Watermelon (97103) v1cmawmB185
CmaCh13G000680Csa1G530660Cucumber (Chinese Long) v2cmacuB219
CmaCh13G000680MELO3C020551Melon (DHL92) v3.5.1cmameB194
CmaCh13G000680ClCG03G000770Watermelon (Charleston Gray)cmawcgB194
CmaCh13G000680CSPI01G23860Wild cucumber (PI 183967)cmacpiB220
CmaCh13G000680CmoCh13G000570Cucurbita moschata (Rifu)cmacmoB218
CmaCh13G000680CmoCh01G006940Cucurbita moschata (Rifu)cmacmoB226
CmaCh13G000680Lsi02G012850Bottle gourd (USVL1VR-Ls)cmalsiB201
CmaCh13G000680Cp4.1LG02g11830Cucurbita pepo (Zucchini)cmacpeB245
CmaCh13G000680MELO3C020551.2Melon (DHL92) v3.6.1cmamedB215
CmaCh13G000680CsaV3_1G036170Cucumber (Chinese Long) v3cmacucB0250
CmaCh13G000680Cla97C03G051580Watermelon (97103) v2cmawmbB225
CmaCh13G000680Bhi08G000423Wax gourdcmawgoB0252
CmaCh13G000680CsGy1G023340Cucumber (Gy14) v2cgybcmaB075
CmaCh13G000680Carg12428Silver-seed gourdcarcmaB0610
CmaCh13G000680Carg20603Silver-seed gourdcarcmaB0531
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh13G000680CmaCh01G006620Cucurbita maxima (Rimu)cmacmaB220
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh13G000680Bottle gourd (USVL1VR-Ls)cmalsiB196
CmaCh13G000680Cucumber (Gy14) v2cgybcmaB594
CmaCh13G000680Silver-seed gourdcarcmaB0939
CmaCh13G000680Cucumber (Chinese Long) v3cmacucB0263
CmaCh13G000680Watermelon (97103) v2cmawmbB220
CmaCh13G000680Watermelon (97103) v2cmawmbB244
CmaCh13G000680Wax gourdcmawgoB0244
CmaCh13G000680Cucurbita maxima (Rimu)cmacmaB228
CmaCh13G000680Cucurbita maxima (Rimu)cmacmaB235
CmaCh13G000680Cucurbita maxima (Rimu)cmacmaB236
CmaCh13G000680Cucumber (Gy14) v1cgycmaB0386
CmaCh13G000680Cucumber (Gy14) v1cgycmaB0402
CmaCh13G000680Cucurbita moschata (Rifu)cmacmoB238
CmaCh13G000680Cucurbita moschata (Rifu)cmacmoB232
CmaCh13G000680Cucurbita moschata (Rifu)cmacmoB239
CmaCh13G000680Wild cucumber (PI 183967)cmacpiB229
CmaCh13G000680Cucumber (Chinese Long) v2cmacuB228
CmaCh13G000680Watermelon (Charleston Gray)cmawcgB189
CmaCh13G000680Watermelon (97103) v1cmawmB209
CmaCh13G000680Cucurbita pepo (Zucchini)cmacpeB231
CmaCh13G000680Cucurbita pepo (Zucchini)cmacpeB235
CmaCh13G000680Cucurbita pepo (Zucchini)cmacpeB249