Carg20603 (gene) Silver-seed gourd

Overview
NameCarg20603
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionnudC domain-containing protein 2
LocationCucurbita_argyrosperma_scaffold_100 : 55953 .. 58786 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCAATTGGATCTTCTGAATTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTTGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTTAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATTGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATGCTCACTTGAATGACTAAACGGAATCTTGATTGTTATACTTATACACCAAATAAATTTCATGGGACTCAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAATGTAATTGTTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGGTCTGTTTTTTTTTTACTCCAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGCGTTTTTATTCGAAGATCGATTGTTTCAATTATCCCAATAGATTTTTCATCCTATGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTATTGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATGTGCCTTGTCATAATTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATTGGAAAGCTTTCTATAAAATGTTAATGATTTGACAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTCTGTGAGCTGCAGTTCCAGAGGTCGTTAAGAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAACTAATGTAGGGTAGCTGAAACATTCTTCCAAAGTTTGCTTCGGATAAGAGAGGGCCTGGTCTAATCTATACATCACTAAGGACCATTGAGAGCATACTCTGCAAGTGTTCTTTTTTTTTTTTTTTTTTCTTTTTTTCAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACAATTGTGAGAAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTCCTTTCCTTTAGATAGAGGTCTTCCTTCAAGGCACTCACGGGATGACTTGAACCTTTGACGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGGTTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACGACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATCCCGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCAACTCCCACGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGATTATTGTTAATTACTAAAGTTTTATTAGGTGCTGGTTTTATATATCGGTTTTATATATCCCGAATCGGCAGTGTTGTTATGTCTTTGTATGGCCTGCTATTGTAAAGTTATGATATCTTATAAATACACAAACACATTTCTTTTCCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTGTGAAATCTTGAAACTTAATCTGTATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGACGAAGATAGTTTTGCATTTATAACTTGCAAGGGCGTGACATTTTGCTAATGCTCGGTAAATAATGTGTAGATTTTCTACGGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGCGAAAATGATGTGTACTGGGTTTTCATGTAATCGCTGCAATGAACTGAAAATATTTATGTGATATAAATTTAACTTCCAAATATTTTGTATTATAGTTTAACCTTCTATTTGGTTTGATATAAACCAGAGTTCCAAATTTGATCGCAGATGCAAGTTCATGGTAAAAATAGCGAACCTGGTACCATCATTCTCTATATATTTGTTTATCCAAATCCTATTCAGTAAAATATGTTGA

mRNA sequence

GGAACTTCTCGTTGGAGAAAAAGGAAGGCACTGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAGCCCTAAGAAATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGACGAAGATAGTTTTGCATTTATAACTTGCAAGGGCGTGACATTTTGCTAATGCTCGGTAAATAATGTGTAGATTTTCTACGGGTCTTGATTTATGCAATCCATATAATGACTGCTATTGCGAAAATGATGTGTACTGGGTTTTCATGTAATCGCTGCAATGAACTGAAAATATTTATGTGATATAAATTTAACTTCCAAATATTTTGTATTATAGTTTAACCTTCTATTTGGTTTGATATAAACCAGAGTTCCAAATTTGATCGCAGATGCAAGTTCATGGTAAAAATAGCGAACCTGGTACCATCATTCTCTATATATTTGTTTATCCAAATCCTATTCAGTAAAATATGTTGA

Coding sequence (CDS)

ATGGCGGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTTGAGCAGAAGCGCCTTATGCTCCAGAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNVEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Homology
[Close]
BLAST of Carg20603 vs. NCBI nr
Match: XP_022964859.1 (nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC domain-containing protein 2-like [Cucurbita maxima] >XP_023518977.1 nudC domain-containing protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 295.4 bits (755), Expect = 1.0e-76
Identity = 142/158 (89.87%), Postives = 143/158 (90.51%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK
Sbjct: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 144
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG 158

[Close]
BLAST of Carg20603 vs. NCBI nr
Match: XP_008457374.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 282.3 bits (721), Expect = 8.9e-73
Identity = 135/156 (86.54%), Postives = 140/156 (89.74%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. NCBI nr
Match: XP_004151457.1 (PREDICTED: nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypothetical protein Csa_1G530660 [Cucumis sativus])

HSP 1 Score: 279.6 bits (714), Expect = 5.8e-72
Identity = 133/156 (85.26%), Postives = 140/156 (89.74%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. NCBI nr
Match: XP_019418021.1 (PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius])

HSP 1 Score: 278.9 bits (712), Expect = 9.9e-72
Identity = 132/156 (84.62%), Postives = 138/156 (88.46%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTL+EVN+YINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLDEVNMYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIVGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. NCBI nr
Match: XP_014517602.1 (nudC domain-containing protein 2 isoform X2 [Vigna radiata var. radiata] >XP_017434278.1 PREDICTED: nudC domain-containing protein 2 [Vigna angularis] >BAT88349.1 hypothetical protein VIGAN_05181900 [Vigna angularis var. angularis])

HSP 1 Score: 278.5 bits (711), Expect = 1.3e-71
Identity = 131/156 (83.97%), Postives = 139/156 (89.10%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. TAIR10
Match: AT5G58740.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 271.2 bits (692), Expect = 3.7e-73
Identity = 128/156 (82.05%), Postives = 134/156 (85.90%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]
BLAST of Carg20603 vs. TAIR10
Match: AT4G27890.1 (HSP20-like chaperones superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-10
Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG---------------NPPYL 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG               +  + 
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  NVEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 128
           N+ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

[Close]
BLAST of Carg20603 vs. Swiss-Prot
Match: sp|Q8WVJ2|NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-16
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 0 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG------- 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G       
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGREILKGK 65

Query: 68  -------NPPYLNVEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQ 127
                  +     +ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+
Sbjct: 66  LFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLE 125

Query: 128 RFQEENPGFDFSQAQFSGN 130
           RFQ+ENPGFDFS A+ SGN
Sbjct: 126 RFQKENPGFDFSGAEISGN 144

[Close]
BLAST of Carg20603 vs. Swiss-Prot
Match: sp|Q9CQ48|NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.0e-16
Identity = 49/139 (35.25%), Postives = 71/139 (51.08%), Query Frame = 0 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG------- 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G       
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGK 65

Query: 68  -------NPPYLNVEDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQ 127
                  +     +ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+
Sbjct: 66  LFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLE 125

Query: 128 RFQEENPGFDFSQAQFSGN 130
           RFQ+ENPGFDFS A+ SGN
Sbjct: 126 RFQKENPGFDFSGAEISGN 144

[Close]
BLAST of Carg20603 vs. Swiss-Prot
Match: sp|Q5M823|NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.9e-16
Identity = 46/125 (36.80%), Postives = 66/125 (52.80%), Query Frame = 0 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG--------------NPPYLNV 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G              +     +
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTL 79

Query: 82  EDDIM---HITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQA 130
           ED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS A
Sbjct: 80  EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGA 139

[Close]
BLAST of Carg20603 vs. Swiss-Prot
Match: sp|Q9STN7|BOB2_ARATH (Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 0 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG---------------NPPYL 80
           + W Q L+EV I I +P    S+   C+I+   ++VG+KG               +  + 
Sbjct: 136 YSWGQNLQEVTINIPMPEGTKSRSVTCEIKKNRLKVGLKGQDLIVDGEFFNSVKPDDCFW 195

Query: 81  NVEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPYT---------- 128
           N+ED  ++ + L K+D+ + W   ++G+               G LDP T          
Sbjct: 196 NIEDQKMISVLLTKQDQMEWWKYCVKGEPEIDTQKVEPETSKLGDLDPETRASVEKMMFD 255

[Close]
BLAST of Carg20603 vs. TrEMBL
Match: tr|A0A1S3C618|A0A1S3C618_CUCME (nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 135/156 (86.54%), Postives = 140/156 (89.74%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. TrEMBL
Match: tr|A0A0A0LV57|A0A0A0LV57_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.8e-72
Identity = 133/156 (85.26%), Postives = 140/156 (89.74%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. TrEMBL
Match: tr|A0A1S3VHB5|A0A1S3VHB5_VIGRR (nudC domain-containing protein 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106775077 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.5e-72
Identity = 131/156 (83.97%), Postives = 139/156 (89.10%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. TrEMBL
Match: tr|A0A0S3S6D8|A0A0S3S6D8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G181900 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.5e-72
Identity = 131/156 (83.97%), Postives = 139/156 (89.10%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of Carg20603 vs. TrEMBL
Match: tr|I1LLK0|I1LLK0_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G175500 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 3.2e-71
Identity = 131/156 (83.97%), Postives = 137/156 (87.82%), Query Frame = 0 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNGQKVFEWDQTL+EVNIYI LPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYIALPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLN---------------VEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLN               +EDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPISGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 142
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

The following BLAST results are available for this feature:
BLAST of Carg20603 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022964859.11.0e-7689.87nudC domain-containing protein 2-like [Cucurbita moschata] >XP_022970435.1 nudC ... [more]
XP_008457374.18.9e-7386.54PREDICTED: nudC domain-containing protein 2 [Cucumis melo][more]
XP_004151457.15.8e-7285.26PREDICTED: nudC domain-containing protein 2 [Cucumis sativus] >KGN65805.1 hypoth... [more]
XP_019418021.19.9e-7284.62PREDICTED: nudC domain-containing protein 2 [Lupinus angustifolius][more]
XP_014517602.11.3e-7183.97nudC domain-containing protein 2 isoform X2 [Vigna radiata var. radiata] >XP_017... [more]
BLAST of Carg20603 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58740.13.7e-7382.05HSP20-like chaperones superfamily protein[more]
AT4G27890.17.7e-1025.95HSP20-like chaperones superfamily protein[more]
BLAST of Carg20603 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8WVJ2|NUDC2_HUMAN4.0e-1635.25NudC domain-containing protein 2 OS=Homo sapiens OX=9606 GN=NUDCD2 PE=1 SV=1[more]
sp|Q9CQ48|NUDC2_MOUSE4.0e-1635.25NudC domain-containing protein 2 OS=Mus musculus OX=10090 GN=Nudcd2 PE=1 SV=1[more]
sp|Q5M823|NUDC2_RAT8.9e-1636.80NudC domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Nudcd2 PE=2 SV... [more]
sp|Q9STN7|BOB2_ARATH1.4e-0825.95Protein BOBBER 2 OS=Arabidopsis thaliana OX=3702 GN=BOB2 PE=2 SV=1[more]
BLAST of Carg20603 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3C618|A0A1S3C618_CUCME5.9e-7386.54nudC domain-containing protein 2 OS=Cucumis melo OX=3656 GN=LOC103497082 PE=4 SV... [more]
tr|A0A0A0LV57|A0A0A0LV57_CUCSA3.8e-7285.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G530660 PE=4 SV=1[more]
tr|A0A1S3VHB5|A0A1S3VHB5_VIGRR8.5e-7283.97nudC domain-containing protein 2 OS=Vigna radiata var. radiata OX=3916 GN=LOC106... [more]
tr|A0A0S3S6D8|A0A0S3S6D8_PHAAN8.5e-7283.97Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.05G... [more]
tr|I1LLK0|I1LLK0_SOYBN3.2e-7183.97Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_11G175500 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR037898NudC_fam
IPR008978HSP20-like_chaperone
IPR007052CS_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg20603-RACarg20603-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 21..69
e-value: 9.8E-8
score: 32.8
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 17..72
e-value: 3.2E-14
score: 54.9
IPR008978HSP20-like chaperoneSUPERFAMILYSSF49764HSP20-like chaperonescoord: 20..120
IPR037898NudC familyPANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 1..129
NoneNo IPR availablePANTHERPTHR12356:SF18NUDC DOMAIN-CONTAINING PROTEIN 2coord: 1..129
NoneNo IPR availableCDDcd06467p23_NUDC_likecoord: 21..89
e-value: 1.21133E-22
score: 85.677