CmaCh13G000680.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G000680.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNudC domain-containing protein 2
LocationCma_Chr13 : 548842 .. 551323 (-)
Sequence length580
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTTTTCTCTCTACTCTTATCAATTGGATCTTCTGAATTTTCAATTTGAACGAATGAATTCAATGTTGTATGAGTCTTTTGATCTCTGTGCTCGCTTGGTCGTGGTTTTTCAGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATGTCGGTATCGTTGCATCTTTAAGGATTTAATTTTGAAATTTTGATCTATTGCTTCGTTTATGATCGTACCAATTGCTTTCAATCATTGATTTGCAGCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGGTGATTGCAAATTCTCACTTTAATGACTAAATGGAGTCTTGGTTGTTATACTTTTACACCAAACAAATTTCATGGGACTGAGTTTTGGTGTCTCTTTTTTATCTTCCCCTTTTAATTGCTCCACTTTTGTCTATTTTGTAATGTAATTGTTTGGTTATTTTGGGTGGCAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGGTCTGTTCTTTTTTTTACTCTAGACTTTTGATGTATTCTAGATAATATGCTTATGCTTTTGTGTTTTCCATGTTTGTTTTGATTTATGTACTTTTTGTTTCCCTTCTTGAGCATGTTTAGCGTTTTTATTCGAAGATCGATTGTTTCAATTATCCAAATAGATTTTTCATCCTACGAGGCTAGGTTTTAGTTGTTGGTGCTCATGGTTAGGAGGTTTATTTTAATGAGTAAATAGTTAGTGAGATGTTCTGATAACTTCTCGATGTTGATTTCTGGGACGAAGCTAATGTGCCTTGTCATAACTATGAGACAGATGGAGAGGCTAACCTGTCTGGAAAATCATATTCACGTTGTTGGCCTGATAAGAAGAATAGGAAAGCTTTCCATAAAATGTTAATGATTTGATAGTTTTGCAGTATAGGCTTGGTGGACTGAGTTGCTGTGTGTGAGCTGCAGTTCCAGAGGTCGTTAACAATGTAGCACAACTTATGAGAATCCCTGCGTCCTCCTCCTCCTATCCTTCAGAAAAACTTCTTCTCTGAACTCAAACATGAGATCTCCAACTTTTATCTTAAATAATGTAGAGTAGCTGAAACATTCTTCCAAAGTTTGCTTCCGATAAGAGAGGGCCTGGTCTAATCTATACATCACTAAGGTCCATTGAGAGCATACTCTGCAAGTGTTCTTTTGTTTTTTTTTTTTCTTTTTTTAAAGCCCATATCATTTGAGACATCTCTAAAAACTTATTCAGGGGCACTGCACCCAACTATTGTGAGAAAAAACTCCCAACTCAATAGACTAACTTTATGTTCGAGTGATACATTATCTGCTTTCCTTTAGATAGAGGTCTTCCTTCAAGGCACTCACGGGATGACTTGAACCTTTGGCGTGCTCTTGTACCAACTGATGTAGGATAGATGACCTGGTTTTTCCACTGTAGAAGCTGATATGAGAGAGGTCAATTATGTCTTTACCTCATCCACGACCCAGCTCAAGAGTTCACCCTGTAAGGCTACTCCATTTTGAGCCTATCTTTGGAGACAACCTATAGAACCCAATGGAGTGGAAAGAAAGGCTCCCATAACTCTATCCTGAGTTTAAGGGATGGTTTGCATCACTCGTATTTTTAAGCTTTTAGTTTTATTTTGGATGGAATAGGAATAACTATTGGGTTGCATTCAACCTTTGCATATGACGTTTCTTGTCTGATTCTGGTTTAGTAACTACAAACGTTGTCTACTCTGAATATCAAGTCTACACACATGGTGAAAGGTAGTTCATTAATTATGGATGAGAGAGTTGTTGGGTTATTGTTAATTACTAAAATTTTATTAGGTGCTGGTTTTATATATCCCCAATTGGCAGTGTTGTTATGTCTTTGTATGGCCTGCTATTGTAAAGTTATGATATCTTATAAAGACACAAACACATTTCTTTTTCTACAAGATGTCAGAAGTCCTGAATCAAGTGTCAGTTATGTTATGAAATGTTGAAACTTAATCTGCATTACTTATTTCTCTGCAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

mRNA sequence

AGCTTCGCTAGACCGGAACTTCTCGTTGGAGAAAAAGGAAGGCACAGGGAAAAGAAAAGCTTCTGTGAAATTCGCGGGAAAGGGGAGAAGCAAACCCTAAGAAATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Coding sequence (CDS)

ATGGCAGAGAAATTGGCTCCAGAAAAGCGCCATAGCTTCCTCCACAACGGTCAGAAAGTGTTTGAATGGGATCAGACTCTGGAGGAGGTTAACATTTATATTAATTTGCCTCCAAATGTTCATTCGAAGCAATTCTACTGCAAGATTCAGTCTACGCATGTCGAGGTTGGCATCAAGGGGAATCCTCCTTATCTCAATCACCATCTTACTTGCCCTGTGAAGACGGATTCTTCTTTCTGGACCTTAGAGGATGACATAATGCACATTACACTGCAGAAGAGGGACAAGGGTCAGACATGGGCTTCTCCTATACAGGGTCAGGGTCAGCTTGATCCATACACCACTGATCTCGAGCAGAAGCGCCTTATGCTCCAAAGGTTTCAAGAGGAGAACCCTGGATTTGACTTCTCACAAGCTCAGTTTTCGGGCAACTGTCCTGATCCAAGGAGCTTCATGGGGGGAATTCGCTTAGGTTGA

Protein sequence

MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIRLG
Homology
[Close]
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match: NUDC2_HUMAN (NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALSVGGRE-ILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match: NUDC2_MOUSE (NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.2e-20
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 8   EKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNH 67
           E+R   +  G    +W QTLEEV I + +PP   ++   C +QS HV + + G    L  
Sbjct: 6   EERSGVVPCGTPWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKG 65

Query: 68  HLTCPVKTDSSFWTLEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLML 127
            L      D   WTLED  M    +T  KRD    W S ++ +   DP+  D  Q++L L
Sbjct: 66  KLFDSTIADEGTWTLEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTL 125

Query: 128 QRFQEENPGFDFSQAQFSGN 145
           +RFQ+ENPGFDFS A+ SGN
Sbjct: 126 ERFQKENPGFDFSGAEISGN 144

[Close]
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match: NUDC2_RAT (NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.0e-20
Identity = 52/126 (41.27%), Postives = 70/126 (55.56%), Query Frame = 1 

Query: 22  EWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFWT 81
           +W QTLEEV I + +PP   ++   C +QS HV + + G    L   L      D   WT
Sbjct: 20  QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGRE-ILKGKLFDSTIADEGTWT 79

Query: 82  LEDDIMH---ITLQKRDKGQTWASPIQGQGQLDPYTTDLEQKRLMLQRFQEENPGFDFSQ 141
           LED  M    +T  KRD    W S ++ +   DP+  D  Q++L L+RFQ+ENPGFDFS 
Sbjct: 80  LEDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSG 139

Query: 142 AQFSGN 145
           A+ SGN
Sbjct: 140 AEISGN 144

[Close]
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match: BOB1_ARATH (Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.2e-12
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++  L   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------TTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    T++  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 38/160 (23.75%), Postives = 74/160 (46.25%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYI--NLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSS 80
           + W QTL E+++ +   +   +  K     IQ  H+ VG+KG PP ++  L   VK + S
Sbjct: 173 YRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 232

Query: 81  FWTLED-DIMHITLQKRDKGQTW-----ASPIQGQGQLDPYTTDL--------------- 140
            W +ED  ++ + L+K +K + W     + P     +++P  + L               
Sbjct: 233 SWLIEDGKVVTVHLEKINKMEWWNRLVTSDPEINTKKINPENSKLSDLDSETRSMVEKMM 292

Query: 141 ---------------EQKRLMLQRFQEENPGFDFSQAQFS 143
                          ++K+ +L++F +++P  DFS+A+F+
Sbjct: 293 YDQRQKSMGLPTSDEQKKQEILKKFMDQHPEMDFSKAKFN 332

[Close]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match: A0A0A0LV57_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530660 PE=4 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 1.8e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match: V7BQ97_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G068000g PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.0e-84
Identity = 144/156 (92.31%), Postives = 153/156 (98.08%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHNFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHIT+QKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match: A0A0S3S6D8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G181900 PE=4 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 2.6e-84
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L CPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match: C6SZU0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G063100 PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.9e-83
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNGQKVFEWDQTL+EVNIYI LPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYITLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LT PVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match: A0A0B2RR59_GLYSO (NudC domain-containing protein 2 OS=Glycine soja GN=glysoja_037236 PE=4 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.9e-83
Identity = 145/156 (92.95%), Postives = 150/156 (96.15%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNGQKVFEWDQTL+EVNIYI LPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFVHNGQKVFEWDQTLDEVNIYIALPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LT PVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTSPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPISGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TAIR10
Match: AT5G58740.1 (AT5G58740.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 307.4 bits (786), Expect = 5.2e-84
Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH F+HNGQKVFEWDQTLEEVN+YI LPPNVH K F+CKIQS H+EVGIKG
Sbjct: 1   MAEKLAPEKRHDFIHNGQKVFEWDQTLEEVNMYITLPPNVHPKSFHCKIQSKHIEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L+ PVKTD SFWTLEDDIMHITLQKR+KGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLSAPVKTDCSFWTLEDDIMHITLQKREKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. TAIR10
Match: AT5G53400.1 (AT5G53400.1 HSP20-like chaperones superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-13
Identity = 43/158 (27.22%), Postives = 74/158 (46.84%), Query Frame = 1 

Query: 21  FEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKGNPPYLNHHLTCPVKTDSSFW 80
           + W Q L+EV + I +P    ++   C+I+   ++VG+KG  P ++  L   VK D  +W
Sbjct: 147 YSWIQNLQEVTVNIPVPTGTKARTVVCEIKKNRLKVGLKGQDPIVDGELYRSVKPDDCYW 206

Query: 81  TLEDD-IMHITLQKRDKGQTWASPIQGQ---------------GQLDPY----------- 140
            +ED  ++ I L K D+ + W   ++G+               G LDP            
Sbjct: 207 NIEDQKVISILLTKSDQMEWWKCCVKGEPEIDTQKVEPETSKLGDLDPETRSTVEKMMFD 266

Query: 141 ---------TTDLEQKRLMLQRFQEENPGFDFSQAQFS 143
                    T++  QK+ +L++F  E+P  DFS A+F+
Sbjct: 267 QRQKQMGLPTSEELQKQEILKKFMSEHPEMDFSNAKFN 304

[Close]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match: gi|659115075|ref|XP_008457374.1| (PREDICTED: nudC domain-containing protein 2 [Cucumis melo])

HSP 1 Score: 325.9 bits (834), Expect = 4.0e-86
Identity = 150/156 (96.15%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match: gi|449467493|ref|XP_004151457.1| (PREDICTED: nudC domain-containing protein 2 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 2.6e-85
Identity = 148/156 (94.87%), Postives = 154/156 (98.72%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSFLHNGQ+VFEWDQTLEEVNIYINLPPNV+SKQFYCKIQS HVE+GIKG
Sbjct: 1   MAEKLAPEKRHSFLHNGQEVFEWDQTLEEVNIYINLPPNVNSKQFYCKIQSRHVELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPY++DLEQK
Sbjct: 61  NPPYLNHELTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYSSDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match: gi|593692450|ref|XP_007146767.1| (hypothetical protein PHAVU_006G068000g [Phaseolus vulgaris])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 144/156 (92.31%), Postives = 153/156 (98.08%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHNFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLEDDIMHIT+QKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDDIMHITMQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match: gi|1021468355|ref|XP_016164617.1| (PREDICTED: nudC domain-containing protein 2 [Arachis ipaensis])

HSP 1 Score: 319.7 bits (818), Expect = 2.9e-84
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRH+F+H+GQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQS HVEVGIKG
Sbjct: 1   MAEKLAPEKRHNFVHDGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSKHVEVGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH LTCPVKTDSSFWTLED IMHITLQKRDKGQTWASPI GQGQLDPY TDLEQK
Sbjct: 61  NPPYLNHDLTCPVKTDSSFWTLEDGIMHITLQKRDKGQTWASPILGQGQLDPYATDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

[Close]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match: gi|951040171|ref|XP_014517602.1| (PREDICTED: nudC domain-containing protein 2 [Vigna radiata var. radiata])

HSP 1 Score: 319.3 bits (817), Expect = 3.7e-84
Identity = 145/156 (92.95%), Postives = 152/156 (97.44%), Query Frame = 1 

Query: 1   MAEKLAPEKRHSFLHNGQKVFEWDQTLEEVNIYINLPPNVHSKQFYCKIQSTHVEVGIKG 60
           MAEKLAPEKRHSF+HNG+KVFEWDQTL+EVNIYINLPPNVHSKQFYCKIQS H+E+GIKG
Sbjct: 1   MAEKLAPEKRHSFIHNGEKVFEWDQTLDEVNIYINLPPNVHSKQFYCKIQSKHLELGIKG 60

Query: 61  NPPYLNHHLTCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPIQGQGQLDPYTTDLEQK 120
           NPPYLNH L CPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPI GQGQLDPY+TDLEQK
Sbjct: 61  NPPYLNHDLPCPVKTDSSFWTLEDDIMHITLQKRDKGQTWASPILGQGQLDPYSTDLEQK 120

Query: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRSFMGGIR 157
           RLMLQRFQEENPGFDFSQAQFSGNCPDPR+FMGGIR
Sbjct: 121 RLMLQRFQEENPGFDFSQAQFSGNCPDPRTFMGGIR 156

The following BLAST results are available for this feature:
BLAST of CmaCh13G000680.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NUDC2_HUMAN2.2e-2039.29NudC domain-containing protein 2 OS=Homo sapiens GN=NUDCD2 PE=1 SV=1[more]
NUDC2_MOUSE2.2e-2039.29NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1[more]
NUDC2_RAT5.0e-2041.27NudC domain-containing protein 2 OS=Rattus norvegicus GN=Nudcd2 PE=2 SV=1[more]
BOB1_ARATH2.2e-1227.22Protein BOBBER 1 OS=Arabidopsis thaliana GN=BOB1 PE=1 SV=1[more]
NUDC_MOUSE1.3e-0723.75Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1[more]
BLAST of CmaCh13G000680.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LV57_CUCSA1.8e-8594.87Uncharacterized protein OS=Cucumis sativus GN=Csa_1G530660 PE=4 SV=1[more]
V7BQ97_PHAVU2.0e-8492.31Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_006G068000g PE=4 SV=1[more]
A0A0S3S6D8_PHAAN2.6e-8492.95Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.05G181900 PE=... [more]
C6SZU0_SOYBN2.9e-8392.95Uncharacterized protein OS=Glycine max GN=GLYMA_18G063100 PE=2 SV=1[more]
A0A0B2RR59_GLYSO2.9e-8392.95NudC domain-containing protein 2 OS=Glycine soja GN=glysoja_037236 PE=4 SV=1[more]
BLAST of CmaCh13G000680.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G58740.15.2e-8489.74 HSP20-like chaperones superfamily protein[more]
AT5G53400.11.3e-1327.22 HSP20-like chaperones superfamily protein[more]
BLAST of CmaCh13G000680.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115075|ref|XP_008457374.1|4.0e-8696.15PREDICTED: nudC domain-containing protein 2 [Cucumis melo][more]
gi|449467493|ref|XP_004151457.1|2.6e-8594.87PREDICTED: nudC domain-containing protein 2 [Cucumis sativus][more]
gi|593692450|ref|XP_007146767.1|2.9e-8492.31hypothetical protein PHAVU_006G068000g [Phaseolus vulgaris][more]
gi|1021468355|ref|XP_016164617.1|2.9e-8494.23PREDICTED: nudC domain-containing protein 2 [Arachis ipaensis][more]
gi|951040171|ref|XP_014517602.1|3.7e-8492.95PREDICTED: nudC domain-containing protein 2 [Vigna radiata var. radiata][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR007052CS_dom
IPR008978HSP20-like_chaperone
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh13G000680CmaCh13G000680gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh13G000680.1CmaCh13G000680.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G000680.1.CDS.5CmaCh13G000680.1.CDS.5CDS
CmaCh13G000680.1.CDS.4CmaCh13G000680.1.CDS.4CDS
CmaCh13G000680.1.CDS.3CmaCh13G000680.1.CDS.3CDS
CmaCh13G000680.1.CDS.2CmaCh13G000680.1.CDS.2CDS
CmaCh13G000680.1.CDS.1CmaCh13G000680.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G000680.1.five_prime_UTR.1CmaCh13G000680.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh13G000680.1.exon.5CmaCh13G000680.1.exon.5exon
CmaCh13G000680.1.exon.4CmaCh13G000680.1.exon.4exon
CmaCh13G000680.1.exon.3CmaCh13G000680.1.exon.3exon
CmaCh13G000680.1.exon.2CmaCh13G000680.1.exon.2exon
CmaCh13G000680.1.exon.1CmaCh13G000680.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007052CS domainPFAMPF04969CScoord: 21..93
score: 2.1
IPR007052CS domainPROFILEPS51203CScoord: 16..104
score: 15
IPR008978HSP20-like chaperoneGENE3DG3DSA:2.60.40.790coord: 19..148
score: 1.1
IPR008978HSP20-like chaperoneunknownSSF49764HSP20-like chaperonescoord: 9..115
score: 1.2
NoneNo IPR availablePANTHERPTHR12356NUCLEAR MOVEMENT PROTEIN NUDCcoord: 1..157
score: 7.3
NoneNo IPR availablePANTHERPTHR12356:SF18NUDC DOMAIN-CONTAINING PROTEIN 2coord: 1..157
score: 7.3