CmaCh12G012440 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G012440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionTranscription factor
LocationCma_Chr12 : 9753024 .. 9753461 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAGCCGATTCCCCGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACGGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCAGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCTGAACTTGCGAAGCAGATTAACGAGCGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTGA

mRNA sequence

ATGCCGAGCCGATTCCCCGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACGGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCAGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCTGAACTTGCGAAGCAGATTAACGAGCGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTGA

Coding sequence (CDS)

ATGCCGAGCCGATTCCCCGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACGGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCAGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCTGAACTTGCGAAGCAGATTAACGAGCGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTGA

Protein sequence

MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK
Homology
[Close]
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKK--A 60
           MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNKK  +
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  TAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYE 120
           TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKMSQA+LAKQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLAKMEKVLGVKLRGKSGK 146
           NGKAVPNQAVLAKMEKVLGVKLRGK GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 8.6e-35
Identity = 78/137 (56.93%), Postives = 105/137 (76.64%), Query Frame = 1 

Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAP-VNA 66
           G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           +KL++ TE  + DRVPTE++ AI +AR EKK++Q++LA  INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.8e-32
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 1 

Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAP-VNA 66
           G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           + L++ TE    +RVPTE++ AI +AR +KK++Q++LA+ INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.2e-21
Identity = 62/132 (46.97%), Postives = 82/132 (62.12%), Query Frame = 1 

Query: 12  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEE 71
           DW+ V VL K  P A   +  +A+  A R G  V T KK+ AG NK+ T    N  KL+ 
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNKQHTITR-NTAKLDR 64

Query: 72  GTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAK 131
            TE    DRVP EV   IQ+ R  K M+Q +LA +INE+ QV+ +YE GKA+PN  V+ K
Sbjct: 65  ETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGK 124

Query: 132 MEKVLGVKLRGK 143
           +E+V+G+KLRGK
Sbjct: 125 IERVIGLKLRGK 135

[Close]
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.3e-19
Identity = 60/132 (45.45%), Postives = 81/132 (61.36%), Query Frame = 1 

Query: 12  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEE 71
           DW+ V VL K  P A   +  +AV  A R G  V T KK+ AG NK+      N  KL+ 
Sbjct: 5   DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNKQHFITK-NTAKLDR 64

Query: 72  GTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQAVLAK 131
            TE    DRVP EV   IQ+ R  K M+Q +LA +INE+ QV+ +YE+G+A+PN  V+ K
Sbjct: 65  ETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGK 124

Query: 132 MEKVLGVKLRGK 143
           +E+ +G+KLRGK
Sbjct: 125 IERAIGLKLRGK 135

[Close]
BLAST of CmaCh12G012440 vs. TrEMBL
Match: A0A0A0LFV9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004720 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.5e-65
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]
BLAST of CmaCh12G012440 vs. TrEMBL
Match: A0A0D2SNV8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_010G069500 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-59
Identity = 122/145 (84.14%), Postives = 134/145 (92.41%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MP+RF GA++QDWEPVVLHKSKPKAQDLRDPKAVN+A+RSGAPV T+KKFDAGSNKK   
Sbjct: 20  MPTRFGGAVTQDWEPVVLHKSKPKAQDLRDPKAVNRALRSGAPVQTIKKFDAGSNKKTAG 79

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNARKL+EGTEPAALDRVPT+VR  IQKARLEKK+SQAELAK INE+ +VVQEYENGK
Sbjct: 80  PVVNARKLDEGTEPAALDRVPTDVRQTIQKARLEKKLSQAELAKLINEQLKVVQEYENGK 139

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKME+VLGVKLRGKSGK
Sbjct: 140 AVPNQAVLAKMERVLGVKLRGKSGK 164

[Close]
BLAST of CmaCh12G012440 vs. TrEMBL
Match: S4SF23_GOSHI (Multiprotein bridging factor 1 transcriptional coactivator OS=Gossypium hirsutum GN=MBF1c PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 4.5e-59
Identity = 122/145 (84.14%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MP+ F GA++QDWEPVVLHKSKPKAQDLRDPKAVNQA+RSGAPV T+KKFDAGSNKK   
Sbjct: 1   MPTGFGGAVTQDWEPVVLHKSKPKAQDLRDPKAVNQALRSGAPVQTIKKFDAGSNKKTAG 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNARKL+EGTEPAALDRVPT+VR  IQKARLEKK+SQAELAK INE+ +VVQEYENGK
Sbjct: 61  PVVNARKLDEGTEPAALDRVPTDVRQTIQKARLEKKLSQAELAKLINEQLKVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKME+VLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMERVLGVKLRGKSGK 145

[Close]
BLAST of CmaCh12G012440 vs. TrEMBL
Match: A0A0S3TCP5_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G243400 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 5.9e-59
Identity = 124/145 (85.52%), Postives = 133/145 (91.72%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSR  G I+QDW+P+VLHK+KPKAQDLR+PKAVNQA+RSGA VLTVKKFDAGSN+KA  
Sbjct: 1   MPSRSTGVITQDWDPIVLHKAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGG 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VN RKLEEGTEPAAL+RV  EVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  PAVNPRKLEEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKME+VLGVKLRGK GK
Sbjct: 121 AVPNQAVLAKMERVLGVKLRGKIGK 145

[Close]
BLAST of CmaCh12G012440 vs. TrEMBL
Match: V7C691_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162100g PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 7.8e-59
Identity = 123/145 (84.83%), Postives = 135/145 (93.10%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MP+R  GAI+QDW+P+VLH++KPKAQDLR+PKAVNQA+RSGA VLTVKKFDAGSN+KA  
Sbjct: 1   MPTRSTGAITQDWDPIVLHRAKPKAQDLRNPKAVNQALRSGAEVLTVKKFDAGSNRKAGG 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNARKLEEGTEPAAL+RV  EVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  PAVNARKLEEGTEPAALERVAGEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAK+E+VLGVKLRGK GK
Sbjct: 121 AVPNQAVLAKIERVLGVKLRGKIGK 145

[Close]
BLAST of CmaCh12G012440 vs. TAIR10
Match: AT3G24500.1 (AT3G24500.1 multiprotein bridging factor 1C)

HSP 1 Score: 223.8 bits (569), Expect = 6.9e-59
Identity = 122/148 (82.43%), Postives = 132/148 (89.19%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKK--A 60
           MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNKK  +
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  TAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYE 120
           TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKMSQA+LAKQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLAKMEKVLGVKLRGKSGK 146
           NGKAVPNQAVLAKMEKVLGVKLRGK GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]
BLAST of CmaCh12G012440 vs. TAIR10
Match: AT3G58680.1 (AT3G58680.1 multiprotein bridging factor 1B)

HSP 1 Score: 147.9 bits (372), Expect = 4.8e-36
Identity = 78/137 (56.93%), Postives = 105/137 (76.64%), Query Frame = 1 

Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAP-VNA 66
           G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           +KL++ TE  + DRVPTE++ AI +AR EKK++Q++LA  INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]
BLAST of CmaCh12G012440 vs. TAIR10
Match: AT2G42680.1 (AT2G42680.1 multiprotein bridging factor 1A)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-33
Identity = 73/137 (53.28%), Postives = 103/137 (75.18%), Query Frame = 1 

Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAP-VNA 66
           G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGKAVPNQ 126
           + L++ TE    +RVPTE++ AI +AR +KK++Q++LA+ INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]
BLAST of CmaCh12G012440 vs. NCBI nr
Match: gi|449443143|ref|XP_004139340.1| (PREDICTED: multiprotein-bridging factor 1c [Cucumis sativus])

HSP 1 Score: 255.0 bits (650), Expect = 8.0e-65
Identity = 135/145 (93.10%), Postives = 138/145 (95.17%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]
BLAST of CmaCh12G012440 vs. NCBI nr
Match: gi|659071135|ref|XP_008458302.1| (PREDICTED: multiprotein-bridging factor 1c [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 2.6e-63
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  A
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQAELAKQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

[Close]
BLAST of CmaCh12G012440 vs. NCBI nr
Match: gi|1009160474|ref|XP_015898370.1| (PREDICTED: multiprotein-bridging factor 1c [Ziziphus jujuba])

HSP 1 Score: 236.9 bits (603), Expect = 2.2e-59
Identity = 123/142 (86.62%), Postives = 134/142 (94.37%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSR+PGAI+QDWEPVVLHKSKPKAQDLRDPKAVN+A+RSGAP+ T+KKFDA SNKK + 
Sbjct: 1   MPSRYPGAITQDWEPVVLHKSKPKAQDLRDPKAVNKALRSGAPIQTIKKFDAASNKKISP 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNA+KL+EGTEPAALDRVP EVRHAIQKARL+KKMSQAELAKQINER QVVQEYENGK
Sbjct: 61  I-VNAKKLDEGTEPAALDRVPAEVRHAIQKARLDKKMSQAELAKQINERPQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGK 143
           AVPNQAVLAKME+VLGVKLRGK
Sbjct: 121 AVPNQAVLAKMERVLGVKLRGK 141

[Close]
BLAST of CmaCh12G012440 vs. NCBI nr
Match: gi|823237796|ref|XP_012451544.1| (PREDICTED: multiprotein-bridging factor 1c [Gossypium raimondii])

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 122/145 (84.14%), Postives = 134/145 (92.41%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MP+RF GA++QDWEPVVLHKSKPKAQDLRDPKAVN+A+RSGAPV T+KKFDAGSNKK   
Sbjct: 1   MPTRFGGAVTQDWEPVVLHKSKPKAQDLRDPKAVNRALRSGAPVQTIKKFDAGSNKKTAG 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNARKL+EGTEPAALDRVPT+VR  IQKARLEKK+SQAELAK INE+ +VVQEYENGK
Sbjct: 61  PVVNARKLDEGTEPAALDRVPTDVRQTIQKARLEKKLSQAELAKLINEQLKVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKME+VLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMERVLGVKLRGKSGK 145

[Close]
BLAST of CmaCh12G012440 vs. NCBI nr
Match: gi|763797923|gb|KJB64878.1| (hypothetical protein B456_010G069500 [Gossypium raimondii])

HSP 1 Score: 236.5 bits (602), Expect = 2.9e-59
Identity = 122/145 (84.14%), Postives = 134/145 (92.41%), Query Frame = 1 

Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MP+RF GA++QDWEPVVLHKSKPKAQDLRDPKAVN+A+RSGAPV T+KKFDAGSNKK   
Sbjct: 20  MPTRFGGAVTQDWEPVVLHKSKPKAQDLRDPKAVNRALRSGAPVQTIKKFDAGSNKKTAG 79

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120
             VNARKL+EGTEPAALDRVPT+VR  IQKARLEKK+SQAELAK INE+ +VVQEYENGK
Sbjct: 80  PVVNARKLDEGTEPAALDRVPTDVRQTIQKARLEKKLSQAELAKLINEQLKVVQEYENGK 139

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKME+VLGVKLRGKSGK
Sbjct: 140 AVPNQAVLAKMERVLGVKLRGKSGK 164

The following BLAST results are available for this feature:
BLAST of CmaCh12G012440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MBF1C_ARATH1.2e-5782.43Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1[more]
MBF1B_ARATH8.6e-3556.93Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1[more]
MBF1A_ARATH1.8e-3253.28Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1[more]
EDF1_XENLA9.2e-2146.97Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 P... [more]
EDF1_CHICK1.3e-1945.45Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE... [more]
BLAST of CmaCh12G012440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LFV9_CUCSA5.5e-6593.10Uncharacterized protein OS=Cucumis sativus GN=Csa_2G004720 PE=4 SV=1[more]
A0A0D2SNV8_GOSRA2.0e-5984.14Uncharacterized protein OS=Gossypium raimondii GN=B456_010G069500 PE=4 SV=1[more]
S4SF23_GOSHI4.5e-5984.14Multiprotein bridging factor 1 transcriptional coactivator OS=Gossypium hirsutum... [more]
A0A0S3TCP5_PHAAN5.9e-5985.52Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G243400 PE=... [more]
V7C691_PHAVU7.8e-5984.83Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G162100g PE=4 SV=1[more]
BLAST of CmaCh12G012440 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G24500.16.9e-5982.43 multiprotein bridging factor 1C[more]
AT3G58680.14.8e-3656.93 multiprotein bridging factor 1B[more]
AT2G42680.11.0e-3353.28 multiprotein bridging factor 1A[more]
BLAST of CmaCh12G012440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443143|ref|XP_004139340.1|8.0e-6593.10PREDICTED: multiprotein-bridging factor 1c [Cucumis sativus][more]
gi|659071135|ref|XP_008458302.1|2.6e-6391.03PREDICTED: multiprotein-bridging factor 1c [Cucumis melo][more]
gi|1009160474|ref|XP_015898370.1|2.2e-5986.62PREDICTED: multiprotein-bridging factor 1c [Ziziphus jujuba][more]
gi|823237796|ref|XP_012451544.1|2.9e-5984.14PREDICTED: multiprotein-bridging factor 1c [Gossypium raimondii][more]
gi|763797923|gb|KJB64878.1|2.9e-5984.14hypothetical protein B456_010G069500 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf
IPR013729MBF1_N
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009873 ethylene-activated signaling pathway
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006457 protein folding
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0009644 response to high light intensity
biological_process GO:0042542 response to hydrogen peroxide
biological_process GO:0008150 biological_process
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003713 transcription coactivator activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G012440.1CmaCh12G012440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainPFAMPF01381HTH_3coord: 88..139
score: 7.9
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 87..142
score: 3.4
IPR001387Cro/C1-type helix-turn-helix domainPROFILEPS50943HTH_CROC1coord: 88..142
score: 13
IPR010982Lambda repressor-like, DNA-binding domainGENE3DG3DSA:1.10.260.40coord: 86..139
score: 1.3
IPR010982Lambda repressor-like, DNA-binding domainunknownSSF47413lambda repressor-like DNA-binding domainscoord: 82..139
score: 2.82
IPR013729Multiprotein bridging factor 1, N-terminalPFAMPF08523MBF1coord: 11..80
score: 1.0
NoneNo IPR availableunknownCoilCoilcoord: 88..110
scor
NoneNo IPR availablePANTHERPTHR10245ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1coord: 54..142
score: 1.0
NoneNo IPR availablePANTHERPTHR10245:SF33SUBFAMILY NOT NAMEDcoord: 54..142
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G012440Cucsa.116320Cucumber (Gy14) v1cgycmaB0285
CmaCh12G012440Cla016761Watermelon (97103) v1cmawmB172
CmaCh12G012440Csa2G004720Cucumber (Chinese Long) v2cmacuB173
CmaCh12G012440MELO3C004553Melon (DHL92) v3.5.1cmameB172
CmaCh12G012440ClCG11G002510Watermelon (Charleston Gray)cmawcgB147
CmaCh12G012440CSPI02G01220Wild cucumber (PI 183967)cmacpiB174
CmaCh12G012440CmoCh12G012750Cucurbita moschata (Rifu)cmacmoB177
CmaCh12G012440Lsi11G002660Bottle gourd (USVL1VR-Ls)cmalsiB159
CmaCh12G012440Cp4.1LG07g09940Cucurbita pepo (Zucchini)cmacpeB204
CmaCh12G012440MELO3C004553.2Melon (DHL92) v3.6.1cmamedB187
CmaCh12G012440CsaV3_2G002310Cucumber (Chinese Long) v3cmacucB0202
CmaCh12G012440Cla97C11G208930Watermelon (97103) v2cmawmbB171
CmaCh12G012440Bhi06G001730Wax gourdcmawgoB0186
CmaCh12G012440CsGy2G001220Cucumber (Gy14) v2cgybcmaB178
CmaCh12G012440Carg25993Silver-seed gourdcarcmaB0387
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G012440Silver-seed gourdcarcmaB0048
CmaCh12G012440Silver-seed gourdcarcmaB0170
CmaCh12G012440Silver-seed gourdcarcmaB0797
CmaCh12G012440Watermelon (97103) v2cmawmbB192
CmaCh12G012440Cucurbita maxima (Rimu)cmacmaB086
CmaCh12G012440Cucurbita maxima (Rimu)cmacmaB122
CmaCh12G012440Cucurbita maxima (Rimu)cmacmaB190
CmaCh12G012440Cucurbita moschata (Rifu)cmacmoB169
CmaCh12G012440Cucurbita moschata (Rifu)cmacmoB171
CmaCh12G012440Cucurbita moschata (Rifu)cmacmoB186
CmaCh12G012440Cucurbita moschata (Rifu)cmacmoB190
CmaCh12G012440Cucurbita pepo (Zucchini)cmacpeB171
CmaCh12G012440Cucurbita pepo (Zucchini)cmacpeB184
CmaCh12G012440Cucurbita pepo (Zucchini)cmacpeB196
CmaCh12G012440Bottle gourd (USVL1VR-Ls)cmalsiB182