CmaCh12G008380 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G008380
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Nucleoporin Nup43
Location	Cma_Chr12 : 6207463 .. 6210171 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCGTCACTCTGATTCCCAGTCTTCCTGGAAAGTGAGACAACAGAGCTTGCTTAAACCCTAACAATGGCGATCGTGAGTCCCCAGCAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATATTGACGGCGTTCGATGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGCCGTCGTGGCCCTTTTCGACTCCGATTCCGACTCATCCTCCATTGAAATTCACTCCCTTACTCAAAATCCGCTGGATATGGCTCCTCAGTCGGCTTGGACGTCACCTTCAAGAATCTCTTCCCTTAAAACCTCTCAATTCTACCAAAACCCTCTCGTTTTCGCTTCTACTTATACAGGTTCTCTTCATGTTCTATCTGTCGAGCCAATGGATGCGTCGCTCGATTCGGAGCTCTCGGTGCCTGAGAAGATATTGCACGATAGACCTATTTCTTGTGTCGATGTGATGGATAGTGGAGGTGAATGTCTGACCGTTGCGGAAGATGGACGGGTGAATTTGGTTAGCGTTGGGGAATCTGGGTTGAATTATCGTCGGATATTCGATAGTAATGGATTGGTGTCGTATACTGCAGCGAAATGGGCATCCCCCACTGAGTTTGCGACAGGAGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCAGTTTGTCAGTTTAAGGGCGACTGGTATGTGAATTTGCGTAATTTTCCTGGCATCCTTTCATATATAGTTGAACGTTTAGCATCTAGGACTGGAACAGAATTGTAGGAAACACCCTGTTTTCTGAAACAAGAAGTGGCTTCTGAGACTGCCTTACTACACTACAGATGAACGTATGTAGTGTAGGTTGATGAAAGAATATCGATTCCTAAAAATGTTCTCTGGTTTGACTATAAAAATTAGGAAATTAAATTTTGATATTGTGAAATCTTAAAAAGTGTAAGGCGCTGTAGTTGATTAATAGATGTGTTGAATTCATTCTTTGCAGGGCTTCTGGTATTGTTCACTGCATGGACATCCATCCATCCCGAAAACACACTTGTTTGGTAAGCTCTGTTGTCTTAGCTTCTTATCCTTGCATCACACCCAAGTAGTCATAATCACGTGTGTTCGTATAAACTCTGCAGAAGATCAGGACTCCGAACTTGTGTTTCCTTTCCGAACTTCATTTTTTATTTTTTTTGTCCTAAAACTCTTTGAGAGATATCATGATTGGGTCGCCTAGGCCAGATCTAGGGTCTAATCATGAGGGTAGTATTTTATTATGGTGGAGTTTTCTTGCTCTCACTACCGTTCGCCTCGGAGACATGGTCGAGAAGTACCATGCATGGTTGCTTCTAACTCCCTTGAGCTGTTTGACGACCTGAGTTTCTGTACTTTCTACCATTCAGTTTGGTTTATAGTGCTAAACACGCTTCTTAAGTCTTCTTGGCCCAACTCTTTTAGTAGATTACTTGGGCAGAGCTATTGAGCTAATTAATTTAAAGAAATATATAGTTGTTATTTGTTATCTCTTGTGTAAGTTCAAATCGACAGTGAAATTGATTATCCTGCCTTATTTATGAGCTTTCAGTATAAGTGTGCTTATCGTTCCCCATGTTAGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCGCTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGTAGAAACTGGTGCTGACCATGTTTGATTGGTCGGGGTGAACCATCGTTCATCCAAAGTCTTTTTGTTGCTACATATCTAATATATAAGTAGTTTCCTTTTTCATTCTGTTATCTAATGCCTGTTGGCTATTGTCTTATTTTCTGTTCCACATCCATAAAGTGGCTCAACTTTTCTATTTATGTGACTTGTAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGTGCAATTAATGGTTTTGACATCGACCATCAACACCCATCGGTAAGTTGCCCATATAAACTATTATATGAAAACTTATGTTGTATACTTTATTCACTGTGTTGTCCCTATCTCTAAAAATAAGCGTCTCTCTAAGAGCTTTGAAAATAAATGGTGAGAGGGTTTAAGTGGTGGTGCTCGCTATGTTTAAGGCTTTCTAAATATGCTATGCAGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTCCGATGCACGATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTGGGTTACACCACATAATTGGAACTGAATTTTGATATGGATTATCATACTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTCTTTTTAATGTATTTCTTCTGTTTTTCATTCTACTTCTCAACATGACGTTTTTACCTTTTAATTTTTGTACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGC

mRNA sequence

CGTCGTCACTCTGATTCCCAGTCTTCCTGGAAAGTGAGACAACAGAGCTTGCTTAAACCCTAACAATGGCGATCGTGAGTCCCCAGCAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATATTGACGGCGTTCGATGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGCCGTCGTGGCCCTTTTCGACTCCGATTCCGACTCATCCTCCATTGAAATTCACTCCCTTACTCAAAATCCGCTGGATATGGCTCCTCAGTCGGCTTGGACGTCACCTTCAAGAATCTCTTCCCTTAAAACCTCTCAATTCTACCAAAACCCTCTCGTTTTCGCTTCTACTTATACAGGTTCTCTTCATGTTCTATCTGTCGAGCCAATGGATGCGTCGCTCGATTCGGAGCTCTCGGTGCCTGAGAAGATATTGCACGATAGACCTATTTCTTGTGTCGATGTGATGGATAGTGGAGGTGAATGTCTGACCGTTGCGGAAGATGGACGGGTGAATTTGGTTAGCGTTGGGGAATCTGGGTTGAATTATCGTCGGATATTCGATAGTAATGGATTGGTGTCGTATACTGCAGCGAAATGGGCATCCCCCACTGAGTTTGCGACAGGAGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCAGTTTGTCAGTTTAAGGGCGACTGGGCTTCTGGTATTGTTCACTGCATGGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCGCTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGTGCAATTAATGGTTTTGACATCGACCATCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTCCGATGCACGATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTGGGTTACACCACATAATTGGAACTGAATTTTGATATGGATTATCATACTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTCTTTTTAATGTATTTCTTCTGTTTTTCATTCTACTTCTCAACATGACGTTTTTACCTTTTAATTTTTGTACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGC

Coding sequence (CDS)

ATGGCGATCGTGAGTCCCCAGCAGCAACCTCAAATCCACAGGTTCCCGCAATTCAAGTATATTGACGGCGTTCGATGGCTTCCACCGCTCTCCGCATTCGGCCGGTTTGCCGTCGTGGCCCTTTTCGACTCCGATTCCGACTCATCCTCCATTGAAATTCACTCCCTTACTCAAAATCCGCTGGATATGGCTCCTCAGTCGGCTTGGACGTCACCTTCAAGAATCTCTTCCCTTAAAACCTCTCAATTCTACCAAAACCCTCTCGTTTTCGCTTCTACTTATACAGGTTCTCTTCATGTTCTATCTGTCGAGCCAATGGATGCGTCGCTCGATTCGGAGCTCTCGGTGCCTGAGAAGATATTGCACGATAGACCTATTTCTTGTGTCGATGTGATGGATAGTGGAGGTGAATGTCTGACCGTTGCGGAAGATGGACGGGTGAATTTGGTTAGCGTTGGGGAATCTGGGTTGAATTATCGTCGGATATTCGATAGTAATGGATTGGTGTCGTATACTGCAGCGAAATGGGCATCCCCCACTGAGTTTGCGACAGGAGGTTGTGGGTTTAGCTTGCAATGGTGGGATCAGAGGAAGCCCGGTGGAGCAGTTTGTCAGTTTAAGGGCGACTGGGCTTCTGGTATTGTTCACTGCATGGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCGCTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGTGCAATTAATGGTTTTGACATCGACCATCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGA

Protein sequence

MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKILHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVCQFKGDWASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP

Homology

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BLAST of CmaCh12G008380 vs. Swiss-Prot
Match: NUP43_ARATH (Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana GN=NUP43 PE=1 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-109
Identity = 207/364 (56.87%), Postives = 250/364 (68.68%), Query Frame = 1


Query: 7   QQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD---- 66
           Q   Q+HR PQ KY+DGVRWLP  SA  RF   A +D+D DSSSIEI SL  NP      
Sbjct: 5   QDSFQVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNT 64

Query: 67  ---MAPQSAWTSPSRISSLKTS-------QFYQNPLVFASTYTGSLHVLSVEPMDASLDS 126
              +   S+WTSPSR+SSL+ +        F   P+V A+T +GSLHVL ++ ++ +   
Sbjct: 65  NPLIESLSSWTSPSRVSSLEVAGNGGGGGSF--KPMVSAATSSGSLHVLMIDLVEGAAIE 124

Query: 127 ELSVPE-KILHDRPISCVDVMDSGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVS 186
           E    E +  H   +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+
Sbjct: 125 EFYAAEGERFHVGRVEGVDWRE-GGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVA 184

Query: 187 YTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVCQFKGDWASG----IVHCMDIHPSRKH 246
           Y A KWASPTEF TGG GF LQ WDQRK G AV Q KG+W  G    IVH +DIHPSRKH
Sbjct: 185 YRAVKWASPTEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRKH 244

Query: 247 TCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGM 306
           TC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV+YD Y KS     +
Sbjct: 245 TCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKS----NV 304

Query: 307 SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAI 351
           SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDID Q+P +VIC+LEWES+A+
Sbjct: 305 SSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAV 361

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BLAST of CmaCh12G008380 vs. TrEMBL
Match: A0A0A0LJ46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036670 PE=4 SV=1)

HSP 1 Score: 666.0 bits (1717), Expect = 2.5e-188
Identity = 314/350 (89.71%), Postives = 332/350 (94.86%), Query Frame = 1


Query: 1   MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
           MAI SPQQQPQIHRFPQFKY+DGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNP
Sbjct: 1   MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNP 60

Query: 61  LDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKI 120
           LD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHVLSVEPM+ASLDSELSVPEK+
Sbjct: 61  LDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120

Query: 121 LHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
           LHD PISCVDVMD GGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPT
Sbjct: 121 LHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPT 180

Query: 181 EFATGGCGFSLQWWDQRKPGGAVCQFKGDWASGIVHCMDIHPSRKHTCLAGGSFGTVFAW 240
           EF TGGCGFSLQWWDQRKPGGAV QFK +WASGIVHC+DIHPSRKHTCLAGGSFGTVFAW
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAW 240

Query: 241 DLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSED 300
           DLR QQQPIILSGLEGSKTSN SPCESEVWEV YDPYIKSGN+GGMSS+QILPAMICSED
Sbjct: 241 DLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED 300

Query: 301 GIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP 351
           GI+TSIEQGK+PVELLAEPCAINGFDI+ QHPSEVICNLEWESVAILSRP
Sbjct: 301 GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP 350

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BLAST of CmaCh12G008380 vs. TrEMBL
Match: M5XD93_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007862mg PE=4 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 5.7e-140
Identity = 243/354 (68.64%), Postives = 288/354 (81.36%), Query Frame = 1


Query: 1   MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
           MAI +  + PQIHR  Q KYID VRWLPPLSA  R AV+A+FDSDSDS++IE HS   +P
Sbjct: 1   MAITALSEPPQIHRLRQSKYIDAVRWLPPLSALDRLAVIAVFDSDSDSAAIETHSFAPDP 60

Query: 61  LDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMD-ASLDSELSVPEK 120
            ++  QS W SPSRISSLKTSQ +  P V A+T  GS+H+L  + MD ASL+SEL +PEK
Sbjct: 61  ENLTQQSQWFSPSRISSLKTSQSHHKPFVAAATLAGSIHILFGDSMDPASLESELLMPEK 120

Query: 121 ILHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASP 180
            LH+ PISCVD+MD G EC++V EDGRVNLVSVGES L+Y+RIFDS+GLVS+T AKWASP
Sbjct: 121 ALHEGPISCVDIMDGGVECVSVGEDGRVNLVSVGESELSYQRIFDSSGLVSFTTAKWASP 180

Query: 181 TEFATGGCGFSLQWWDQRKPGGAVCQFKGDWAS----GIVHCMDIHPSRKHTCLAGGSFG 240
           +EFATGG GFSLQWWDQRKPG AV QFKG W+     GIVH +DIHPSRKHTCLAGGS G
Sbjct: 181 SEFATGGYGFSLQWWDQRKPGAAVSQFKGSWSQRTTPGIVHSIDIHPSRKHTCLAGGSLG 240

Query: 241 TVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAM 300
           TVFAWDLRW QQPI+LSG+   +T++ SPCESEVWEV +D Y KS N+G + SS+ILP M
Sbjct: 241 TVFAWDLRWPQQPILLSGVGAGETTH-SPCESEVWEVHFDHYAKSSNVGNV-SSRILPTM 300

Query: 301 ICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSR 350
           ICSEDGI+  +EQG++PVELLAEPCAIN FDID Q+PS+VIC+LEWES+AIL+R
Sbjct: 301 ICSEDGILAVVEQGEEPVELLAEPCAINSFDIDRQYPSDVICSLEWESIAILTR 352

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BLAST of CmaCh12G008380 vs. TrEMBL
Match: I1JGT1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_02G206900 PE=4 SV=1)

HSP 1 Score: 486.9 bits (1252), Expect = 2.1e-134
Identity = 234/342 (68.42%), Postives = 273/342 (79.82%), Query Frame = 1


Query: 12  IHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSAWTS 71
           I RFPQ +Y+D VRWLP  SAF RFAV+ALFD DSD+SSIEIH+L QNP  + P S+W+S
Sbjct: 8   IQRFPQHRYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHALNQNPFSLEPHSSWSS 67

Query: 72  PSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKILHDRPISCVDV 131
           PSR+SSLK S F Q PL+ AST +GSLH L  +  DASL SE+S+PE  LH  P SCVD+
Sbjct: 68  PSRVSSLKPSHFLQKPLIVASTSSGSLHFLFSDSSDASLLSEVSLPEGALHSLPASCVDL 127

Query: 132 MDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSL 191
           MD G EC++V EDG+VNLV +G+S LNYRR+FDS GLVSYTA +WASP EFATGG GF L
Sbjct: 128 MDGGVECVSVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVRWASPMEFATGGFGFGL 187

Query: 192 QWWDQRKPGGAVCQFKGDW----ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQ 251
           QWWDQRKPGG V QFKG+W     SGIVH +DIHPSRKHTCLAGGS GTVFAWDLRWQQQ
Sbjct: 188 QWWDQRKPGGPVSQFKGNWDKKLTSGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQ 247

Query: 252 PIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIE 311
           PIILSG   + T+  S  ESEVWEV+YD  IKS      SS++ILP+MICSEDGI+  IE
Sbjct: 248 PIILSGAGAANTAVQSISESEVWEVQYDRCIKSNT----SSTRILPSMICSEDGILGVIE 307

Query: 312 QGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSR 350
           QG++P+ELLAEPCAIN FDID  +PS+VIC+LEWE+VAIL+R
Sbjct: 308 QGEEPIELLAEPCAINSFDIDRHNPSDVICSLEWEAVAILTR 345

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BLAST of CmaCh12G008380 vs. TrEMBL
Match: A0A151S9K3_CAJCA (Nucleoporin Nup43 OS=Cajanus cajan GN=KK1_026732 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 1.8e-133
Identity = 237/341 (69.50%), Postives = 268/341 (78.59%), Query Frame = 1


Query: 13  HRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSAWTSP 72
           HRFPQFKY+D VRWLP  S F RFAV+ALFDSD+DSSSI+IHS   NPL    Q +W SP
Sbjct: 7   HRFPQFKYVDAVRWLPLQSPFHRFAVLALFDSDTDSSSIQIHSFNPNPLSFDSQFSWPSP 66

Query: 73  SRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKILHDRPISCVDVM 132
           SRISSL+TS F Q PL+ AST +GSLH L  +P  A L SE S+P+  LH  P S VD+M
Sbjct: 67  SRISSLRTSHFLQKPLIVASTSSGSLHFLFADPSHAELLSEASLPDAALHSLPASSVDLM 126

Query: 133 DSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSLQ 192
           D+  EC+TV EDGRVNLV+VGES L+YRRIFDS GLVSYTA +WASP EFATGG GFSLQ
Sbjct: 127 DAAVECVTVGEDGRVNLVNVGESNLSYRRIFDSGGLVSYTAVRWASPMEFATGGYGFSLQ 186

Query: 193 WWDQRKPGGAVCQFKGDW----ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQP 252
           WWDQRKPGG V QFKGDW     SGIVH +DIHPSRKHTCLAGGS GTVFAWDLRWQQQP
Sbjct: 187 WWDQRKPGGPVSQFKGDWDKKLTSGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQP 246

Query: 253 IILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQ 312
           IILSG      +  S  ESEVWEV+YD  IKS      SS++ILP+MICSEDGI+  IEQ
Sbjct: 247 IILSGAGAGNAAVQSISESEVWEVQYDCCIKSNT----SSTRILPSMICSEDGILGVIEQ 306

Query: 313 GKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSR 350
           G++PVELLAEPCAIN FDID  +PS+VIC+LEWE+VAIL+R
Sbjct: 307 GEEPVELLAEPCAINSFDIDRHNPSDVICSLEWEAVAILTR 343

[Close]

BLAST of CmaCh12G008380 vs. TrEMBL
Match: I1MSZ4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_17G071100 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 3.3e-132
Identity = 233/345 (67.54%), Postives = 270/345 (78.26%), Query Frame = 1


Query: 12  IHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQSAWTS 71
           I RFPQ KY+D VRWLP  SAF RFAV+ALFD DSD+SSIEIHSL  NPL + P S+W+S
Sbjct: 6   IQRFPQHKYVDAVRWLPLQSAFDRFAVLALFDFDSDASSIEIHSLNPNPLSLEPHSSWSS 65

Query: 72  PSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKILHDRPISCVDV 131
           PSR+SSLK S F Q PL+ AST +GSLH L  +   A+L+SE+S+PE  LH  P SCVD+
Sbjct: 66  PSRVSSLKASHFLQKPLIVASTSSGSLHFLFSDSSVATLESEVSIPEGALHSVPASCVDL 125

Query: 132 MDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGGCGFSL 191
           +D G EC+TV EDG+VNLV +G+S LNYRR+FDS GLVSYTA  WASP EFATGG GF L
Sbjct: 126 LDGGVECVTVGEDGKVNLVGIGDSNLNYRRLFDSAGLVSYTAVSWASPMEFATGGYGFGL 185

Query: 192 QWWDQRKPGGAVCQFKGDW----ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQ 251
            WWDQRKPGG V QFKG+W     SGIVH +DIHPSRKHTCLAGGS GTVFAWDLRWQQQ
Sbjct: 186 HWWDQRKPGGPVSQFKGNWDKKLTSGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQ 245

Query: 252 PIILSGL---EGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGIIT 311
           PIILSG     G  T+  S  ESEVWEV+YD  IK       SS++ILP+MICSEDGI+ 
Sbjct: 246 PIILSGAGAGAGGNTAVQSISESEVWEVQYDRCIKPNT----SSTRILPSMICSEDGILG 305

Query: 312 SIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSR 350
            IEQG++P+ELLAEPCAIN FDID  +PS+VIC+LEWE+VAIL+R
Sbjct: 306 VIEQGEEPIELLAEPCAINSFDIDRHNPSDVICSLEWEAVAILTR 346

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BLAST of CmaCh12G008380 vs. TAIR10
Match: AT4G30840.1 (AT4G30840.1 Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 397.9 bits (1021), Expect = 6.5e-111
Identity = 207/364 (56.87%), Postives = 250/364 (68.68%), Query Frame = 1


Query: 7   QQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLD---- 66
           Q   Q+HR PQ KY+DGVRWLP  SA  RF   A +D+D DSSSIEI SL  NP      
Sbjct: 5   QDSFQVHRIPQSKYVDGVRWLPQASALNRFFATASYDADCDSSSIEIQSLDPNPRGNHNT 64

Query: 67  ---MAPQSAWTSPSRISSLKTS-------QFYQNPLVFASTYTGSLHVLSVEPMDASLDS 126
              +   S+WTSPSR+SSL+ +        F   P+V A+T +GSLHVL ++ ++ +   
Sbjct: 65  NPLIESLSSWTSPSRVSSLEVAGNGGGGGSF--KPMVSAATSSGSLHVLMIDLVEGAAIE 124

Query: 127 ELSVPE-KILHDRPISCVDVMDSGGECLTVAEDGRVNLVS-VGESGLNYRRIFDSNGLVS 186
           E    E +  H   +  VD  + GGEC+TV EDGRVN+V  V   GL YR++FD NGLV+
Sbjct: 125 EFYAAEGERFHVGRVEGVDWRE-GGECVTVGEDGRVNVVKIVNGEGLRYRKVFDGNGLVA 184

Query: 187 YTAAKWASPTEFATGGCGFSLQWWDQRKPGGAVCQFKGDWASG----IVHCMDIHPSRKH 246
           Y A KWASPTEF TGG GF LQ WDQRK G AV Q KG+W  G    IVH +DIHPSRKH
Sbjct: 185 YRAVKWASPTEFVTGGYGFGLQLWDQRKSGEAVSQLKGNWFQGKTSAIVHSIDIHPSRKH 244

Query: 247 TCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGM 306
           TC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWEV+YD Y KS     +
Sbjct: 245 TCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKS----NV 304

Query: 307 SSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAI 351
           SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDID Q+P +VIC+LEWES+A+
Sbjct: 305 SSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAV 361

[Close]

BLAST of CmaCh12G008380 vs. NCBI nr
Match: gi|659069929|ref|XP_008452472.1| (PREDICTED: nucleoporin Nup43 [Cucumis melo])

HSP 1 Score: 672.2 bits (1733), Expect = 5.0e-190
Identity = 318/349 (91.12%), Postives = 333/349 (95.42%), Query Frame = 1


Query: 1   MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
           MAI+SPQQQPQIHRFPQFKY+DGVRWLPPLSAF RFAV+ALFDSD DSSSIEIHSLTQNP
Sbjct: 1   MAILSPQQQPQIHRFPQFKYVDGVRWLPPLSAFTRFAVIALFDSDFDSSSIEIHSLTQNP 60

Query: 61  LDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKI 120
           LD+AP S W SPSR+SSLKTSQ +QNPLVFASTYTGSLHVLSVEPM+ASLDSELSVPEK+
Sbjct: 61  LDIAPHSTWVSPSRVSSLKTSQLHQNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120

Query: 121 LHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
           LHD PISCVDVMDSGGECLTV+EDGRVNLVSVGESGLNYRRIFDSNGLVSY A KWASPT
Sbjct: 121 LHDGPISCVDVMDSGGECLTVSEDGRVNLVSVGESGLNYRRIFDSNGLVSYNAVKWASPT 180

Query: 181 EFATGGCGFSLQWWDQRKPGGAVCQFKGDWASGIVHCMDIHPSRKHTCLAGGSFGTVFAW 240
           EF TGGCGFSLQWWDQRKPGGAV QFK DWASGIVHC+DIHPSRKHTCLAGGSFGTVFAW
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKADWASGIVHCIDIHPSRKHTCLAGGSFGTVFAW 240

Query: 241 DLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSED 300
           DLR QQQPIILSGLEG+KTSN SPCESEVWEV YDPYIKSGN+GGMSS+QILPAMICSED
Sbjct: 241 DLRSQQQPIILSGLEGTKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED 300

Query: 301 GIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSR 350
           GI+TSIEQGK+PVELLAEPCAINGFDID QHPSEVICNLEWESVAILSR
Sbjct: 301 GILTSIEQGKEPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSR 349

[Close]

BLAST of CmaCh12G008380 vs. NCBI nr
Match: gi|449453944|ref|XP_004144716.1| (PREDICTED: nuclear pore complex protein NUP43 [Cucumis sativus])

HSP 1 Score: 666.0 bits (1717), Expect = 3.6e-188
Identity = 314/350 (89.71%), Postives = 332/350 (94.86%), Query Frame = 1


Query: 1   MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNP 60
           MAI SPQQQPQIHRFPQFKY+DGVRWLPPLSAF RFAV+ALFDSDSDSSSIEIHSLTQNP
Sbjct: 1   MAIASPQQQPQIHRFPQFKYVDGVRWLPPLSAFSRFAVIALFDSDSDSSSIEIHSLTQNP 60

Query: 61  LDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMDASLDSELSVPEKI 120
           LD+ P S W SPSR+SSLKTSQ ++NPLVFASTYTGSLHVLSVEPM+ASLDSELSVPEK+
Sbjct: 61  LDIVPHSTWISPSRVSSLKTSQLHRNPLVFASTYTGSLHVLSVEPMEASLDSELSVPEKM 120

Query: 121 LHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPT 180
           LHD PISCVDVMD GGECLTV+EDGRV+LVSVGESGL+YRRIFDSNGLVSY A KWASPT
Sbjct: 121 LHDGPISCVDVMDGGGECLTVSEDGRVSLVSVGESGLSYRRIFDSNGLVSYNAVKWASPT 180

Query: 181 EFATGGCGFSLQWWDQRKPGGAVCQFKGDWASGIVHCMDIHPSRKHTCLAGGSFGTVFAW 240
           EF TGGCGFSLQWWDQRKPGGAV QFK +WASGIVHC+DIHPSRKHTCLAGGSFGTVFAW
Sbjct: 181 EFVTGGCGFSLQWWDQRKPGGAVSQFKANWASGIVHCIDIHPSRKHTCLAGGSFGTVFAW 240

Query: 241 DLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSED 300
           DLR QQQPIILSGLEGSKTSN SPCESEVWEV YDPYIKSGN+GGMSS+QILPAMICSED
Sbjct: 241 DLRSQQQPIILSGLEGSKTSNPSPCESEVWEVHYDPYIKSGNLGGMSSTQILPAMICSED 300

Query: 301 GIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP 351
           GI+TSIEQGK+PVELLAEPCAINGFDI+ QHPSEVICNLEWESVAILSRP
Sbjct: 301 GILTSIEQGKEPVELLAEPCAINGFDINRQHPSEVICNLEWESVAILSRP 350

[Close]

BLAST of CmaCh12G008380 vs. NCBI nr
Match: gi|694323444|ref|XP_009352790.1| (PREDICTED: uncharacterized protein LOC103944108 [Pyrus x bretschneideri])

HSP 1 Score: 521.2 bits (1341), Expect = 1.4e-144
Identity = 248/348 (71.26%), Postives = 290/348 (83.33%), Query Frame = 1


Query: 8   QQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS 67
           + PQIHR PQ KY+D VRWLPPLSA  R AV+A+FDSDSDSSS+E HS T NP  + PQS
Sbjct: 5   EPPQIHRLPQSKYLDSVRWLPPLSALDRLAVIAVFDSDSDSSSVETHSFTPNPATLTPQS 64

Query: 68  AWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMD-ASLDSELSVPEKILHDRPI 127
            W SPSRISSLKTSQ +  PLV A+T++GSLH+L  + MD A L SELSVPEK LH+ PI
Sbjct: 65  QWVSPSRISSLKTSQSHHKPLVAAATFSGSLHILYGDSMDPAYLQSELSVPEKELHEGPI 124

Query: 128 SCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGG 187
           SCVDVMD G EC++V EDGRVNLVS+G+S L+YRR+FDS+GLVS+TAAKWASP+EFATGG
Sbjct: 125 SCVDVMDGGSECVSVGEDGRVNLVSLGDSELSYRRVFDSSGLVSFTAAKWASPSEFATGG 184

Query: 188 CGFSLQWWDQRKPGGAVCQFKGDWAS----GIVHCMDIHPSRKHTCLAGGSFGTVFAWDL 247
            GFSLQWWDQRK GGAV QFKG W+     GIVH +DIHPSRKHTCLAGGS GTVFAWDL
Sbjct: 185 YGFSLQWWDQRKRGGAVSQFKGGWSQPSTPGIVHSIDIHPSRKHTCLAGGSLGTVFAWDL 244

Query: 248 RWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGI 307
           RW QQPI+LSG+ G+  +  SPCESEVWEV+YD Y KS N+G + SS+ILP MICSEDGI
Sbjct: 245 RWPQQPILLSGV-GAGEATHSPCESEVWEVQYDHYAKSSNVGNV-SSRILPTMICSEDGI 304

Query: 308 ITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP 351
           +  +EQG++P+ELLAEPCAIN FDID Q+PS+VIC+LEWES+AIL+RP
Sbjct: 305 LAVVEQGEEPIELLAEPCAINSFDIDRQYPSDVICSLEWESIAILTRP 350

[Close]

BLAST of CmaCh12G008380 vs. NCBI nr
Match: gi|658027562|ref|XP_008349208.1| (PREDICTED: uncharacterized protein LOC103412422 [Malus domestica])

HSP 1 Score: 514.6 bits (1324), Expect = 1.3e-142
Identity = 246/348 (70.69%), Postives = 286/348 (82.18%), Query Frame = 1


Query: 8   QQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSSIEIHSLTQNPLDMAPQS 67
           + PQIHR PQ KYID VRWLPPLSA  R AV+A+FDSDSDSSS+E HS T N   + PQS
Sbjct: 5   EPPQIHRLPQSKYIDSVRWLPPLSALDRLAVIAVFDSDSDSSSVETHSFTPNSATLTPQS 64

Query: 68  AWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMD-ASLDSELSVPEKILHDRPI 127
            W SPSRISSLKTSQ +  PLV A+T++GSLH+L  + MD A L SELSVPEK  H+ PI
Sbjct: 65  QWVSPSRISSLKTSQSHHKPLVAAATFSGSLHILYGDSMDPAYLQSELSVPEKESHEGPI 124

Query: 128 SCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWASPTEFATGG 187
           SCVDVMD G EC++V EDGRVNLVS+G+S L+YRR+FDS GLVS+TAAKWASP+EFATGG
Sbjct: 125 SCVDVMDGGSECVSVGEDGRVNLVSLGDSELSYRRVFDSGGLVSFTAAKWASPSEFATGG 184

Query: 188 CGFSLQWWDQRKPGGAVCQFKGDWAS----GIVHCMDIHPSRKHTCLAGGSFGTVFAWDL 247
            GFSLQWWDQRK GGAV QFKG W+     GIVH +DIHPSRKHTCLAGGS GTVFAWDL
Sbjct: 185 YGFSLQWWDQRKHGGAVSQFKGGWSQPSTPGIVHSIDIHPSRKHTCLAGGSLGTVFAWDL 244

Query: 248 RWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILPAMICSEDGI 307
           RW QQPI+LSG+ G+  +  SPCESEVWEV+YD Y KS N+G + SS+ILP MICSEDGI
Sbjct: 245 RWPQQPILLSGV-GAGEATHSPCESEVWEVQYDHYAKSSNVGNV-SSRILPTMICSEDGI 304

Query: 308 ITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP 351
           +  +EQG++P+ELLAEPCAIN FDID Q+PS+VIC+LEWES+ IL+RP
Sbjct: 305 LAVVEQGEEPIELLAEPCAINSFDIDRQYPSDVICSLEWESIVILTRP 350

[Close]

BLAST of CmaCh12G008380 vs. NCBI nr
Match: gi|1009109732|ref|XP_015891792.1| (PREDICTED: nuclear pore complex protein NUP43 [Ziziphus jujuba])

HSP 1 Score: 513.5 bits (1321), Expect = 3.0e-142
Identity = 246/357 (68.91%), Postives = 292/357 (81.79%), Query Frame = 1


Query: 1   MAIVSPQQQPQIHRFPQFKYIDGVRWLPPLSAFGRFAVVALFDSDSDSSS--IEIHSLTQ 60
           MA+ +  + PQ+HRFPQ KY+D VRWLPP+    RFAVVA FD+DSDS    IEI SL+ 
Sbjct: 1   MAVTALSESPQVHRFPQSKYVDAVRWLPPVLPLKRFAVVAFFDTDSDSDPYFIEIQSLSS 60

Query: 61  NPLDMAPQSAWTSPSRISSLKTSQFYQNPLVFASTYTGSLHVLSVEPMD-ASLDSELSVP 120
           NPL++   S+W SPSRISSLKTSQ +  PLV A T+ GSLHVLS   +D ASL+  LSVP
Sbjct: 61  NPLNLNSHSSWVSPSRISSLKTSQSHYVPLVVAGTFAGSLHVLSAGSVDRASLEPVLSVP 120

Query: 121 EKILHDRPISCVDVMDSGGECLTVAEDGRVNLVSVGESGLNYRRIFDSNGLVSYTAAKWA 180
           EK++H+ P+SC+D+MD G EC+ V EDGRVNLVS+G+S LN+RR+FDS+GLVSYTAAKW 
Sbjct: 121 EKVMHNGPVSCLDLMDGGVECVIVGEDGRVNLVSIGDSRLNHRRVFDSSGLVSYTAAKWG 180

Query: 181 SPTEFATGGCGFSLQWWDQRKPGGAVCQFKGDWA----SGIVHCMDIHPSRKHTCLAGGS 240
           S TEFATGG GFSLQWWDQRKP GAV QFKG WA    SGIVH +DIHPSRKHTCLAGGS
Sbjct: 181 SSTEFATGGYGFSLQWWDQRKPDGAVSQFKGSWAQRKTSGIVHSIDIHPSRKHTCLAGGS 240

Query: 241 FGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVRYDPYIKSGNIGGMSSSQILP 300
            GTVFAWDLRW QQPI+LSGL G+  +  SP ESEVWEV+YD + KS N+G +SSS+ILP
Sbjct: 241 LGTVFAWDLRWPQQPIVLSGL-GAGNTEHSPSESEVWEVQYDRFAKSSNVGNISSSRILP 300

Query: 301 AMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQHPSEVICNLEWESVAILSRP 351
           AMICSEDGI++ +EQG++P+ELLAEPCAIN FDID Q+PS+VIC+LEWESVAIL+RP
Sbjct: 301 AMICSEDGILSVVEQGEEPIELLAEPCAINSFDIDRQNPSDVICSLEWESVAILTRP 356

The following BLAST results are available for this feature:

BLAST of CmaCh12G008380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NUP43_ARATH	1.1e-109	56.87	Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana GN=NUP43 PE=1 SV=1	[more]

BLAST of CmaCh12G008380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJ46_CUCSA	2.5e-188	89.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G036670 PE=4 SV=1	[more]
M5XD93_PRUPE	5.7e-140	68.64	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007862mg PE=4 SV=1	[more]
I1JGT1_SOYBN	2.1e-134	68.42	Uncharacterized protein OS=Glycine max GN=GLYMA_02G206900 PE=4 SV=1	[more]
A0A151S9K3_CAJCA	1.8e-133	69.50	Nucleoporin Nup43 OS=Cajanus cajan GN=KK1_026732 PE=4 SV=1	[more]
I1MSZ4_SOYBN	3.3e-132	67.54	Uncharacterized protein OS=Glycine max GN=GLYMA_17G071100 PE=4 SV=1	[more]

BLAST of CmaCh12G008380 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30840.1	6.5e-111	56.87	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of CmaCh12G008380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069929\|ref\|XP_008452472.1\|	5.0e-190	91.12	PREDICTED: nucleoporin Nup43 [Cucumis melo]	[more]
gi\|449453944\|ref\|XP_004144716.1\|	3.6e-188	89.71	PREDICTED: nuclear pore complex protein NUP43 [Cucumis sativus]	[more]
gi\|694323444\|ref\|XP_009352790.1\|	1.4e-144	71.26	PREDICTED: uncharacterized protein LOC103944108 [Pyrus x bretschneideri]	[more]
gi\|658027562\|ref\|XP_008349208.1\|	1.3e-142	70.69	PREDICTED: uncharacterized protein LOC103412422 [Malus domestica]	[more]
gi\|1009109732\|ref\|XP_015891792.1\|	3.0e-142	68.91	PREDICTED: nuclear pore complex protein NUP43 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005635	nuclear envelope
cellular_component	GO:0031080	nuclear pore outer ring
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G008380.1	CmaCh12G008380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	G3DSA:2.130.10.10		coord: 71..276 score: 2.2
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 17..281 score: 1.18
None	No IPR available	PANTHER	PTHR22652	NUCLEOPORIN NUP43	coord: 7..349 score: 1.7E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G008380	Cucsa.089970	Cucumber (Gy14) v1	cgycmaB0180
CmaCh12G008380	Cla020035	Watermelon (97103) v1	cmawmB171
CmaCh12G008380	Csa2G036670	Cucumber (Chinese Long) v2	cmacuB175
CmaCh12G008380	MELO3C004111	Melon (DHL92) v3.5.1	cmameB173
CmaCh12G008380	ClCG02G014260	Watermelon (Charleston Gray)	cmawcgB157
CmaCh12G008380	CSPI02G05380	Wild cucumber (PI 183967)	cmacpiB177
CmaCh12G008380	CmoCh12G008430	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G008380	Lsi11G007030	Bottle gourd (USVL1VR-Ls)	cmalsiB160
CmaCh12G008380	Cp4.1LG07g06960	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G008380	MELO3C004111.2	Melon (DHL92) v3.6.1	cmamedB188
CmaCh12G008380	CsaV3_2G007740	Cucumber (Chinese Long) v3	cmacucB0205
CmaCh12G008380	Cla97C02G040030	Watermelon (97103) v2	cmawmbB176
CmaCh12G008380	CsGy2G005510	Cucumber (Gy14) v2	cgybcmaB181
CmaCh12G008380	Carg16418	Silver-seed gourd	carcmaB1254

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G008380	Silver-seed gourd	carcmaB0711
CmaCh12G008380	Silver-seed gourd	carcmaB0785
CmaCh12G008380	Cucumber (Chinese Long) v3	cmacucB0191
CmaCh12G008380	Watermelon (97103) v2	cmawmbB191
CmaCh12G008380	Wax gourd	cmawgoB0178
CmaCh12G008380	Cucurbita maxima (Rimu)	cmacmaB123
CmaCh12G008380	Cucurbita maxima (Rimu)	cmacmaB195
CmaCh12G008380	Cucurbita moschata (Rifu)	cmacmoB172
CmaCh12G008380	Cucurbita moschata (Rifu)	cmacmoB195
CmaCh12G008380	Wild cucumber (PI 183967)	cmacpiB164
CmaCh12G008380	Melon (DHL92) v3.5.1	cmameB154
CmaCh12G008380	Watermelon (Charleston Gray)	cmawcgB168
CmaCh12G008380	Watermelon (97103) v1	cmawmB183
CmaCh12G008380	Cucurbita pepo (Zucchini)	cmacpeB176
CmaCh12G008380	Cucumber (Gy14) v2	cgybcmaB060
CmaCh12G008380	Melon (DHL92) v3.6.1	cmamedB168