Carg16418 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg16418
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	nuclear pore complex protein NUP43
Location	Cucurbita_argyrosperma_scaffold_130 : 321014 .. 322800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGTAAGCTCTGTTGCCTTAGCTTCTTATCCTTACATCACACCTAAGTAGTCATAGTCACGTGTGTTTGTATAAACTCTGCAGAAGATCAGGACTCCGAACTTGTGTTTCCTTTCCAAACTTCTTCTCTTTTTTTTTTGTCCTAAAACTTTTTTAGAGATATCATGATTGGGTCGCCCAGGCCAGATCTAGAGTCTAATCATGAGGGTAATATTTTATCATGGTGGAGTTTTCTTGCTCTCGCTATCGTTCGCCTTGGAGACATGGTCGAGAAGTACCATGCATGGTTGCTTCTGACTCCCTATGAGCCGTTTGACGACCTGAGTTTCTGTACTTTCTACCATTCAGTTTTGTTTATAGTGCTAAACACGCCTCTTAAGTCTTCTCAACCTAACTCTTTTGGTAGATTACTTGGGCAGATCTTATTGAGCTAATTATTTGTCATCTCTTGTGTAAGTTCAGGTCGATAGTGAAATTGATTTCCAGCCTCAGAATCATCACATTATAGAAATTTTTAATGGTTCTCTTTTCTTGTTTAGGTTCATACCACTTCATGTTTTTCCATCTTTCTTATCCTGCCTTATTTATGAGCTTCAGTATAAGTGTGCTTATTATTCCCCATGTTAGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGTAGAAACTGGTGCTGACCATGTTTGATTGGTCGGGGTGAACCATCGTTTATCCAAAGTCTTTTTGTTGCTACATATCTAATATATAAGTAGTTTCCTTTTTCATTCTGTTATCTAATGCCTGTTGGCTATTGTCTTATTTTCTGTTCCACATCCATAAAGTGGCTCAACTTTTCTATTTATGTGACTTGTAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGTAAGTTGCCCATATAACTATTATATGAAACTTATGTTGTTTACTTTATTCATTGTGTTGTCCCATATAACTATTATTTGAAAATAAATGGTGAGAGGGTTTAAGTGGTGGTGCTCGCTATGTTTAAGGCTCTCTAAATATGCTATGCAGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTTAGTTACACCACGTAATTTGAACTGAATTTTGATATGGATTATCATATTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTGTTTTTAATGTATTTCTTCTTTTTTTCATTCTACTTCTCGACGTGACGTTTTTACTTTTTAATTTTTATACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGCTTTATTGGAAATTTTTAATTGGCATTAT

mRNA sequence

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGATTTTCAGAAGTCATCGTCTTTTCTAAATCGTTTGGTTACAATCCACTATATCGATCCCTTTGACGATGTAAGGTTTTTTGTATCTATAGCTTTTTTACCTCTCGCAGAATGCATGCGATTTCTTAGTTTTAGGCTCATGTAAAATTTGAGGCTGTTGCTGGGTTTAGTTACACCACGTAATTTGAACTGAATTTTGATATGGATTATCATATTGGTCTTGACCATATCAGGGTGATATGAATGATGTAACTTTGCATTGTGTTTTTAATGTATTTCTTCTTTTTTTCATTCTACTTCTCGACGTGACGTTTTTACTTTTTAATTTTTATACCAATTAATGTTTACAGAATGTGAAGTACTTAGCTGAGCTTTATTGGAAATTTTTAATTGGCATTAT

Coding sequence (CDS)

GCTTCTGGTATTGTTCACTGCATAGACATCCATCCATCCCGAAAACACACTTGTTTGGCAGGAGGCTCTTTCGGAACTGTCTTTGCCTGGGATTTGAGGTGGCAACAGCAGCCTATCATTCTCTCAGGTCTAGAAGGGAGCAAAACATCAAATTTTTCGCCATGTGAAAGTGAGGTTTGGGAGGTTCACTATGATCCTTATATTAAGTCTGGCAACATTGGTGGCATGTCATCTTCGCAGATTTTACCTGCCATGATCTGCTCCGAGGACGGGATTATAACAAGTATTGAACAAGGCAAGCAGCCTGTGGAACTGCTAGCAGAACCTTGCGCAATTAATGGTTTTGACATCGACCGTCAACACCCATCGGAAGTGATATGTAATTTGGAATGGGAATCCGTGGCCATCCTGTCAAGACCTTGA

Protein sequence

ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHPSEVICNLEWESVAILSRP

Homology

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_022937892.1 (nuclear pore complex protein NUP43 [Cucurbita moschata])

HSP 1 Score: 303.1 bits (775), Expect = 4.8e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_023538014.1 (nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 9.0e-78
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
            PSEVICNLEWESVAILSRP
Sbjct: 331 RPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_022969681.1 (nuclear pore complex protein NUP43 [Cucurbita maxima])

HSP 1 Score: 297.0 bits (759), Expect = 3.4e-77
Identity = 137/140 (97.86%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHC+DIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW
Sbjct: 211 ASGIVHCMDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EV YDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDID Q
Sbjct: 271 EVRYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDHQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_022158135.1 (nuclear pore complex protein NUP43 [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 1.9e-75
Identity = 134/140 (95.71%), Postives = 136/140 (97.14%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLE SK SN SPCESEVW
Sbjct: 212 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLERSKASNLSPCESEVW 271

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKS NIGGMSSSQILPAMICSEDGI+TS+EQGKQPVELLAEPCAINGFDIDRQ
Sbjct: 272 EVHYDPYIKSCNIGGMSSSQILPAMICSEDGILTSVEQGKQPVELLAEPCAINGFDIDRQ 331

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 332 HPSEVICNLEWESVAILSRP 351

[Close]

BLAST of Carg16418 vs. NCBI nr
Match: XP_004144716.1 (PREDICTED: nuclear pore complex protein NUP43 [Cucumis sativus] >KGN61069.1 hypothetical protein Csa_2G036670 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK+PVELLAEPCAINGFDI+RQ
Sbjct: 271 EVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. TAIR10
Match: AT4G30840.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-55
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWE
Sbjct: 227 SAIVHSIDIHPSRKHTCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWE 286

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YD Y KS     +SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+
Sbjct: 287 VQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQN 346

Query: 122 PSEVICNLEWESVAILSRP 141
           P +VIC+LEWES+A+ SRP
Sbjct: 347 PQDVICSLEWESIAVFSRP 361

[Close]

BLAST of Carg16418 vs. Swiss-Prot
Match: sp|Q24JJ9|NUP43_ARATH (Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 4.7e-54
Identity = 97/139 (69.78%), Postives = 112/139 (80.58%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           S IVH IDIHPSRKHTC+AGGS GTVFAWDLRW QQPI+LSG+  S+  N    ESEVWE
Sbjct: 227 SAIVHSIDIHPSRKHTCIAGGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWE 286

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YD Y KS     +SSS+ILP M CSEDGI+  IEQG++P+ELLAEPCAIN FDIDRQ+
Sbjct: 287 VQYDSYTKS----NVSSSRILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQN 346

Query: 122 PSEVICNLEWESVAILSRP 141
           P +VIC+LEWES+A+ SRP
Sbjct: 347 PQDVICSLEWESIAVFSRP 361

[Close]

BLAST of Carg16418 vs. TrEMBL
Match: tr|A0A0A0LJ46|A0A0A0LJ46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.1e-74
Identity = 133/140 (95.00%), Postives = 138/140 (98.57%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEGSKTSN SPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGSKTSNPSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK+PVELLAEPCAINGFDI+RQ
Sbjct: 271 EVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDINRQ 330

Query: 121 HPSEVICNLEWESVAILSRP 141
           HPSEVICNLEWESVAILSRP
Sbjct: 331 HPSEVICNLEWESVAILSRP 350

[Close]

BLAST of Carg16418 vs. TrEMBL
Match: tr|A0A1S3BTA6|A0A1S3BTA6_CUCME (nuclear pore complex protein NUP43 OS=Cucumis melo OX=3656 GN=LOC103493491 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 4.0e-74
Identity = 132/139 (94.96%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 1   ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVW 60
           ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLR QQQPIILSGLEG+KTSN SPCESEVW
Sbjct: 211 ASGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRSQQQPIILSGLEGTKTSNPSPCESEVW 270

Query: 61  EVHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQ 120
           EVHYDPYIKSGN+GGMSS+QILPAMICSEDGI+TSIEQGK+PVELLAEPCAINGFDIDRQ
Sbjct: 271 EVHYDPYIKSGNLGGMSSTQILPAMICSEDGILTSIEQGKEPVELLAEPCAINGFDIDRQ 330

Query: 121 HPSEVICNLEWESVAILSR 140
           HPSEVICNLEWESVAILSR
Sbjct: 331 HPSEVICNLEWESVAILSR 349

[Close]

BLAST of Carg16418 vs. TrEMBL
Match: tr|D7U1G4|D7U1G4_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0037g00820 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.5e-62
Identity = 108/139 (77.70%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           SGIVH IDIHPSRKHTCLAGGS GTVFAWDLRWQQQPIILSG+  S+ +  SPCESEVWE
Sbjct: 219 SGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQPIILSGVGTSEVATHSPCESEVWE 278

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YDPY+++ N G MSSS+ILPAM+CSEDGI+  +EQG++P+ELLAEPCAIN FDIDRQ+
Sbjct: 279 VKYDPYMRTSNFGNMSSSRILPAMLCSEDGILAVVEQGEEPIELLAEPCAINSFDIDRQN 338

Query: 122 PSEVICNLEWESVAILSRP 141
           PS+VIC+LEWES+AILSRP
Sbjct: 339 PSDVICSLEWESIAILSRP 357

[Close]

BLAST of Carg16418 vs. TrEMBL
Match: tr|A5BZH5|A5BZH5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017836 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.5e-60
Identity = 104/138 (75.36%), Postives = 123/138 (89.13%), Query Frame = 0


Query: 3   GIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWEV 62
           G++H IDIHPSRKHTCLAGGS GTVFAWDLRWQQQPIILSG+  S+ +  SPCESEVWEV
Sbjct: 268 GLLHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQPIILSGVGTSEVATHSPCESEVWEV 327

Query: 63  HYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQHP 122
            YDPY+++ N G MSSS+ILPAM+CSEDGI+  +EQG++P+ELLAEPCAIN FDIDRQ+P
Sbjct: 328 KYDPYMRTSNFGNMSSSRILPAMLCSEDGILAVVEQGEEPIELLAEPCAINSFDIDRQNP 387

Query: 123 SEVICNLEWESVAILSRP 141
            +VIC+LEWES+AILSRP
Sbjct: 388 XDVICSLEWESIAILSRP 405

[Close]

BLAST of Carg16418 vs. TrEMBL
Match: tr|A0A2P4IRZ3|A0A2P4IRZ3_QUESU (Nuclear pore complex protein nup43 OS=Quercus suber OX=58331 GN=CFP56_65407 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 5.8e-57
Identity = 102/139 (73.38%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 2   SGIVHCIDIHPSRKHTCLAGGSFGTVFAWDLRWQQQPIILSGLEGSKTSNFSPCESEVWE 61
           SGIVH IDIHPSRKHTCLAGGS GTVFAWDLRWQQQPIILSG+     +  S CESEVWE
Sbjct: 225 SGIVHSIDIHPSRKHTCLAGGSLGTVFAWDLRWQQQPIILSGIGAGDAAIPSACESEVWE 284

Query: 62  VHYDPYIKSGNIGGMSSSQILPAMICSEDGIITSIEQGKQPVELLAEPCAINGFDIDRQH 121
           V YD Y KS N+G +SSS+ILPA+ICSEDGI+  +EQ ++P+ELLAEPCAIN FDIDR++
Sbjct: 285 VQYDCYTKSTNMGNISSSRILPAIICSEDGILAVVEQDEEPIELLAEPCAINSFDIDREN 344

Query: 122 PSEVICNLEWESVAILSRP 141
           PS++IC+LEWES+AIL+RP
Sbjct: 345 PSDMICSLEWESIAILTRP 363

The following BLAST results are available for this feature:

BLAST of Carg16418 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937892.1	4.8e-79	100.00	nuclear pore complex protein NUP43 [Cucurbita moschata]	[more]
XP_023538014.1	9.0e-78	98.57	nuclear pore complex protein NUP43 [Cucurbita pepo subsp. pepo]	[more]
XP_022969681.1	3.4e-77	97.86	nuclear pore complex protein NUP43 [Cucurbita maxima]	[more]
XP_022158135.1	1.9e-75	95.71	nuclear pore complex protein NUP43 [Momordica charantia]	[more]
XP_004144716.1	1.6e-74	95.00	PREDICTED: nuclear pore complex protein NUP43 [Cucumis sativus] >KGN61069.1 hypo...	[more]

BLAST of Carg16418 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G30840.1	2.6e-55	69.78	Transducin/WD40 repeat-like superfamily protein	[more]

BLAST of Carg16418 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q24JJ9\|NUP43_ARATH	4.7e-54	69.78	Nuclear pore complex protein NUP43 OS=Arabidopsis thaliana OX=3702 GN=NUP43 PE=1...	[more]

BLAST of Carg16418 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ46\|A0A0A0LJ46_CUCSA	1.1e-74	95.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G036670 PE=4 SV=1	[more]
tr\|A0A1S3BTA6\|A0A1S3BTA6_CUCME	4.0e-74	94.96	nuclear pore complex protein NUP43 OS=Cucumis melo OX=3656 GN=LOC103493491 PE=4 ...	[more]
tr\|D7U1G4\|D7U1G4_VITVI	3.5e-62	77.70	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_11s0037g00820 PE=4 SV=...	[more]
tr\|A5BZH5\|A5BZH5_VITVI	1.5e-60	75.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_017836 PE=4 SV=1	[more]
tr\|A0A2P4IRZ3\|A0A2P4IRZ3_QUESU	5.8e-57	73.38	Nuclear pore complex protein nup43 OS=Quercus suber OX=58331 GN=CFP56_65407 PE=4...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031080	nuclear pore outer ring

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR036322	WD40_repeat_dom_sf
IPR037628	Nup43
IPR015943	WD40/YVTN_repeat-like_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031080	nuclear pore outer ring
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg16418-RA	Carg16418-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	G3DSA:2.130.10.10		coord: 1..138 e-value: 7.2E-8 score: 34.2
IPR037628	Nucleoporin Nup43	PANTHER	PTHR22652	NUCLEOPORIN NUP43	coord: 2..139
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	SSF50978	WD40 repeat-like	coord: 3..93

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg16418	Cla020035	Watermelon (97103) v1	carwmB0913
Carg16418	Csa2G036670	Cucumber (Chinese Long) v2	carcuB0929
Carg16418	MELO3C004111	Melon (DHL92) v3.5.1	carmeB0900
Carg16418	ClCG02G014260	Watermelon (Charleston Gray)	carwcgB0889
Carg16418	CSPI02G05380	Wild cucumber (PI 183967)	carcpiB0952
Carg16418	Cucsa.089970	Cucumber (Gy14) v1	carcgyB1029
Carg16418	CmaCh12G008380	Cucurbita maxima (Rimu)	carcmaB1254
Carg16418	CmoCh12G008430	Cucurbita moschata (Rifu)	carcmoB1223
Carg16418	Lsi11G007030	Bottle gourd (USVL1VR-Ls)	carlsiB829
Carg16418	Cp4.1LG07g06960	Cucurbita pepo (Zucchini)	carcpeB1263
Carg16418	CsGy2G005510	Cucumber (Gy14) v2	carcgybB0902
Carg16418	MELO3C004111.2	Melon (DHL92) v3.6.1	carmedB0908
Carg16418	CsaV3_2G007740	Cucumber (Chinese Long) v3	carcucB0952
Carg16418	Cla97C02G040030	Watermelon (97103) v2	carwmbB0955
Carg16418	Bhi06G001203	Wax gourd	carwgoB1054

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg16418	Cucurbita maxima (Rimu)	carcmaB1253
Carg16418	Cucurbita maxima (Rimu)	carcmaB1255
Carg16418	Cucurbita moschata (Rifu)	carcmoB1224
Carg16418	Cucurbita pepo (Zucchini)	carcpeB1260
Carg16418	Wild cucumber (PI 183967)	carcpiB0951
Carg16418	Cucumber (Chinese Long) v3	carcucB0951
Carg16418	Melon (DHL92) v3.5.1	carmeB0898
Carg16418	Melon (DHL92) v3.6.1	carmedB0907
Carg16418	Watermelon (Charleston Gray)	carwcgB0892
Carg16418	Watermelon (97103) v1	carwmB0915
Carg16418	Watermelon (97103) v2	carwmbB0959
Carg16418	Silver-seed gourd	carcarB493
Carg16418	Silver-seed gourd	carcarB523
Carg16418	Cucumber (Gy14) v2	carcgybB0901