CmaCh12G003430 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G003430
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr12 : 1740163 .. 1740655 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATGTGAGTCTATACGCACTATATTTGAGTCTATACGTACTATATTTCATAAGTCTTATGATATAGCAGAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

mRNA sequence

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

Coding sequence (CDS)

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAA

Protein sequence

MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPIT

Homology

[Close]

BLAST of CmaCh12G003430 vs. TrEMBL
Match: A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.1e-25
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLHSHP +H  P           + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCP 105
            T  C  Q  + DEEK   VGWPPI SWRKK  D   QPPQT+ENR P
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFDWHTQPPQTIENRRP 106

[Close]

BLAST of CmaCh12G003430 vs. TrEMBL
Match: V4TSZ0_9ROSI (Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430 vs. TrEMBL
Match: V4UCB9_9ROSI (Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430 vs. TrEMBL
Match: D9ZIN6_MALDO (Auxin-responsive protein OS=Malus domestica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 41/121 (33.88%), Postives = 58/121 (47.93%), Query Frame = 1


Query: 1   MELQLGLSLPLHSH--PLHGAPTNCIKHP----------------------RVTNERPNT 60
           MELQLGL+L L  H  P+ G   N +                          V  E+ ++
Sbjct: 1   MELQLGLALALPDHHSPVKGFDMNGVNRSVEKKEIVGLESKSQVGNYKRSFDVAFEKSSS 60

Query: 61  S---------PLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKK 89
           +          LL WND+P +EDD D+ ++ R+    I ++D+  NH VGWPPI SWRKK
Sbjct: 61  TGAGNESKMLALLLWNDQPNEEDDDDKGRKRRNSCRSIIKNDDGGNHVVGWPPIKSWRKK 120

[Close]

BLAST of CmaCh12G003430 vs. TrEMBL
Match: B9RP35_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 48/128 (37.50%), Postives = 63/128 (49.22%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAP-------TNC-------------IKHPRVTNERPNTSPLL 60
           MELQLGLSL  ++    G           C             +K+      +  + PLL
Sbjct: 1   MELQLGLSLSTNNFESKGMMGFKLWRNDECLLDKKKRSFEDAFVKNTNYNKGKETSLPLL 60

Query: 61  SWNDKPKDEDDPDRPQETR-SCTFQIDRDD----EEKNHGVGWPPIGSWRKKVL-DQLPQ 103
           SW+ +P DEDD ++ +  R SC   ID +D    EE+   VGWPPI SWRKK+L DQ   
Sbjct: 61  SWSGQPNDEDDDEQRKRKRLSCP--IDENDGVVAEEEEQVVGWPPIKSWRKKLLHDQQHG 120

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: gi|659088920|ref|XP_008445232.1| (PREDICTED: auxin-responsive protein IAA13-like [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLH+HP +H  P    +H     + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 37  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 96

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPI 106
            T  C  Q  + DEEK   VGWPPI SWRKK      QPPQT++NR PI
Sbjct: 97  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFHWHTQPPQTIDNRRPI 143

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: gi|449442162|ref|XP_004138851.1| (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLHSHP +H  P           + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCP 105
            T  C  Q  + DEEK   VGWPPI SWRKK  D   QPPQT+ENR P
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFDWHTQPPQTIENRRP 106

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: gi|567916802|ref|XP_006450407.1| (hypothetical protein CICLE_v10009245mg [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: gi|567916804|ref|XP_006450408.1| (hypothetical protein CICLE_v10009245mg [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430 vs. NCBI nr
Match: gi|719981579|ref|XP_010250166.1| (PREDICTED: auxin-responsive protein IAA5-like [Nelumbo nucifera])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 46/124 (37.10%), Postives = 57/124 (45.97%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPL-------------------------HGAPTNCIKHPR------- 60
           MELQLGL+LP  SHP                          HG  +   ++ +       
Sbjct: 1   MELQLGLALP--SHPTADFDLKKYAYGGYGPNQLVGTEIWSHGGRSGINQNNKRSFDDTF 60

Query: 61  -VTNERPNTSPLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKK 92
             +N    T PLLSWNDKP D+DD        SC F  ++ +EE N  VGWPPI SWRKK
Sbjct: 61  DKSNPEIRTLPLLSWNDKPNDDDDYKGRDRGSSC-FLDNKVEEEANSIVGWPPINSWRKK 120

The following BLAST results are available for this feature:

BLAST of CmaCh12G003430 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh12G003430 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPM6_CUCSA	9.1e-25	60.19	Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G381840 PE=3 SV=1	[more]
V4TSZ0_9ROSI	3.9e-07	36.61	Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1	[more]
V4UCB9_9ROSI	3.9e-07	36.61	Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1	[more]
D9ZIN6_MALDO	1.9e-06	33.88	Auxin-responsive protein OS=Malus domestica GN=IAA9 PE=2 SV=1	[more]
B9RP35_RICCO	2.5e-06	37.50	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1	[more]

BLAST of CmaCh12G003430 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh12G003430 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088920\|ref\|XP_008445232.1\|	2.0e-25	58.72	PREDICTED: auxin-responsive protein IAA13-like [Cucumis melo]	[more]
gi\|449442162\|ref\|XP_004138851.1\|	1.3e-24	60.19	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus]	[more]
gi\|567916802\|ref\|XP_006450407.1\|	5.5e-07	36.61	hypothetical protein CICLE_v10009245mg [Citrus clementina]	[more]
gi\|567916804\|ref\|XP_006450408.1\|	5.5e-07	36.61	hypothetical protein CICLE_v10009245mg [Citrus clementina]	[more]
gi\|719981579\|ref\|XP_010250166.1\|	7.2e-07	37.10	PREDICTED: auxin-responsive protein IAA5-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003311	AUX_IAA

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G003430.1	CmaCh12G003430.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 1..102 score: 1.7
None	No IPR available	PANTHER	PTHR31734:SF38	SUBFAMILY NOT NAMED	coord: 1..102 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G003430	Cucsa.162510	Cucumber (Gy14) v1	cgycmaB0447
CmaCh12G003430	CmoCh12G002920	Cucurbita moschata (Rifu)	cmacmoB176
CmaCh12G003430	CmoCh05G003790	Cucurbita moschata (Rifu)	cmacmoB199
CmaCh12G003430	Lsi08G012110	Bottle gourd (USVL1VR-Ls)	cmalsiB184
CmaCh12G003430	Cp4.1LG11g03150	Cucurbita pepo (Zucchini)	cmacpeB179
CmaCh12G003430	MELO3C011268.2	Melon (DHL92) v3.6.1	cmamedB177
CmaCh12G003430	CsaV3_2G032150	Cucumber (Chinese Long) v3	cmacucB0192
CmaCh12G003430	Cla97C08G156790	Watermelon (97103) v2	cmawmbB194
CmaCh12G003430	Bhi04G000778	Wax gourd	cmawgoB0209
CmaCh12G003430	CsGy2G023370	Cucumber (Gy14) v2	cgybcmaB168
CmaCh12G003430	Carg09338	Silver-seed gourd	carcmaB0183
CmaCh12G003430	Carg03932	Silver-seed gourd	carcmaB1349

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G003430	Cucumber (Gy14) v2	cgybcmaB908
CmaCh12G003430	Silver-seed gourd	carcmaB0273
CmaCh12G003430	Silver-seed gourd	carcmaB0893
CmaCh12G003430	Silver-seed gourd	carcmaB0938
CmaCh12G003430	Watermelon (97103) v2	cmawmbB193
CmaCh12G003430	Cucurbita maxima (Rimu)	cmacmaB199
CmaCh12G003430	Cucurbita maxima (Rimu)	cmacmaB175
CmaCh12G003430	Cucurbita maxima (Rimu)	cmacmaB183
CmaCh12G003430	Cucurbita moschata (Rifu)	cmacmoB185
CmaCh12G003430	Wild cucumber (PI 183967)	cmacpiB165
CmaCh12G003430	Cucumber (Chinese Long) v2	cmacuB164
CmaCh12G003430	Melon (DHL92) v3.5.1	cmameB162
CmaCh12G003430	Watermelon (Charleston Gray)	cmawcgB169
CmaCh12G003430	Watermelon (97103) v1	cmawmB148
CmaCh12G003430	Cucurbita pepo (Zucchini)	cmacpeB191
CmaCh12G003430	Cucurbita pepo (Zucchini)	cmacpeB194
CmaCh12G003430	Cucurbita pepo (Zucchini)	cmacpeB203