CmaCh12G003430.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G003430.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr12 : 1740163 .. 1740655 (-)
Sequence length	427

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATGTGAGTCTATACGCACTATATTTGAGTCTATACGTACTATATTTCATAAGTCTTATGATATAGCAGAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

mRNA sequence

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAAGAATCGTTATGGAATAAAACACATATCTCGTTTGAAATATTTTAAAAGTTGTATTAGTACCTTTAATTATTAAAAAAAATATATGGCCTACCATTTTCATATTGTT

Coding sequence (CDS)

ATGGAGCTTCAACTTGGCCTCTCTCTTCCCCTTCACAGCCACCCCCTCCATGGCGCTCCTACAAACTGCATCAAACATCCACGCGTCACAAATGAGCGGCCGAACACTTCGCCCTTGCTATCATGGAATGATAAGCCTAAGGATGAAGACGATCCTGATCGTCCACAAGAGACACGCTCTTGCACCTTTCAAATAGATAGAGATGATGAAGAGAAGAACCACGGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTACCTCAACCACCACAAACAGTGGAGAACCGCTGTCCAATAACATAA

Protein sequence

MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERPNTSPLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPIT

Homology

[Close]

BLAST of CmaCh12G003430.1 vs. TrEMBL
Match: A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 9.1e-25
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLHSHP +H  P           + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCP 105
            T  C  Q  + DEEK   VGWPPI SWRKK  D   QPPQT+ENR P
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFDWHTQPPQTIENRRP 106

[Close]

BLAST of CmaCh12G003430.1 vs. TrEMBL
Match: V4TSZ0_9ROSI (Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430.1 vs. TrEMBL
Match: V4UCB9_9ROSI (Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.9e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430.1 vs. TrEMBL
Match: D9ZIN6_MALDO (Auxin-responsive protein OS=Malus domestica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-06
Identity = 41/121 (33.88%), Postives = 58/121 (47.93%), Query Frame = 1


Query: 1   MELQLGLSLPLHSH--PLHGAPTNCIKHP----------------------RVTNERPNT 60
           MELQLGL+L L  H  P+ G   N +                          V  E+ ++
Sbjct: 1   MELQLGLALALPDHHSPVKGFDMNGVNRSVEKKEIVGLESKSQVGNYKRSFDVAFEKSSS 60

Query: 61  S---------PLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKK 89
           +          LL WND+P +EDD D+ ++ R+    I ++D+  NH VGWPPI SWRKK
Sbjct: 61  TGAGNESKMLALLLWNDQPNEEDDDDKGRKRRNSCRSIIKNDDGGNHVVGWPPIKSWRKK 120

[Close]

BLAST of CmaCh12G003430.1 vs. TrEMBL
Match: B9RP35_RICCO (Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 48/128 (37.50%), Postives = 63/128 (49.22%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAP-------TNC-------------IKHPRVTNERPNTSPLL 60
           MELQLGLSL  ++    G           C             +K+      +  + PLL
Sbjct: 1   MELQLGLSLSTNNFESKGMMGFKLWRNDECLLDKKKRSFEDAFVKNTNYNKGKETSLPLL 60

Query: 61  SWNDKPKDEDDPDRPQETR-SCTFQIDRDD----EEKNHGVGWPPIGSWRKKVL-DQLPQ 103
           SW+ +P DEDD ++ +  R SC   ID +D    EE+   VGWPPI SWRKK+L DQ   
Sbjct: 61  SWSGQPNDEDDDEQRKRKRLSCP--IDENDGVVAEEEEQVVGWPPIKSWRKKLLHDQQHG 120

[Close]

BLAST of CmaCh12G003430.1 vs. NCBI nr
Match: gi|659088920|ref|XP_008445232.1| (PREDICTED: auxin-responsive protein IAA13-like [Cucumis melo])

HSP 1 Score: 123.6 bits (309), Expect = 2.0e-25
Identity = 64/109 (58.72%), Postives = 72/109 (66.06%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLH+HP +H  P    +H     + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 37  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 96

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCPI 106
            T  C  Q  + DEEK   VGWPPI SWRKK      QPPQT++NR PI
Sbjct: 97  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFHWHTQPPQTIDNRRPI 143

[Close]

BLAST of CmaCh12G003430.1 vs. NCBI nr
Match: gi|449442162|ref|XP_004138851.1| (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-24
Identity = 65/108 (60.19%), Postives = 70/108 (64.81%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHP-LHGAPTNCIKHPR---VTNERPNTSPLLSWNDKPKDEDDPDRPQ 60
           MELQLGLSLPLHSHP +H  P           + NE P T PLLSWNDKPKDEDDP  P+
Sbjct: 1   MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61  ETRSCTFQIDRDDEEKNHGVGWPPIGSWRKKVLDQLPQPPQTVENRCP 105
            T  C  Q  + DEEK   VGWPPI SWRKK  D   QPPQT+ENR P
Sbjct: 61  GTHFCNIQ--KKDEEKKQAVGWPPIESWRKKAFDWHTQPPQTIENRRP 106

[Close]

BLAST of CmaCh12G003430.1 vs. NCBI nr
Match: gi|567916802|ref|XP_006450407.1| (hypothetical protein CICLE_v10009245mg [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430.1 vs. NCBI nr
Match: gi|567916804|ref|XP_006450408.1| (hypothetical protein CICLE_v10009245mg [Citrus clementina])

HSP 1 Score: 62.4 bits (150), Expect = 5.5e-07
Identity = 41/112 (36.61%), Postives = 55/112 (49.11%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPLHGAPTNCIKHPRVTNERP--------------NTSPLLSWNDKP 60
           MELQLGL+LP H++P  G            N+R                  PLL W+  P
Sbjct: 50  MELQLGLALPNHNNPSAGNGVGFKSRKDAANKRSFQEAFGNYKIRDELQMMPLLLWSGPP 109

Query: 61  KDEDDPDRPQETRSCTFQIDRDDEEKNH-GVGWPPIGSWRKKVLDQLPQPPQ 98
            +EDD  + Q+ R+    I++++EE     VGWPPI SWRKK+L     P Q
Sbjct: 110 DEEDDDRKGQKKRNSCNNINKNEEEGEELVVGWPPIQSWRKKLLLHGQHPQQ 161

[Close]

BLAST of CmaCh12G003430.1 vs. NCBI nr
Match: gi|719981579|ref|XP_010250166.1| (PREDICTED: auxin-responsive protein IAA5-like [Nelumbo nucifera])

HSP 1 Score: 62.0 bits (149), Expect = 7.2e-07
Identity = 46/124 (37.10%), Postives = 57/124 (45.97%), Query Frame = 1


Query: 1   MELQLGLSLPLHSHPL-------------------------HGAPTNCIKHPR------- 60
           MELQLGL+LP  SHP                          HG  +   ++ +       
Sbjct: 1   MELQLGLALP--SHPTADFDLKKYAYGGYGPNQLVGTEIWSHGGRSGINQNNKRSFDDTF 60

Query: 61  -VTNERPNTSPLLSWNDKPKDEDDPDRPQETRSCTFQIDRDDEEKNHGVGWPPIGSWRKK 92
             +N    T PLLSWNDKP D+DD        SC F  ++ +EE N  VGWPPI SWRKK
Sbjct: 61  DKSNPEIRTLPLLSWNDKPNDDDDYKGRDRGSSC-FLDNKVEEEANSIVGWPPINSWRKK 120

The following BLAST results are available for this feature:

BLAST of CmaCh12G003430.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh12G003430.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPM6_CUCSA	9.1e-25	60.19	Auxin-responsive protein OS=Cucumis sativus GN=Csa_2G381840 PE=3 SV=1	[more]
V4TSZ0_9ROSI	3.9e-07	36.61	Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1	[more]
V4UCB9_9ROSI	3.9e-07	36.61	Auxin-responsive protein OS=Citrus clementina GN=CICLE_v10009245mg PE=3 SV=1	[more]
D9ZIN6_MALDO	1.9e-06	33.88	Auxin-responsive protein OS=Malus domestica GN=IAA9 PE=2 SV=1	[more]
B9RP35_RICCO	2.5e-06	37.50	Auxin-responsive protein OS=Ricinus communis GN=RCOM_0923890 PE=3 SV=1	[more]

BLAST of CmaCh12G003430.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh12G003430.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088920\|ref\|XP_008445232.1\|	2.0e-25	58.72	PREDICTED: auxin-responsive protein IAA13-like [Cucumis melo]	[more]
gi\|449442162\|ref\|XP_004138851.1\|	1.3e-24	60.19	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus]	[more]
gi\|567916802\|ref\|XP_006450407.1\|	5.5e-07	36.61	hypothetical protein CICLE_v10009245mg [Citrus clementina]	[more]
gi\|567916804\|ref\|XP_006450408.1\|	5.5e-07	36.61	hypothetical protein CICLE_v10009245mg [Citrus clementina]	[more]
gi\|719981579\|ref\|XP_010250166.1\|	7.2e-07	37.10	PREDICTED: auxin-responsive protein IAA5-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003311	AUX_IAA

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G003430	CmaCh12G003430	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003430.1	CmaCh12G003430.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003430.1.three_prime_UTR.1	CmaCh12G003430.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003430.1.CDS.2	CmaCh12G003430.1.CDS.2	CDS
CmaCh12G003430.1.CDS.1	CmaCh12G003430.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G003430.1.exon.2	CmaCh12G003430.1.exon.2	exon
CmaCh12G003430.1.exon.1	CmaCh12G003430.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 1..102 score: 1.7
None	No IPR available	PANTHER	PTHR31734:SF38	SUBFAMILY NOT NAMED	coord: 1..102 score: 1.7