Carg09338 (gene) Silver-seed gourd

Overview
NameCarg09338
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionAuxin-responsive protein
LocationCucurbita_argyrosperma_scaffold_018 : 782803 .. 783856 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTGTATCACATTTGCCATCCTTTTTCCTGACTCAACCTGCTCCCCTGCTTTTTGTTTTCCCTATATATATCACTCATTTCTTATGCCTCTTCCTTTAAGCTTCTCTTGAAAACCTGAAACTGAAATGGAGCTCCAACTTGGCCTCTCCCTTCCCCTCCATAACTATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAGTCAGTCCAAACTAATACAACTCTTATGATACTTTTAAATTGCTGTTATTAATTATGTCACAGTTTCATATGATGCAGAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTGTAAATTATCCACTTTTTCACATTCATTCCATCAACCCCACCAGAAAAATCATAGTATTTATCCATAAATTTGAATTCTTTCTGTAACAGATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAAGTGCGTTCTTAAGTTCCATTCACTCTCTTTTTCAGGGGAAAAAGACAGCAAATGGCTAAATTCTAATTTATTCTCTCTGATGTTTGCTTTGTTTTTTGCTGCAGCTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAAAGTTTGCATATACGACACAAATTATTTCTGAATCATATTCCACATGTAATCATATATAATATATATTAATAGCATCAATTATTTAG

mRNA sequence

TGTGTATCACATTTGCCATCCTTTTTCCTGACTCAACCTGCTCCCCTGCTTTTTGTTTTCCCTATATATATCACTCATTTCTTATGCCTCTTCCTTTAAGCTTCTCTTGAAAACCTGAAACTGAAATGGAGCTCCAACTTGGCCTCTCCCTTCCCCTCCATAACTATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAACTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAAAGTTTGCATATACGACACAAATTATTTCTGAATCATATTCCACATGTAATCATATATAATATATATTAATAGCATCAATTATTTAG

Coding sequence (CDS)

ATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAACTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAA

Protein sequence

MLLNIHALGMSPQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Homology
[Close]
BLAST of Carg09338 vs. NCBI nr
Match: XP_022962174.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 1.5e-90
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKDDDGSPH  GTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP
Sbjct: 26  PQTLPLLSWNDKPKDDDGSPHPEGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 85

Query: 72  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 131
           PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID
Sbjct: 86  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 145

Query: 132 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 146 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 190

[Close]
BLAST of Carg09338 vs. NCBI nr
Match: XP_023546551.1 (auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.8 bits (865), Expect = 2.2e-89
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           P+TLPLLSWNDKPKDDD SPH GGTHFSTIQK+DEEKNPSVGWPPIETWRKKALLQHPQP
Sbjct: 83  PRTLPLLSWNDKPKDDDDSPHTGGTHFSTIQKDDEEKNPSVGWPPIETWRKKALLQHPQP 142

Query: 72  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 131
           PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID
Sbjct: 143 PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 202

Query: 132 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +KCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 203 SKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 247

[Close]
BLAST of Carg09338 vs. NCBI nr
Match: XP_022996632.1 (auxin-responsive protein IAA29-like [Cucurbita maxima])

HSP 1 Score: 316.2 bits (809), Expect = 6.9e-83
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0 

Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVEN 77
           LSWNDKPKDDD SPH GGTHFSTIQKED+EKNPSVGWPPIETWRKKALLQHPQPP  +EN
Sbjct: 25  LSWNDKPKDDDDSPHPGGTHFSTIQKEDDEKNPSVGWPPIETWRKKALLQHPQPP--LEN 84

Query: 78  RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDF 137
           RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT SNYEAIDNKCWDF
Sbjct: 85  RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTASNYEAIDNKCWDF 144

Query: 138 TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 145 TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 181

[Close]
BLAST of Carg09338 vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 130/173 (75.14%), Postives = 144/173 (83.24%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPKGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQP 97

Query: 72  PQTVENR--------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT 131
           PQT++NR        SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTALI MFT
Sbjct: 98  PQTIDNRRPIVADHQSNQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMFT 157

Query: 132 TSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           T+  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LVRKRNKE
Sbjct: 158 TN--KGMDNNDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVRKRNKE 208

[Close]
BLAST of Carg09338 vs. NCBI nr
Match: XP_004138851.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hypothetical protein Csa_2G381840 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 128/172 (74.42%), Postives = 142/172 (82.56%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPRGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQP 97

Query: 72  PQTVENR-------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 131
           PQT+ENR       SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTAL+ MFTT
Sbjct: 98  PQTIENRRPAVADQSNQNGGRNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALLTMFTT 157

Query: 132 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LV  RNKE
Sbjct: 158 N--KGMDNSDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVGNRNKE 207

[Close]
BLAST of Carg09338 vs. TAIR10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-19
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0 

Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS--------VGWPPIETWRKKALLQHP 77
           L+ N++P + +GS       F + +K    K+P+        VGWPP+ ++RK  ++   
Sbjct: 42  LNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMV--- 101

Query: 78  QPPQTVENRSNQNGGPN-SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT---- 137
                  +    +GGP  + FVKV M+G    RK+DLR+Y S++ L  AL  MF++    
Sbjct: 102 -------SCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMG 161

Query: 138 ------------SNYEAID-NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
                       +  + +D    WD+   YED+DGDW+L  D+PW  FV++ +RL+++
Sbjct: 162 KHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

[Close]
BLAST of Carg09338 vs. TAIR10
Match: AT5G65670.1 (indole-3-acetic acid inducible 9)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 0 

Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNS--LFVKVKMEGVAIARKLDLRLYH 111
           VGWPP+ ++RK  L        T +N    +G P S  LFVKV M+G    RK+DLR Y 
Sbjct: 185 VGWPPVRSYRKNTL------ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 244

Query: 112 SHNSLKTALIAMFTT-------SNYEA-------------IDNKCWDFTLIYEDEDGDWL 170
           ++  L +AL  MFTT       SN  A             ++ K  D+ L YED+DGDW+
Sbjct: 245 NYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGK--DYVLTYEDKDGDWM 304

[Close]
BLAST of Carg09338 vs. TAIR10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29)

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17
Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 0 

Query: 87  SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDFTLIYEDEDG 146
           S++VKVKM+GVAIARK+D++L++S+ SL  +LI MFT   YE  D +  ++T  ++ ++G
Sbjct: 159 SMYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMFT--EYEDCDREDTNYTFTFQGKEG 218

Query: 147 DWLLAEDLPWNSFVESVRRLKVL 170
           DWLL  D+ W  F ESV R+ ++
Sbjct: 219 DWLLRGDVTWKIFAESVHRISII 239

[Close]
BLAST of Carg09338 vs. TAIR10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17
Identity = 49/144 (34.03%), Postives = 73/144 (50.69%), Query Frame = 0 

Query: 52  VGWPPIETWRKKALLQHPQPPQTVE-----------NRSNQNGGPNSLFVKVKMEGVAIA 111
           VGWPPI T+R  +++   +   T +           NRS+     NS+FVKV M+G+ I 
Sbjct: 90  VGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIG 149

Query: 112 RKLDLRLYHSHNSLKTALIAMF-----------TTSNYEA----IDNKCWDFTLIYEDED 170
           RK+DL  +  + SL   L  MF           T  + E     + +      L YED++
Sbjct: 150 RKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYEDKE 209

[Close]
BLAST of Carg09338 vs. TAIR10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0 

Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSH 111
           VGWPP+ ++RK  +       Q+ +N S   G    ++VKV M+G    RK+DL  Y  +
Sbjct: 66  VGWPPVRSYRKNNI-------QSKKNESEHEG--QGIYVKVSMDGAPYLRKIDLSCYKGY 125

Query: 112 NSLKTALIAMFTTS---NYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKV 170
           + L  AL  MF  S    +E    K  DF   YED+DGDW+L  D+PW  F+ + +RL++
Sbjct: 126 SELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRI 177

[Close]
BLAST of Carg09338 vs. Swiss-Prot
Match: sp|P13089|AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 0 

Query: 40  TIQKEDEEKNPS----VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKME 99
           T+   D  K P+    VGWPP+ ++RK  L       ++V   S +N  PN+ FVKV M+
Sbjct: 76  TLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQ----KSVGEESEKNSSPNASFVKVSMD 135

Query: 100 GVAIARKLDLRLYHSHNSLKTAL---IAMFTTSNYEAIDNKCW-------------DFTL 159
           G    RK+DL++Y S+  L  +L    + FT  N E+   K +             D+  
Sbjct: 136 GAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVP 195

Query: 160 IYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRK 173
            YED+DGDW+L  D+PW  FVES +RL+++  K
Sbjct: 196 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGK 224

[Close]
BLAST of Carg09338 vs. Swiss-Prot
Match: sp|P93830|IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0 

Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS--------VGWPPIETWRKKALLQHP 77
           L+ N++P + +GS       F + +K    K+P+        VGWPP+ ++RK  ++   
Sbjct: 42  LNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMV--- 101

Query: 78  QPPQTVENRSNQNGGPN-SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT---- 137
                  +    +GGP  + FVKV M+G    RK+DLR+Y S++ L  AL  MF++    
Sbjct: 102 -------SCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMG 161

Query: 138 ------------SNYEAID-NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
                       +  + +D    WD+   YED+DGDW+L  D+PW  FV++ +RL+++
Sbjct: 162 KHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

[Close]
BLAST of Carg09338 vs. Swiss-Prot
Match: sp|Q75GB1|IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-17
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 0 

Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSH 111
           VGWPPI ++RK  +  +       +  + Q  G   L+VKV M+G    RK+DL+ Y ++
Sbjct: 118 VGWPPIRSYRKNTMATNQLKSSKEDAEAKQ--GQGFLYVKVSMDGAPYLRKVDLKTYKNY 177

Query: 112 NSLKTALIAMF----TTSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLK 170
             L TAL  MF    T  +  +   K  ++ L YED+DGDW+L  D+PW  F  S RRL+
Sbjct: 178 KDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLR 237

[Close]
BLAST of Carg09338 vs. Swiss-Prot
Match: sp|Q38827|IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-17
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 0 

Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNS--LFVKVKMEGVAIARKLDLRLYH 111
           VGWPP+ ++RK  L        T +N    +G P S  LFVKV M+G    RK+DLR Y 
Sbjct: 185 VGWPPVRSYRKNTL------ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 244

Query: 112 SHNSLKTALIAMFTT-------SNYEA-------------IDNKCWDFTLIYEDEDGDWL 170
           ++  L +AL  MFTT       SN  A             ++ K  D+ L YED+DGDW+
Sbjct: 245 NYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGK--DYVLTYEDKDGDWM 304

[Close]
BLAST of Carg09338 vs. Swiss-Prot
Match: sp|O24542|AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-17
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 0 

Query: 21  NDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS----VGWPPIETWRKKALLQHPQPPQTVE 80
           ++K    + S     ++ S + KED    P+    VGWPPI ++RK            V+
Sbjct: 37  SNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQVVGWPPIRSYRK----------NNVQ 96

Query: 81  NRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCW- 140
            +  +    N ++VKV M G    RK+DL++Y S+  L  AL  MF     E  + + + 
Sbjct: 97  QKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYN 156

Query: 141 --DFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
             ++   YED+DGDW+L  D+PWN FV S +RL+++
Sbjct: 157 GSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIM 182

[Close]
BLAST of Carg09338 vs. TrEMBL
Match: tr|A0A1S3BCX7|A0A1S3BCX7_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.0e-68
Identity = 130/173 (75.14%), Postives = 144/173 (83.24%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPKGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQP 97

Query: 72  PQTVENR--------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT 131
           PQT++NR        SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTALI MFT
Sbjct: 98  PQTIDNRRPIVADHQSNQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMFT 157

Query: 132 TSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           T+  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LVRKRNKE
Sbjct: 158 TN--KGMDNNDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVRKRNKE 208

[Close]
BLAST of Carg09338 vs. TrEMBL
Match: tr|A0A0A0LPM6|A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.7e-66
Identity = 128/172 (74.42%), Postives = 142/172 (82.56%), Query Frame = 0 

Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPRGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQP 97

Query: 72  PQTVENR-------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 131
           PQT+ENR       SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTAL+ MFTT
Sbjct: 98  PQTIENRRPAVADQSNQNGGRNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALLTMFTT 157

Query: 132 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LV  RNKE
Sbjct: 158 N--KGMDNSDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVGNRNKE 207

[Close]
BLAST of Carg09338 vs. TrEMBL
Match: tr|A0A1Q3CZV7|A0A1Q3CZV7_CEPFO (Auxin-responsive protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29139 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0 

Query: 13  QTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPP 72
           QTLPLL W+ +P DDD           TI K ++E+N +VGWPP+ +WRKK+L  H    
Sbjct: 62  QTLPLLLWSGQPNDDDDHKGQNTRTSYTINKNNKEENQAVGWPPVRSWRKKSLHPHQSGC 121

Query: 73  QTVEN-----RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNY 132
            T ++     ++   GG N+++VKVKMEG+AIARK+DLRLYHS+ +L  +LI MFT   Y
Sbjct: 122 GTDKHGMRMAKTENVGGSNTMYVKVKMEGMAIARKIDLRLYHSYQTLSNSLITMFT--KY 181

Query: 133 EAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
           +  D     +TL Y+D+DGDWLLA D+PW +FVE V+RLK++
Sbjct: 182 KKGDKDGARYTLTYQDKDGDWLLAGDVPWQAFVECVQRLKIV 221

[Close]
BLAST of Carg09338 vs. TrEMBL
Match: tr|A0A2P4JSW2|A0A2P4JSW2_QUESU (Auxin-responsive protein OS=Quercus suber OX=58331 GN=CFP56_10517 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 76/165 (46.06%), Postives = 109/165 (66.06%), Query Frame = 0 

Query: 9   GMSPQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQH 68
           G  PQ  PL+ W+ +P ++D          S + + + E+N  VGWPPI++W KK L Q 
Sbjct: 63  GGVPQIFPLMVWSGQPNEEDDRKGQNRKTPSIVNENEVEENHVVGWPPIKSWMKKQLHQQ 122

Query: 69  PQPPQT--VENR--SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 128
            Q  Q   V+N   + ++GG NSL+VKVKMEG+AIARK+DLRL+HS+ +L   LI+MF  
Sbjct: 123 QQQHQVGRVKNDGVAERSGGRNSLYVKVKMEGIAIARKIDLRLFHSYQALTNTLISMF-- 182

Query: 129 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
              + ID    ++TL Y+D++GDWLLA D+PW +F+ESV+RL +L
Sbjct: 183 DKEQKIDKNGVNYTLTYQDKEGDWLLAGDVPWQTFIESVQRLGIL 225

[Close]
BLAST of Carg09338 vs. TrEMBL
Match: tr|A0A1X9QDP9|A0A1X9QDP9_CAMSI (Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 0 

Query: 15  LPLLSWNDKP-KDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP-- 74
           L + SWN +P ++DDG     G+   TI K+DEE++  VGWPPI++WRKK + QH Q   
Sbjct: 71  LCVFSWNGQPNEEDDGRGERKGSSI-TIDKDDEEESHVVGWPPIKSWRKKLMHQHHQQGG 130

Query: 75  -PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAI 134
             + V++R+ + G  NS +VKV MEGV I RK+DLRLYHS+++L T LI+MF  + Y+  
Sbjct: 131 RTRIVKDRTVERGTSNSTYVKVNMEGVPIGRKIDLRLYHSYHTLTTTLISMF--AKYQDC 190

Query: 135 DNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKV 169
           D     +TL Y+D++GDWLLA D+PW +F+E+V RL++
Sbjct: 191 DKISERYTLTYQDKEGDWLLAGDVPWKTFIETVCRLEI 225

The following BLAST results are available for this feature:
BLAST of Carg09338 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022962174.11.5e-9098.79auxin-responsive protein IAA29-like [Cucurbita moschata][more]
XP_023546551.12.2e-8996.97auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo][more]
XP_022996632.16.9e-8395.60auxin-responsive protein IAA29-like [Cucurbita maxima][more]
XP_008445232.21.1e-6775.14PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo][more]
XP_004138851.12.6e-6674.42PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hyp... [more]
BLAST of Carg09338 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G04250.16.5e-1930.90AUX/IAA transcriptional regulator family protein[more]
AT5G65670.13.2e-1837.86indole-3-acetic acid inducible 9[more]
AT4G32280.12.7e-1746.99indole-3-acetic acid inducible 29[more]
AT4G28640.23.6e-1734.03indole-3-acetic acid inducible 11[more]
AT1G04240.11.0e-1637.19AUX/IAA transcriptional regulator family protein[more]
BLAST of Carg09338 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P13089|AUX28_SOYBN1.4e-1835.95Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1[more]
sp|P93830|IAA17_ARATH1.2e-1730.90Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=... [more]
sp|Q75GB1|IAA17_ORYSJ4.5e-1737.70Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17... [more]
sp|Q38827|IAA9_ARATH5.8e-1737.86Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1[more]
sp|O24542|AX22D_VIGRR9.9e-1732.69Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S... [more]
BLAST of Carg09338 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BCX7|A0A1S3BCX7_CUCME7.0e-6875.14Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1[more]
tr|A0A0A0LPM6|A0A0A0LPM6_CUCSA1.7e-6674.42Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1[more]
tr|A0A1Q3CZV7|A0A1Q3CZV7_CEPFO6.0e-3548.77Auxin-responsive protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29139 PE=... [more]
tr|A0A2P4JSW2|A0A2P4JSW2_QUESU4.8e-3246.06Auxin-responsive protein OS=Quercus suber OX=58331 GN=CFP56_10517 PE=3 SV=1[more]
tr|A0A1X9QDP9|A0A1X9QDP9_CAMSI4.8e-3248.10Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR003311AUX_IAA
IPR033389AUX/IAA_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09338-RACarg09338-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033389AUX/IAA domainPFAMPF02309AUX_IAAcoord: 39..169
e-value: 7.8E-34
score: 117.5
NoneNo IPR availableGENE3DG3DSA:3.10.20.90coord: 82..176
e-value: 1.4E-27
score: 97.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..53
NoneNo IPR availablePANTHERPTHR31734:SF44AUXIN-RESPONSIVE PROTEIN IAA29coord: 10..170
NoneNo IPR availableSUPERFAMILYSSF54277CAD & PB1 domainscoord: 80..168
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 10..170
IPR000270PB1 domainPROSITEPS51745PB1coord: 87..173
score: 23.655

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg09338Cla022332Watermelon (97103) v1carwmB0133
Carg09338Cla020976Watermelon (97103) v1carwmB0136
Carg09338Csa3G877650Cucumber (Chinese Long) v2carcuB0155
Carg09338Csa2G381840Cucumber (Chinese Long) v2carcuB0150
Carg09338MELO3C003701Melon (DHL92) v3.5.1carmeB0145
Carg09338MELO3C011268Melon (DHL92) v3.5.1carmeB0143
Carg09338ClCG08G013410Watermelon (Charleston Gray)carwcgB0137
Carg09338ClCG05G016850Watermelon (Charleston Gray)carwcgB0135
Carg09338CSPI02G23610Wild cucumber (PI 183967)carcpiB0155
Carg09338CSPI03G43920Wild cucumber (PI 183967)carcpiB0160
Carg09338Cucsa.310300Cucumber (Gy14) v1carcgyB0174
Carg09338Cucsa.162510Cucumber (Gy14) v1carcgyB0171
Carg09338CmaCh09G004540Cucurbita maxima (Rimu)carcmaB0182
Carg09338CmaCh12G003430Cucurbita maxima (Rimu)carcmaB0183
Carg09338CmaCh05G003780Cucurbita maxima (Rimu)carcmaB0189
Carg09338CmoCh09G004620Cucurbita moschata (Rifu)carcmoB0191
Carg09338CmoCh05G003790Cucurbita moschata (Rifu)carcmoB0196
Carg09338CmoCh12G002920Cucurbita moschata (Rifu)carcmoB0192
Carg09338Lsi04G021240Bottle gourd (USVL1VR-Ls)carlsiB126
Carg09338Lsi08G012110Bottle gourd (USVL1VR-Ls)carlsiB128
Carg09338Cp4.1LG06g03300Cucurbita pepo (Zucchini)carcpeB0204
Carg09338Cp4.1LG02g04230Cucurbita pepo (Zucchini)carcpeB0203
Carg09338Cp4.1LG11g03150Cucurbita pepo (Zucchini)carcpeB0199
Carg09338CsGy2G023370Cucumber (Gy14) v2carcgybB0148
Carg09338CsGy3G041410Cucumber (Gy14) v2carcgybB0153
Carg09338MELO3C003701.2Melon (DHL92) v3.6.1carmedB0149
Carg09338MELO3C011268.2Melon (DHL92) v3.6.1carmedB0147
Carg09338CsaV3_3G046370Cucumber (Chinese Long) v3carcucB0163
Carg09338CsaV3_2G032150Cucumber (Chinese Long) v3carcucB0159
Carg09338Cla97C05G097940Watermelon (97103) v2carwmbB0148
Carg09338Cla97C08G156790Watermelon (97103) v2carwmbB0149
Carg09338Bhi04G000778Wax gourdcarwgoB0176
Carg09338Bhi09G001925Wax gourdcarwgoB0182
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg09338Carg02880Silver-seed gourdcarcarB163
Carg09338Carg00457Silver-seed gourdcarcarB165
Carg09338Carg03932Silver-seed gourdcarcarB168
The following block(s) are covering this gene:
GeneOrganismBlock
Carg09338Cucurbita maxima (Rimu)carcmaB0186
Carg09338Cucurbita pepo (Zucchini)carcpeB0205
Carg09338Watermelon (Charleston Gray)carwcgB0136