Carg03932 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03932
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_011 : 853936 .. 854291 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATGTGAGTCCATAGATACCATATTTGACATTCTATTATACTCAAATATTCACATTAAAAGTCTTATGATACAGAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

mRNA sequence

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

Coding sequence (CDS)

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

Protein sequence

MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

Homology

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BLAST of Carg03932 vs. NCBI nr
Match: XP_023537127.1 (uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 1.8e-45
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRS 60
          MELQLGLSLPLHHHPLHGAPTNCIKHP VTNELPN SPLLSWNDKPKDEDDPDRP++TRS
Sbjct: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPRVTNELPNTSPLLSWNDKPKDEDDPDRPQQTRS 60

Query: 61 CTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
          CTFQI DEEKNH VGWPPIGSWRKKVLDQL HPP
Sbjct: 61 CTFQI-DEEKNHGVGWPPIGSWRKKVLDQLPHPP 93

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BLAST of Carg03932 vs. NCBI nr
Match: XP_004138851.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hypothetical protein Csa_2G381840 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 60/98 (61.22%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR
Sbjct: 1  MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQPP 98

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BLAST of Carg03932 vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+
Sbjct: 1  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK     T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQPP 98

[Close]

BLAST of Carg03932 vs. NCBI nr
Match: XP_022962174.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 7.5e-20
Identity = 53/94 (56.38%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRS 60
          MELQLGLSLPLH++          +HP + NELP   PLLSWNDKPKD+D    P  T  
Sbjct: 1  MELQLGLSLPLHNY--------AFEHPRIGNELPQTLPLLSWNDKPKDDDGSPHPEGTHF 60

Query: 61 CTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T Q  DEEKN  VGWPPI +WRKK L Q   PP
Sbjct: 61 STIQKEDEEKNPSVGWPPIETWRKKALLQHPQPP 86

[Close]

BLAST of Carg03932 vs. NCBI nr
Match: XP_023546551.1 (auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 25  KHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRK 84
           +HP + NELP   PLLSWNDKPKD+DD      T   T Q  DEEKN  VGWPPI +WRK
Sbjct: 74  EHPRIGNELPRTLPLLSWNDKPKDDDDSPHTGGTHFSTIQKDDEEKNPSVGWPPIETWRK 133

Query: 85  KVLDQLTHPP 95
           K L Q   PP
Sbjct: 134 KALLQHPQPP 143

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BLAST of Carg03932 vs. TrEMBL
Match: tr|A0A1S3BCX7|A0A1S3BCX7_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+
Sbjct: 1  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK     T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQPP 98

[Close]

BLAST of Carg03932 vs. TrEMBL
Match: tr|A0A0A0LPM6|A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 60/98 (61.22%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR
Sbjct: 1  MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQPP 98

[Close]

BLAST of Carg03932 vs. TrEMBL
Match: tr|A0A1X9QDP9|A0A1X9QDP9_CAMSI (Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MELQLGLSLPLHHHPLHGAPTN------------------CIKHPHVTN----------- 60
           MELQLGL+LP  H+P+ G   N                  C+ +  + N           
Sbjct: 5   MELQLGLALPT-HNPVKGIDLNQNGFDSKEMGGWWNDNECCLGNKFLGNKKRGFDEAFED 64

Query: 61  --ELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQ 90
             E      + SWN +P +EDD    R+  S T    DEE++H VGWPPI SWRKK++ Q
Sbjct: 65  GGERNGKLCVFSWNGQPNEEDDGRGERKGSSITIDKDDEEESHVVGWPPIKSWRKKLMHQ 123

[Close]

BLAST of Carg03932 vs. TrEMBL
Match: tr|A0A1U7ZNJ0|A0A1U7ZNJ0_NELNU (Auxin-responsive protein OS=Nelumbo nucifera OX=4432 GN=LOC104592479 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 38  PLLSWNDKPKDEDDPDRPRETRSCTFQIR-DEEKNHRVGWPPIGSWRKKVLDQ 90
           PLLSWNDKP D+DD        SC    + +EE N  VGWPPI SWRKK+  Q
Sbjct: 69  PLLSWNDKPNDDDDYKGRDRGSSCFLDNKVEEEANSIVGWPPINSWRKKLHHQ 121

[Close]

BLAST of Carg03932 vs. TrEMBL
Match: tr|A0A1S3X8F5|A0A1S3X8F5_TOBAC (Auxin-responsive protein OS=Nicotiana tabacum OX=4097 GN=LOC107762242 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 38  PLLSWNDKPKDEDDPDRP--RETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTH 93
           PLL WN +P DE++ D P  R   +C  +I++E  N  VGWPPI SWRKK ++ + H
Sbjct: 66  PLLIWNGQPNDEEEDDHPKRRTFEACNPEIKEE--NQLVGWPPIKSWRKKQINGINH 120

The following BLAST results are available for this feature:

BLAST of Carg03932 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537127.1	1.8e-45	92.55	uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo]	[more]
XP_004138851.1	3.3e-23	61.22	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hyp...	[more]
XP_008445232.2	3.3e-23	59.18	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
XP_022962174.1	7.5e-20	56.38	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
XP_023546551.1	3.6e-14	58.57	auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg03932 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03932 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03932 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCX7\|A0A1S3BCX7_CUCME	2.2e-23	59.18	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1	[more]
tr\|A0A0A0LPM6\|A0A0A0LPM6_CUCSA	2.2e-23	61.22	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1	[more]
tr\|A0A1X9QDP9\|A0A1X9QDP9_CAMSI	4.8e-07	35.00	Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A1U7ZNJ0\|A0A1U7ZNJ0_NELNU	9.1e-06	54.72	Auxin-responsive protein OS=Nelumbo nucifera OX=4432 GN=LOC104592479 PE=3 SV=1	[more]
tr\|A0A1S3X8F5\|A0A1S3X8F5_TOBAC	9.1e-06	47.37	Auxin-responsive protein OS=Nicotiana tabacum OX=4097 GN=LOC107762242 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg03932-RA	Carg03932-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg03932	Cucsa.162510	Cucumber (Gy14) v1	carcgyB1091
Carg03932	CmaCh12G003430	Cucurbita maxima (Rimu)	carcmaB1349
Carg03932	CmoCh12G002920	Cucurbita moschata (Rifu)	carcmoB1310

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg03932	Carg09338	Silver-seed gourd	carcarB168

The following block(s) are covering this gene:


Gene	Organism	Block
Carg03932	Silver-seed gourd	carcarB239
Carg03932	Silver-seed gourd	carcarB558
Carg03932	Silver-seed gourd	carcarB572
Carg03932	Cucumber (Gy14) v2	carcgybB0960
Carg03932	Cucurbita maxima (Rimu)	carcmaB1353
Carg03932	Cucurbita maxima (Rimu)	carcmaB1357
Carg03932	Cucurbita moschata (Rifu)	carcmoB1313
Carg03932	Cucurbita moschata (Rifu)	carcmoB1315
Carg03932	Cucurbita moschata (Rifu)	carcmoB1319
Carg03932	Cucurbita pepo (Zucchini)	carcpeB1352
Carg03932	Cucurbita pepo (Zucchini)	carcpeB1356
Carg03932	Cucurbita pepo (Zucchini)	carcpeB1363
Carg03932	Cucurbita pepo (Zucchini)	carcpeB1364
Carg03932	Cucurbita pepo (Zucchini)	carcpeB1368
Carg03932	Wild cucumber (PI 183967)	carcpiB1010
Carg03932	Cucumber (Chinese Long) v2	carcuB0987
Carg03932	Cucumber (Chinese Long) v3	carcucB1015
Carg03932	Bottle gourd (USVL1VR-Ls)	carlsiB893
Carg03932	Bottle gourd (USVL1VR-Ls)	carlsiB898
Carg03932	Melon (DHL92) v3.5.1	carmeB0955
Carg03932	Melon (DHL92) v3.6.1	carmedB0961
Carg03932	Watermelon (Charleston Gray)	carwcgB0957
Carg03932	Watermelon (Charleston Gray)	carwcgB0958
Carg03932	Watermelon (Charleston Gray)	carwcgB0951
Carg03932	Watermelon (Charleston Gray)	carwcgB0955
Carg03932	Watermelon (97103) v1	carwmB0980
Carg03932	Watermelon (97103) v1	carwmB0978
Carg03932	Watermelon (97103) v2	carwmbB1033
Carg03932	Watermelon (97103) v2	carwmbB1034
Carg03932	Wax gourd	carwgoB1145