Carg03932-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg03932-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_011 : 853936 .. 854291 (-)
Sequence length	285

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATGTGAGTCCATAGATACCATATTTGACATTCTATTATACTCAAATATTCACATTAAAAGTCTTATGATACAGAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

mRNA sequence

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

Coding sequence (CDS)

ATGGAGCTTCAACTTGGCCTATCTCTTCCCCTTCACCACCACCCCCTCCATGGCGCTCCCACAAACTGCATCAAACATCCACACGTCACAAACGAGCTGCCCAACGCTTCGCCTTTGCTATCATGGAATGATAAGCCTAAGGACGAAGACGATCCTGACCGTCCACGAGAGACACGCTCTTGCACCTTTCAAATAAGAGATGAAGAGAAGAACCACAGAGTCGGGTGGCCACCAATTGGGTCATGGAGGAAGAAGGTCCTTGACCAGCTAACTCACCCGCCATAG

Protein sequence

MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP

Homology

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BLAST of Carg03932-RA vs. NCBI nr
Match: XP_023537127.1 (uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 191.0 bits (484), Expect = 1.8e-45
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRS 60
          MELQLGLSLPLHHHPLHGAPTNCIKHP VTNELPN SPLLSWNDKPKDEDDPDRP++TRS
Sbjct: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPRVTNELPNTSPLLSWNDKPKDEDDPDRPQQTRS 60

Query: 61 CTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
          CTFQI DEEKNH VGWPPIGSWRKKVLDQL HPP
Sbjct: 61 CTFQI-DEEKNHGVGWPPIGSWRKKVLDQLPHPP 93

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BLAST of Carg03932-RA vs. NCBI nr
Match: XP_004138851.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hypothetical protein Csa_2G381840 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 60/98 (61.22%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR
Sbjct: 1  MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQPP 98

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BLAST of Carg03932-RA vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+
Sbjct: 1  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK     T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQPP 98

[Close]

BLAST of Carg03932-RA vs. NCBI nr
Match: XP_022962174.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 105.9 bits (263), Expect = 7.5e-20
Identity = 53/94 (56.38%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHPLHGAPTNCIKHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRS 60
          MELQLGLSLPLH++          +HP + NELP   PLLSWNDKPKD+D    P  T  
Sbjct: 1  MELQLGLSLPLHNY--------AFEHPRIGNELPQTLPLLSWNDKPKDDDGSPHPEGTHF 60

Query: 61 CTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T Q  DEEKN  VGWPPI +WRKK L Q   PP
Sbjct: 61 STIQKEDEEKNPSVGWPPIETWRKKALLQHPQPP 86

[Close]

BLAST of Carg03932-RA vs. NCBI nr
Match: XP_023546551.1 (auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 25  KHPHVTNELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRK 84
           +HP + NELP   PLLSWNDKPKD+DD      T   T Q  DEEKN  VGWPPI +WRK
Sbjct: 74  EHPRIGNELPRTLPLLSWNDKPKDDDDSPHTGGTHFSTIQKDDEEKNPSVGWPPIETWRK 133

Query: 85  KVLDQLTHPP 95
           K L Q   PP
Sbjct: 134 KALLQHPQPP 143

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BLAST of Carg03932-RA vs. TrEMBL
Match: tr|A0A1S3BCX7|A0A1S3BCX7_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 58/98 (59.18%), Postives = 64/98 (65.31%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH+HP +H  P    +H     + NELP   PLLSWNDKPKDEDDP  P+
Sbjct: 1  MELQLGLSLPLHNHPNIHCKPAGGFEHHPLFVIENELPQTLPLLSWNDKPKDEDDPHHPK 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK     T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQPP 98

[Close]

BLAST of Carg03932-RA vs. TrEMBL
Match: tr|A0A0A0LPM6|A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.2e-23
Identity = 60/98 (61.22%), Postives = 63/98 (64.29%), Query Frame = 0


Query: 1  MELQLGLSLPLHHHP-LHGAPTNCIKHPH---VTNELPNASPLLSWNDKPKDEDDPDRPR 60
          MELQLGLSLPLH HP +H  P       H   + NELP   PLLSWNDKPKDEDDP  PR
Sbjct: 1  MELQLGLSLPLHSHPNIHCKPAGGRFGDHSFILENELPQTLPLLSWNDKPKDEDDPHHPR 60

Query: 61 ETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTHPP 95
           T  C  Q +DEEK   VGWPPI SWRKK  D  T PP
Sbjct: 61 GTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQPP 98

[Close]

BLAST of Carg03932-RA vs. TrEMBL
Match: tr|A0A1X9QDP9|A0A1X9QDP9_CAMSI (Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.8e-07
Identity = 42/120 (35.00%), Postives = 56/120 (46.67%), Query Frame = 0


Query: 1   MELQLGLSLPLHHHPLHGAPTN------------------CIKHPHVTN----------- 60
           MELQLGL+LP  H+P+ G   N                  C+ +  + N           
Sbjct: 5   MELQLGLALPT-HNPVKGIDLNQNGFDSKEMGGWWNDNECCLGNKFLGNKKRGFDEAFED 64

Query: 61  --ELPNASPLLSWNDKPKDEDDPDRPRETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQ 90
             E      + SWN +P +EDD    R+  S T    DEE++H VGWPPI SWRKK++ Q
Sbjct: 65  GGERNGKLCVFSWNGQPNEEDDGRGERKGSSITIDKDDEEESHVVGWPPIKSWRKKLMHQ 123

[Close]

BLAST of Carg03932-RA vs. TrEMBL
Match: tr|A0A1U7ZNJ0|A0A1U7ZNJ0_NELNU (Auxin-responsive protein OS=Nelumbo nucifera OX=4432 GN=LOC104592479 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 29/53 (54.72%), Postives = 33/53 (62.26%), Query Frame = 0


Query: 38  PLLSWNDKPKDEDDPDRPRETRSCTFQIR-DEEKNHRVGWPPIGSWRKKVLDQ 90
           PLLSWNDKP D+DD        SC    + +EE N  VGWPPI SWRKK+  Q
Sbjct: 69  PLLSWNDKPNDDDDYKGRDRGSSCFLDNKVEEEANSIVGWPPINSWRKKLHHQ 121

[Close]

BLAST of Carg03932-RA vs. TrEMBL
Match: tr|A0A1S3X8F5|A0A1S3X8F5_TOBAC (Auxin-responsive protein OS=Nicotiana tabacum OX=4097 GN=LOC107762242 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 27/57 (47.37%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 38  PLLSWNDKPKDEDDPDRP--RETRSCTFQIRDEEKNHRVGWPPIGSWRKKVLDQLTH 93
           PLL WN +P DE++ D P  R   +C  +I++E  N  VGWPPI SWRKK ++ + H
Sbjct: 66  PLLIWNGQPNDEEEDDHPKRRTFEACNPEIKEE--NQLVGWPPIKSWRKKQINGINH 120

The following BLAST results are available for this feature:

BLAST of Carg03932-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537127.1	1.8e-45	92.55	uncharacterized protein LOC111798299 [Cucurbita pepo subsp. pepo]	[more]
XP_004138851.1	3.3e-23	61.22	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hyp...	[more]
XP_008445232.2	3.3e-23	59.18	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
XP_022962174.1	7.5e-20	56.38	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
XP_023546551.1	3.6e-14	58.57	auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg03932-RA vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg03932-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg03932-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCX7\|A0A1S3BCX7_CUCME	2.2e-23	59.18	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1	[more]
tr\|A0A0A0LPM6\|A0A0A0LPM6_CUCSA	2.2e-23	61.22	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1	[more]
tr\|A0A1X9QDP9\|A0A1X9QDP9_CAMSI	4.8e-07	35.00	Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]
tr\|A0A1U7ZNJ0\|A0A1U7ZNJ0_NELNU	9.1e-06	54.72	Auxin-responsive protein OS=Nelumbo nucifera OX=4432 GN=LOC104592479 PE=3 SV=1	[more]
tr\|A0A1S3X8F5\|A0A1S3X8F5_TOBAC	9.1e-06	47.37	Auxin-responsive protein OS=Nicotiana tabacum OX=4097 GN=LOC107762242 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg03932	Carg03932	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03932-RA.CDS.2	Carg03932-RA.CDS.2	CDS
Carg03932-RA.CDS.1	Carg03932-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg03932-RA.exon.2	Carg03932-RA.exon.2	exon
Carg03932-RA.exon.1	Carg03932-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg03932-RA	Carg03932-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..74