Carg09338-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg09338-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Auxin-responsive protein
Location	Cucurbita_argyrosperma_scaffold_018 : 782803 .. 783856 (-)
Sequence length	782

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTATCACATTTGCCATCCTTTTTCCTGACTCAACCTGCTCCCCTGCTTTTTGTTTTCCCTATATATATCACTCATTTCTTATGCCTCTTCCTTTAAGCTTCTCTTGAAAACCTGAAACTGAAATGGAGCTCCAACTTGGCCTCTCCCTTCCCCTCCATAACTATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAGTCAGTCCAAACTAATACAACTCTTATGATACTTTTAAATTGCTGTTATTAATTATGTCACAGTTTCATATGATGCAGAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTGTAAATTATCCACTTTTTCACATTCATTCCATCAACCCCACCAGAAAAATCATAGTATTTATCCATAAATTTGAATTCTTTCTGTAACAGATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAAGTGCGTTCTTAAGTTCCATTCACTCTCTTTTTCAGGGGAAAAAGACAGCAAATGGCTAAATTCTAATTTATTCTCTCTGATGTTTGCTTTGTTTTTTGCTGCAGCTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAAAGTTTGCATATACGACACAAATTATTTCTGAATCATATTCCACATGTAATCATATATAATATATATTAATAGCATCAATTATTTAG

mRNA sequence

TGTGTATCACATTTGCCATCCTTTTTCCTGACTCAACCTGCTCCCCTGCTTTTTGTTTTCCCTATATATATCACTCATTTCTTATGCCTCTTCCTTTAAGCTTCTCTTGAAAACCTGAAACTGAAATGGAGCTCCAACTTGGCCTCTCCCTTCCCCTCCATAACTATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAACTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAAAGTTTGCATATACGACACAAATTATTTCTGAATCATATTCCACATGTAATCATATATAATATATATTAATAGCATCAATTATTTAG

Coding sequence (CDS)

ATGCTCTTGAACATCCACGCATTGGGAATGAGCCCCCAAACTTTGCCTCTGCTGTCATGGAATGATAAGCCAAAGGATGATGACGGTTCTCCCCACGCCGGAGGAACACACTTTTCCACCATTCAAAAAGAAGATGAAGAGAAGAACCCATCAGTCGGGTGGCCACCGATTGAGACATGGAGGAAGAAGGCGCTTCTCCAGCACCCTCAACCGCCGCAGACGGTGGAGAATCGCAGTAACCAAAATGGCGGACCAAATTCATTGTTCGTGAAAGTGAAGATGGAGGGGGTAGCAATAGCAAGGAAACTCGATCTAAGGCTCTATCACTCTCATAACTCCCTCAAAACTGCCCTCATCGCCATGTTCACCACATCTAATTATGAGGCAATTGATAACAAGTGTTGGGATTTTACTCTGATCTATGAAGACGAAGATGGGGACTGGCTGCTTGCAGAGGATCTTCCATGGAACTCCTTCGTCGAGTCTGTACGGCGCCTCAAGGTTCTGGTTCGAAAAAGAAACAAAGAATAA

Protein sequence

MLLNIHALGMSPQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE

Homology

[Close]

BLAST of Carg09338-RA vs. NCBI nr
Match: XP_022962174.1 (auxin-responsive protein IAA29-like [Cucurbita moschata])

HSP 1 Score: 341.7 bits (875), Expect = 1.5e-90
Identity = 163/165 (98.79%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKDDDGSPH  GTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP
Sbjct: 26  PQTLPLLSWNDKPKDDDGSPHPEGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 85

Query: 72  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 131
           PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID
Sbjct: 86  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 145

Query: 132 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 146 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 190

[Close]

BLAST of Carg09338-RA vs. NCBI nr
Match: XP_023546551.1 (auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 337.8 bits (865), Expect = 2.2e-89
Identity = 160/165 (96.97%), Postives = 163/165 (98.79%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           P+TLPLLSWNDKPKDDD SPH GGTHFSTIQK+DEEKNPSVGWPPIETWRKKALLQHPQP
Sbjct: 83  PRTLPLLSWNDKPKDDDDSPHTGGTHFSTIQKDDEEKNPSVGWPPIETWRKKALLQHPQP 142

Query: 72  PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 131
           PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID
Sbjct: 143 PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAID 202

Query: 132 NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +KCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 203 SKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 247

[Close]

BLAST of Carg09338-RA vs. NCBI nr
Match: XP_022996632.1 (auxin-responsive protein IAA29-like [Cucurbita maxima])

HSP 1 Score: 316.2 bits (809), Expect = 6.9e-83
Identity = 152/159 (95.60%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPPQTVEN 77
           LSWNDKPKDDD SPH GGTHFSTIQKED+EKNPSVGWPPIETWRKKALLQHPQPP  +EN
Sbjct: 25  LSWNDKPKDDDDSPHPGGTHFSTIQKEDDEKNPSVGWPPIETWRKKALLQHPQPP--LEN 84

Query: 78  RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDF 137
           RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT SNYEAIDNKCWDF
Sbjct: 85  RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTASNYEAIDNKCWDF 144

Query: 138 TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE
Sbjct: 145 TLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 181

[Close]

BLAST of Carg09338-RA vs. NCBI nr
Match: XP_008445232.2 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo])

HSP 1 Score: 265.8 bits (678), Expect = 1.1e-67
Identity = 130/173 (75.14%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPKGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQP 97

Query: 72  PQTVENR--------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT 131
           PQT++NR        SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTALI MFT
Sbjct: 98  PQTIDNRRPIVADHQSNQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMFT 157

Query: 132 TSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           T+  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LVRKRNKE
Sbjct: 158 TN--KGMDNNDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVRKRNKE 208

[Close]

BLAST of Carg09338-RA vs. NCBI nr
Match: XP_004138851.1 (PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hypothetical protein Csa_2G381840 [Cucumis sativus])

HSP 1 Score: 261.2 bits (666), Expect = 2.6e-66
Identity = 128/172 (74.42%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPRGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQP 97

Query: 72  PQTVENR-------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 131
           PQT+ENR       SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTAL+ MFTT
Sbjct: 98  PQTIENRRPAVADQSNQNGGRNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALLTMFTT 157

Query: 132 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LV  RNKE
Sbjct: 158 N--KGMDNSDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVGNRNKE 207

[Close]

BLAST of Carg09338-RA vs. TAIR10
Match: AT1G04250.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 91.3 bits (225), Expect = 6.5e-19
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS--------VGWPPIETWRKKALLQHP 77
           L+ N++P + +GS       F + +K    K+P+        VGWPP+ ++RK  ++   
Sbjct: 42  LNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMV--- 101

Query: 78  QPPQTVENRSNQNGGPN-SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT---- 137
                  +    +GGP  + FVKV M+G    RK+DLR+Y S++ L  AL  MF++    
Sbjct: 102 -------SCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMG 161

Query: 138 ------------SNYEAID-NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
                       +  + +D    WD+   YED+DGDW+L  D+PW  FV++ +RL+++
Sbjct: 162 KHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

[Close]

BLAST of Carg09338-RA vs. TAIR10
Match: AT5G65670.1 (indole-3-acetic acid inducible 9)

HSP 1 Score: 89.0 bits (219), Expect = 3.2e-18
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNS--LFVKVKMEGVAIARKLDLRLYH 111
           VGWPP+ ++RK  L        T +N    +G P S  LFVKV M+G    RK+DLR Y 
Sbjct: 185 VGWPPVRSYRKNTL------ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 244

Query: 112 SHNSLKTALIAMFTT-------SNYEA-------------IDNKCWDFTLIYEDEDGDWL 170
           ++  L +AL  MFTT       SN  A             ++ K  D+ L YED+DGDW+
Sbjct: 245 NYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGK--DYVLTYEDKDGDWM 304

[Close]

BLAST of Carg09338-RA vs. TAIR10
Match: AT4G32280.1 (indole-3-acetic acid inducible 29)

HSP 1 Score: 85.9 bits (211), Expect = 2.7e-17
Identity = 39/83 (46.99%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 87  SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCWDFTLIYEDEDG 146
           S++VKVKM+GVAIARK+D++L++S+ SL  +LI MFT   YE  D +  ++T  ++ ++G
Sbjct: 159 SMYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMFT--EYEDCDREDTNYTFTFQGKEG 218

Query: 147 DWLLAEDLPWNSFVESVRRLKVL 170
           DWLL  D+ W  F ESV R+ ++
Sbjct: 219 DWLLRGDVTWKIFAESVHRISII 239

[Close]

BLAST of Carg09338-RA vs. TAIR10
Match: AT4G28640.2 (indole-3-acetic acid inducible 11)

HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17
Identity = 49/144 (34.03%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 52  VGWPPIETWRKKALLQHPQPPQTVE-----------NRSNQNGGPNSLFVKVKMEGVAIA 111
           VGWPPI T+R  +++   +   T +           NRS+     NS+FVKV M+G+ I 
Sbjct: 90  VGWPPIRTYRMNSMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGIPIG 149

Query: 112 RKLDLRLYHSHNSLKTALIAMF-----------TTSNYEA----IDNKCWDFTLIYEDED 170
           RK+DL  +  + SL   L  MF           T  + E     + +      L YED++
Sbjct: 150 RKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKILPDGSSGLVLTYEDKE 209

[Close]

BLAST of Carg09338-RA vs. TAIR10
Match: AT1G04240.1 (AUX/IAA transcriptional regulator family protein)

HSP 1 Score: 84.0 bits (206), Expect = 1.0e-16
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0


Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSH 111
           VGWPP+ ++RK  +       Q+ +N S   G    ++VKV M+G    RK+DL  Y  +
Sbjct: 66  VGWPPVRSYRKNNI-------QSKKNESEHEG--QGIYVKVSMDGAPYLRKIDLSCYKGY 125

Query: 112 NSLKTALIAMFTTS---NYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKV 170
           + L  AL  MF  S    +E    K  DF   YED+DGDW+L  D+PW  F+ + +RL++
Sbjct: 126 SELLKALEVMFKFSVGEYFERDGYKGSDFVPTYEDKDGDWMLIGDVPWEMFICTCKRLRI 177

[Close]

BLAST of Carg09338-RA vs. Swiss-Prot
Match: sp|P13089|AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-18
Identity = 55/153 (35.95%), Postives = 81/153 (52.94%), Query Frame = 0


Query: 40  TIQKEDEEKNPS----VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKME 99
           T+   D  K P+    VGWPP+ ++RK  L       ++V   S +N  PN+ FVKV M+
Sbjct: 76  TLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQ----KSVGEESEKNSSPNASFVKVSMD 135

Query: 100 GVAIARKLDLRLYHSHNSLKTAL---IAMFTTSNYEAIDNKCW-------------DFTL 159
           G    RK+DL++Y S+  L  +L    + FT  N E+   K +             D+  
Sbjct: 136 GAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGMKDFMNESKLNDLLNSSDYVP 195

Query: 160 IYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRK 173
            YED+DGDW+L  D+PW  FVES +RL+++  K
Sbjct: 196 TYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGK 224

[Close]

BLAST of Carg09338-RA vs. Swiss-Prot
Match: sp|P93830|IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17
Identity = 55/178 (30.90%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 18  LSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS--------VGWPPIETWRKKALLQHP 77
           L+ N++P + +GS       F + +K    K+P+        VGWPP+ ++RK  ++   
Sbjct: 42  LNLNNEPANKEGSTTHDVVTFDSKEKSACPKDPAKPPAKAQVVGWPPVRSYRKNVMV--- 101

Query: 78  QPPQTVENRSNQNGGPN-SLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT---- 137
                  +    +GGP  + FVKV M+G    RK+DLR+Y S++ L  AL  MF++    
Sbjct: 102 -------SCQKSSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMG 161

Query: 138 ------------SNYEAID-NKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
                       +  + +D    WD+   YED+DGDW+L  D+PW  FV++ +RL+++
Sbjct: 162 KHGGEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLM 209

[Close]

BLAST of Carg09338-RA vs. Swiss-Prot
Match: sp|Q75GB1|IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 4.5e-17
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSH 111
           VGWPPI ++RK  +  +       +  + Q  G   L+VKV M+G    RK+DL+ Y ++
Sbjct: 118 VGWPPIRSYRKNTMATNQLKSSKEDAEAKQ--GQGFLYVKVSMDGAPYLRKVDLKTYKNY 177

Query: 112 NSLKTALIAMF----TTSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLK 170
             L TAL  MF    T  +  +   K  ++ L YED+DGDW+L  D+PW  F  S RRL+
Sbjct: 178 KDLSTALEKMFIGFTTGKDGLSESRKDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLR 237

[Close]

BLAST of Carg09338-RA vs. Swiss-Prot
Match: sp|Q38827|IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.8e-17
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 52  VGWPPIETWRKKALLQHPQPPQTVENRSNQNGGPNS--LFVKVKMEGVAIARKLDLRLYH 111
           VGWPP+ ++RK  L        T +N    +G P S  LFVKV M+G    RK+DLR Y 
Sbjct: 185 VGWPPVRSYRKNTL------ATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYT 244

Query: 112 SHNSLKTALIAMFTT-------SNYEA-------------IDNKCWDFTLIYEDEDGDWL 170
           ++  L +AL  MFTT       SN  A             ++ K  D+ L YED+DGDW+
Sbjct: 245 NYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGK--DYVLTYEDKDGDWM 304

[Close]

BLAST of Carg09338-RA vs. Swiss-Prot
Match: sp|O24542|AX22D_VIGRR (Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.9e-17
Identity = 51/156 (32.69%), Postives = 81/156 (51.92%), Query Frame = 0


Query: 21  NDKPKDDDGSPHAGGTHFSTIQKEDEEKNPS----VGWPPIETWRKKALLQHPQPPQTVE 80
           ++K    + S     ++ S + KED    P+    VGWPPI ++RK            V+
Sbjct: 37  SNKRSSPEASDEESISNGSDVTKEDNVVPPAKAQVVGWPPIRSYRK----------NNVQ 96

Query: 81  NRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAIDNKCW- 140
            +  +    N ++VKV M G    RK+DL++Y S+  L  AL  MF     E  + + + 
Sbjct: 97  QKKEEESEGNGMYVKVSMAGAPYLRKIDLKVYKSYPELLKALENMFKCIFGEYSEREGYN 156

Query: 141 --DFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
             ++   YED+DGDW+L  D+PWN FV S +RL+++
Sbjct: 157 GSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIM 182

[Close]

BLAST of Carg09338-RA vs. TrEMBL
Match: tr|A0A1S3BCX7|A0A1S3BCX7_CUCME (Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 7.0e-68
Identity = 130/173 (75.14%), Postives = 144/173 (83.24%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPKGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFHWHTQP 97

Query: 72  PQTVENR--------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFT 131
           PQT++NR        SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTALI MFT
Sbjct: 98  PQTIDNRRPIVADHQSNQNGGQNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALITMFT 157

Query: 132 TSNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           T+  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LVRKRNKE
Sbjct: 158 TN--KGMDNNDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVRKRNKE 208

[Close]

BLAST of Carg09338-RA vs. TrEMBL
Match: tr|A0A0A0LPM6|A0A0A0LPM6_CUCSA (Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.7e-66
Identity = 128/172 (74.42%), Postives = 142/172 (82.56%), Query Frame = 0


Query: 12  PQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP 71
           PQTLPLLSWNDKPKD+D   H  GTHF  IQK+DEEK  +VGWPPIE+WRKKA   H QP
Sbjct: 38  PQTLPLLSWNDKPKDEDDPHHPRGTHFCNIQKKDEEKKQAVGWPPIESWRKKAFDWHTQP 97

Query: 72  PQTVENR-------SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 131
           PQT+ENR       SNQNGG NSLFVKVKMEGVAIARKLDL+LYHSH+SLKTAL+ MFTT
Sbjct: 98  PQTIENRRPAVADQSNQNGGRNSLFVKVKMEGVAIARKLDLKLYHSHHSLKTALLTMFTT 157

Query: 132 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVLVRKRNKE 177
           +  + +DN  WDFTLIYEDEDGDW+LAEDLPWNSFVES +RLK+LV  RNKE
Sbjct: 158 N--KGMDNSDWDFTLIYEDEDGDWMLAEDLPWNSFVESAQRLKILVGNRNKE 207

[Close]

BLAST of Carg09338-RA vs. TrEMBL
Match: tr|A0A1Q3CZV7|A0A1Q3CZV7_CEPFO (Auxin-responsive protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29139 PE=3 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.0e-35
Identity = 79/162 (48.77%), Postives = 109/162 (67.28%), Query Frame = 0


Query: 13  QTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQPP 72
           QTLPLL W+ +P DDD           TI K ++E+N +VGWPP+ +WRKK+L  H    
Sbjct: 62  QTLPLLLWSGQPNDDDDHKGQNTRTSYTINKNNKEENQAVGWPPVRSWRKKSLHPHQSGC 121

Query: 73  QTVEN-----RSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNY 132
            T ++     ++   GG N+++VKVKMEG+AIARK+DLRLYHS+ +L  +LI MFT   Y
Sbjct: 122 GTDKHGMRMAKTENVGGSNTMYVKVKMEGMAIARKIDLRLYHSYQTLSNSLITMFT--KY 181

Query: 133 EAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
           +  D     +TL Y+D+DGDWLLA D+PW +FVE V+RLK++
Sbjct: 182 KKGDKDGARYTLTYQDKDGDWLLAGDVPWQAFVECVQRLKIV 221

[Close]

BLAST of Carg09338-RA vs. TrEMBL
Match: tr|A0A2P4JSW2|A0A2P4JSW2_QUESU (Auxin-responsive protein OS=Quercus suber OX=58331 GN=CFP56_10517 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 76/165 (46.06%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 9   GMSPQTLPLLSWNDKPKDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQH 68
           G  PQ  PL+ W+ +P ++D          S + + + E+N  VGWPPI++W KK L Q 
Sbjct: 63  GGVPQIFPLMVWSGQPNEEDDRKGQNRKTPSIVNENEVEENHVVGWPPIKSWMKKQLHQQ 122

Query: 69  PQPPQT--VENR--SNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTT 128
            Q  Q   V+N   + ++GG NSL+VKVKMEG+AIARK+DLRL+HS+ +L   LI+MF  
Sbjct: 123 QQQHQVGRVKNDGVAERSGGRNSLYVKVKMEGIAIARKIDLRLFHSYQALTNTLISMF-- 182

Query: 129 SNYEAIDNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKVL 170
              + ID    ++TL Y+D++GDWLLA D+PW +F+ESV+RL +L
Sbjct: 183 DKEQKIDKNGVNYTLTYQDKEGDWLLAGDVPWQTFIESVQRLGIL 225

[Close]

BLAST of Carg09338-RA vs. TrEMBL
Match: tr|A0A1X9QDP9|A0A1X9QDP9_CAMSI (Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.8e-32
Identity = 76/158 (48.10%), Postives = 110/158 (69.62%), Query Frame = 0


Query: 15  LPLLSWNDKP-KDDDGSPHAGGTHFSTIQKEDEEKNPSVGWPPIETWRKKALLQHPQP-- 74
           L + SWN +P ++DDG     G+   TI K+DEE++  VGWPPI++WRKK + QH Q   
Sbjct: 71  LCVFSWNGQPNEEDDGRGERKGSSI-TIDKDDEEESHVVGWPPIKSWRKKLMHQHHQQGG 130

Query: 75  -PQTVENRSNQNGGPNSLFVKVKMEGVAIARKLDLRLYHSHNSLKTALIAMFTTSNYEAI 134
             + V++R+ + G  NS +VKV MEGV I RK+DLRLYHS+++L T LI+MF  + Y+  
Sbjct: 131 RTRIVKDRTVERGTSNSTYVKVNMEGVPIGRKIDLRLYHSYHTLTTTLISMF--AKYQDC 190

Query: 135 DNKCWDFTLIYEDEDGDWLLAEDLPWNSFVESVRRLKV 169
           D     +TL Y+D++GDWLLA D+PW +F+E+V RL++
Sbjct: 191 DKISERYTLTYQDKEGDWLLAGDVPWKTFIETVCRLEI 225

The following BLAST results are available for this feature:

BLAST of Carg09338-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022962174.1	1.5e-90	98.79	auxin-responsive protein IAA29-like [Cucurbita moschata]	[more]
XP_023546551.1	2.2e-89	96.97	auxin-responsive protein IAA20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022996632.1	6.9e-83	95.60	auxin-responsive protein IAA29-like [Cucurbita maxima]	[more]
XP_008445232.2	1.1e-67	75.14	PREDICTED: auxin-responsive protein IAA29-like [Cucumis melo]	[more]
XP_004138851.1	2.6e-66	74.42	PREDICTED: auxin-responsive protein IAA29-like [Cucumis sativus] >KGN62959.1 hyp...	[more]

BLAST of Carg09338-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT1G04250.1	6.5e-19	30.90	AUX/IAA transcriptional regulator family protein	[more]
AT5G65670.1	3.2e-18	37.86	indole-3-acetic acid inducible 9	[more]
AT4G32280.1	2.7e-17	46.99	indole-3-acetic acid inducible 29	[more]
AT4G28640.2	3.6e-17	34.03	indole-3-acetic acid inducible 11	[more]
AT1G04240.1	1.0e-16	37.19	AUX/IAA transcriptional regulator family protein	[more]

BLAST of Carg09338-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P13089\|AUX28_SOYBN	1.4e-18	35.95	Auxin-induced protein AUX28 OS=Glycine max OX=3847 GN=AUX28 PE=2 SV=1	[more]
sp\|P93830\|IAA17_ARATH	1.2e-17	30.90	Auxin-responsive protein IAA17 OS=Arabidopsis thaliana OX=3702 GN=IAA17 PE=1 SV=...	[more]
sp\|Q75GB1\|IAA17_ORYSJ	4.5e-17	37.70	Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17...	[more]
sp\|Q38827\|IAA9_ARATH	5.8e-17	37.86	Auxin-responsive protein IAA9 OS=Arabidopsis thaliana OX=3702 GN=IAA9 PE=1 SV=1	[more]
sp\|O24542\|AX22D_VIGRR	9.9e-17	32.69	Auxin-induced protein 22D OS=Vigna radiata var. radiata OX=3916 GN=AUX22D PE=2 S...	[more]

BLAST of Carg09338-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BCX7\|A0A1S3BCX7_CUCME	7.0e-68	75.14	Auxin-responsive protein OS=Cucumis melo OX=3656 GN=LOC103488319 PE=3 SV=1	[more]
tr\|A0A0A0LPM6\|A0A0A0LPM6_CUCSA	1.7e-66	74.42	Auxin-responsive protein OS=Cucumis sativus OX=3659 GN=Csa_2G381840 PE=3 SV=1	[more]
tr\|A0A1Q3CZV7\|A0A1Q3CZV7_CEPFO	6.0e-35	48.77	Auxin-responsive protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_29139 PE=...	[more]
tr\|A0A2P4JSW2\|A0A2P4JSW2_QUESU	4.8e-32	46.06	Auxin-responsive protein OS=Quercus suber OX=58331 GN=CFP56_10517 PE=3 SV=1	[more]
tr\|A0A1X9QDP9\|A0A1X9QDP9_CAMSI	4.8e-32	48.10	Auxin-responsive protein OS=Camellia sinensis OX=4442 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR000270	PB1_dom
IPR003311	AUX_IAA
IPR033389	AUX/IAA_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg09338	Carg09338	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg09338-RA	Carg09338-RA-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09338-RA.three_prime_UTR.1	Carg09338-RA.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09338-RA.CDS.4	Carg09338-RA.CDS.4	CDS
Carg09338-RA.CDS.3	Carg09338-RA.CDS.3	CDS
Carg09338-RA.CDS.2	Carg09338-RA.CDS.2	CDS
Carg09338-RA.CDS.1	Carg09338-RA.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09338-RA.five_prime_UTR.1	Carg09338-RA.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg09338-RA.exon.4	Carg09338-RA.exon.4	exon
Carg09338-RA.exon.3	Carg09338-RA.exon.3	exon
Carg09338-RA.exon.2	Carg09338-RA.exon.2	exon
Carg09338-RA.exon.1	Carg09338-RA.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR033389	AUX/IAA domain	PFAM	PF02309	AUX_IAA	coord: 39..169 e-value: 7.8E-34 score: 117.5
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 82..176 e-value: 1.4E-27 score: 97.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..53
None	No IPR available	PANTHER	PTHR31734:SF44	AUXIN-RESPONSIVE PROTEIN IAA29	coord: 10..170
None	No IPR available	SUPERFAMILY	SSF54277	CAD & PB1 domains	coord: 80..168
IPR003311	AUX/IAA protein	PANTHER	PTHR31734	FAMILY NOT NAMED	coord: 10..170
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 87..173 score: 23.655