CmaCh11G012650 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh11G012650
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Glycine rich protein
Location	Cma_Chr11 : 8496087 .. 8496910 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCTCAAAAAATCGATCTTTACTACACAAAAAAAATGAGCTCTAAGGCTTTTGTTTTCCTCGGCCTTCTTTTTGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCGCACACACCTCGGTCAAGAACGAAAATGGTGAGTCTCACATGATAAGATTCTATGACACTTAAAATCTTGACCGCAATGTCTAGCTTTGTTTCACTTGGAGTTAATTTTAATGATAATGTTGTAGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGACAGGGGCTACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGTGGATGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTAGTTTTTACTGTGTGTTTCTGTCTGCAAATTCCGTTTCTAAGTTATCGAACATTGTCCCCCTTTCGCCATTTCCAATGTTTATAAAATGTTCATAAGCTTGACACCGTGCCAAAATAAAATAATTGATTATCCTTACGTTTCCATCTCACTCAACCCCACTTTTATAGGTCGATAGAACGAAACCAACCAGTTAATCGATTGTTTTTCTGTTATGTATTATCGGAGAGGTTTCTATACCTTTACCCTTACACCCTTACACCCTTACGAAAGATATTTCATTTTTCTCTCTAAC

mRNA sequence

ATCTCAAAAAATCGATCTTTACTACACAAAAAAAATGAGCTCTAAGGCTTTTGTTTTCCTCGGCCTTCTTTTTGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCGCACACACCTCGGTCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGACAGGGGCTACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGTGGATGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTAGTTTTTACTGTGTGTTTCTGTCTGCAAATTCCGTTTCTAAGTTATCGAACATTGTCCCCCTTTCGCCATTTCCAATGTTTATAAAATGTTCATAAGCTTGACACCGTGCCAAAATAAAATAATTGATTATCCTTACGTTTCCATCTCACTCAACCCCACTTTTATAGGTCGATAGAACGAAACCAACCAGTTAATCGATTGTTTTTCTGTTATGTATTATCGGAGAGGTTTCTATACCTTTACCCTTACACCCTTACACCCTTACGAAAGATATTTCATTTTTCTCTCTAAC

Coding sequence (CDS)

ATGAGCTCTAAGGCTTTTGTTTTCCTCGGCCTTCTTTTTGCCTTTGTTCTCCTCATCTCTTCGAACGTGGCTGCGAGCGACCTCGCACACACCTCGGTCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGACAGGGGCTACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGCCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAA

Protein sequence

MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKYGGYDRGYRRGRYDHGGHDGHGHGGYRCRHGWCRYRCCSYAGEVVEGAKP

Homology

[Close]

BLAST of CmaCh11G012650 vs. Swiss-Prot
Match: GRP1_TOBAC (Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.3e-09
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATME-TNGVEDAKYGGYDRGYR 60
           M SKAF+FLGL  AF  LISS V A +LA TS    N   ++  NGV+    GGY+    
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETS----NPMKLDGENGVDVDGRGGYNDVGG 60

Query: 61  RGRYDHGGHDGHGHGGYR---CRHGWCR------YRCCSYAGEVVE 97
            G Y  GG  G G GGY+   CR+G CR       RCCSYAGE ++
Sbjct: 61  DGYY--GGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCSYAGEAMD 100

[Close]

BLAST of CmaCh11G012650 vs. Swiss-Prot
Match: GRP7_DAUCA (Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.4e-06
Identity = 42/93 (45.16%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKYGGYDRGYRR 60
          M SK F+ LGL  AF LLISS VAA DL+ T        T E   ++   +GG   G+  
Sbjct: 1  MGSKIFLLLGLSIAFALLISSEVAARDLSET--------TTEGASLDGGHHGGGGGGHYS 60

Query: 61 GRYDHGG--HDGHGHGGYRCRHGWCRYRCCSYA 92
          G   HGG  H G GHGG  C H +C   CCS A
Sbjct: 61 GGGGHGGSHHGGGGHGG--CHH-YCHGSCCSAA 82

[Close]

BLAST of CmaCh11G012650 vs. TrEMBL
Match: A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 75/119 (63.03%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmaCh11G012650 vs. TrEMBL
Match: A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-24
Identity = 75/119 (63.03%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmaCh11G012650 vs. TrEMBL
Match: A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-24
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmaCh11G012650 vs. TrEMBL
Match: A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.5e-13
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

[Close]

BLAST of CmaCh11G012650 vs. TrEMBL
Match: Q7Y087_PANGI (GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 60/119 (50.42%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 2   SSKAFVFLGLLFAFVLLISSNVAASDLAH----TSVKNENVATMET----NGVEDAKY-- 61
           S+KAF+ LGL  A VLLISS VAA +LA     T+ KN   AT++     NG     Y  
Sbjct: 3   SNKAFLLLGLSLAIVLLISSEVAARELAEAQTTTTNKNTEAATVDGRSGYNGYGGGGYHG 62

Query: 62  -GGYDRG--YRRGRYDHGG---HDGHGHGGYRCRHGWCRYRCCSYAGEVVE----GAKP 101
            GGY  G  Y  G   HGG   H G GHGG  C HG+CRYRCC+YAGEVV+    G KP
Sbjct: 63  GGGYHGGGGYHGGGGYHGGGGYHGGGGHGGGGCSHGYCRYRCCNYAGEVVDAETTGVKP 121

[Close]

BLAST of CmaCh11G012650 vs. NCBI nr
Match: gi|659110968|ref|XP_008455506.1| (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 125.6 bits (314), Expect = 5.0e-26
Identity = 76/118 (64.41%), Postives = 82/118 (69.49%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY-GGYDRGYR 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA T  K +N AT+ETNGVEDAKY GGYDRGY 
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  RGRYDHGGH--DGHGHGGY---------------RCRHGWCRYRCCSYAGEVVEGAKP 101
            G Y  GG+   G+G GGY                CR+G C YRCCSYAGEVVEGAKP
Sbjct: 61  GGGYGRGGYGRGGYGRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVVEGAKP 118

[Close]

BLAST of CmaCh11G012650 vs. NCBI nr
Match: gi|700188223|gb|KGN43456.1| (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-24
Identity = 75/119 (63.03%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmaCh11G012650 vs. NCBI nr
Match: gi|525507336|ref|NP_001267708.1| (glycine-rich protein-like precursor [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-24
Identity = 75/119 (63.03%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmaCh11G012650 vs. NCBI nr
Match: gi|704849882|emb|CEG62450.1| (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 6.1e-24
Identity = 74/119 (62.18%), Postives = 80/119 (67.23%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmaCh11G012650 vs. NCBI nr
Match: gi|700188222|gb|KGN43455.1| (Cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 2.2e-13
Identity = 57/86 (66.28%), Postives = 62/86 (72.09%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSVKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

The following BLAST results are available for this feature:

BLAST of CmaCh11G012650 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP1_TOBAC	4.3e-09	47.17	Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1	[more]
GRP7_DAUCA	4.4e-06	45.16	Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1	[more]

BLAST of CmaCh11G012650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6L7_CUCSA	1.5e-24	63.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1	[more]
A0P8W6_CUCSA	1.5e-24	63.03	Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1	[more]
A0A0A1IXP4_CUCSA	4.3e-24	62.18	Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1	[more]
A0A0A0K1B1_CUCSA	1.5e-13	66.28	Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1	[more]
Q7Y087_PANGI	1.7e-12	50.42	GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1	[more]

BLAST of CmaCh11G012650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh11G012650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110968\|ref\|XP_008455506.1\|	5.0e-26	64.41	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
gi\|700188223\|gb\|KGN43456.1\|	2.1e-24	63.03	hypothetical protein Csa_7G037600 [Cucumis sativus]	[more]
gi\|525507336\|ref\|NP_001267708.1\|	2.1e-24	63.03	glycine-rich protein-like precursor [Cucumis sativus]	[more]
gi\|704849882\|emb\|CEG62450.1\|	6.1e-24	62.18	Glycine rich protein [Cucumis sativus]	[more]
gi\|700188222\|gb\|KGN43455.1\|	2.2e-13	66.28	Cell wall glycine-rich protein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh11G012650.1	CmaCh11G012650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..82 score: 7.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh11G012650	CSPI07G03060	Wild cucumber (PI 183967)	cmacpiB151
CmaCh11G012650	CmoCh11G018580	Cucurbita moschata (Rifu)	cmacmoB117
CmaCh11G012650	Cp4.1LG04g03810	Cucurbita pepo (Zucchini)	cmacpeB154
CmaCh11G012650	CsaV3_7G002960	Cucumber (Chinese Long) v3	cmacucB0176
CmaCh11G012650	Carg04169	Silver-seed gourd	carcmaB0272
CmaCh11G012650	Carg18055	Silver-seed gourd	carcmaB1471

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh11G012650	Cucurbita moschata (Rifu)	cmacmoB145
CmaCh11G012650	Cucurbita pepo (Zucchini)	cmacpeB118
CmaCh11G012650	Bottle gourd (USVL1VR-Ls)	cmalsiB100
CmaCh11G012650	Cucumber (Gy14) v2	cgybcmaB899
CmaCh11G012650	Melon (DHL92) v3.6.1	cmamedB102
CmaCh11G012650	Watermelon (97103) v2	cmawmbB101
CmaCh11G012650	Wax gourd	cmawgoB0115
CmaCh11G012650	Cucurbita maxima (Rimu)	cmacmaB151