CsaV3_7G002960 (gene) Cucumber (Chinese Long) v3

NameCsaV3_7G002960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionGlycine rich protein
Locationchr7 : 2244746 .. 2245804 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CGCCTATAAATACCTCTATAAGAATGCAAATCTTTCTCATCCCTCTCTCCCAAAATCAATCTCTTACTATACACACAAATATGAGTTCCAAAGCCTTTGTTTTTCTCGGCCTTCTTCTCGCCTTTGTTCTTCTCCTATCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTCCTCCAAGACGGACAACGGTGAGTTCTATGTTATAATAAATTTTTTAAGTTATTCAAAAAGTTTTAATTCATGGTAGTCACCTATTTAGAGTTTAATATTCTTTGTCCTTGTTCCTGATAATGATTACAGAGCTAACCAAGTTGTTCAGTTTACTTAGTTTAGAGGCAAATAAGCTAACCTGAATTGAATGTTCACAAATATTAAAAAAATACTCATGTAAAATGTATAAAATATACATACTCATTATTAAACTTTTTTACATACAGATTTTGAATTTATATAACATTTTCATAAAGTTATGGATTAATTTTAAAGATAACATTGCAGAGGCCACGGTGGAAACCAATGGCGTAGAGGATGCCAAGTATGGAAGAGGAGGGTATGACAGAGGCTATGGCGGAGGGCACGACAGAGGCTATGGCGGTGGTCGTGGTGGGTATGGTCGTGGTCATTACGGTGGCCGTGGAGGCTATGGTGGTGGCCGTGGTGGCTACGGCAGAGGTTGCCGATATGGTCGATGTGGGCACAAGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGTGCAAAACCCTAAGAGAAGGTGTAGAATGGGATGAAATAATAAAAAGGTTTAAAGTTTGTGTGTTTGGTTAAATGTGTGAACGGTAGAAGTTTGAGAAATAAATAGATGGGGAATGGAAGGAGTGGGTTCTGTAGTTTTTCTTTTCCCCATGTTTGGGTTTGTTTTAGTATGTTATTTCAAACATTTGCTTTTGCAAATTTTAATTTTATAATATCACCAAACATATTTTCATTTCCTGTAATTAACGCTTTTATTTCCATAACTTGAACATAAATTTTAATAGTTAACGTATATGTTGATATTTTTGTCAACAACACCAAT

mRNA sequence

ATGCAAATCTTTCTCATCCCTCTCTCCCAAAATCAATCTCTTACTATACACACAAATATGAGTTCCAAAGCCTTTGTTTTTCTCGGCCTTCTTCTCGCCTTTGTTCTTCTCCTATCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTCCTCCAAGACGGACAACGAGGCCACGGTGGAAACCAATGGCGTAGAGGATGCCAAGTATGGAAGAGGAGGGTATGACAGAGGCTATGGCGGAGGGCACGACAGAGGCTATGGCGGTGGTCGTGGTGGGTATGGTCGTGGTCATTACGGTGGCCGTGGAGGCTATGGTGGTGGCCGTGGTGGCTACGGCAGAGGTTGCCGATATGGTCGATGTGGGCACAAGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGTGCAAAACCCTAA

Coding sequence (CDS)

ATGCAAATCTTTCTCATCCCTCTCTCCCAAAATCAATCTCTTACTATACACACAAATATGAGTTCCAAAGCCTTTGTTTTTCTCGGCCTTCTTCTCGCCTTTGTTCTTCTCCTATCGTCTGAGGTGGCCGCAAGAGACCTTGCGGAGACCTCCTCCAAGACGGACAACGAGGCCACGGTGGAAACCAATGGCGTAGAGGATGCCAAGTATGGAAGAGGAGGGTATGACAGAGGCTATGGCGGAGGGCACGACAGAGGCTATGGCGGTGGTCGTGGTGGGTATGGTCGTGGTCATTACGGTGGCCGTGGAGGCTATGGTGGTGGCCGTGGTGGCTACGGCAGAGGTTGCCGATATGGTCGATGTGGGCACAAGTGCTGCAGCTACGCTGGTGAAGTGGTAGAGGGTGCAAAACCCTAA

Protein sequence

MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGYGGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP
BLAST of CsaV3_7G002960 vs. NCBI nr
Match: KGN43456.1 (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 2.6e-37
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60
           MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV
Sbjct: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60

Query: 61  ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXKCCSYAGEVVEGAKP 139
           XXXKCCSYAGEVVEGAKP
Sbjct: 121 XXXKCCSYAGEVVEGAKP 138

BLAST of CsaV3_7G002960 vs. NCBI nr
Match: NP_001267708.1 (glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 128.6 bits (322), Expect = 1.6e-26
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 119

BLAST of CsaV3_7G002960 vs. NCBI nr
Match: CEG62450.1 (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 4.7e-26
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
           MSSKAFVFLGL LAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 119

BLAST of CsaV3_7G002960 vs. NCBI nr
Match: XP_022952571.1 (glycine-rich protein-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 105/138 (76.09%), Postives = 112/138 (81.16%), Query Frame = 0

Query: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60
           MQI LIP S   SL ++T MSSKAF+FLGLL A VLL+SSEVAARDLAETS+K +NEAT 
Sbjct: 1   MQILLIP-SSKFSLFLNTKMSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATA 60

Query: 61  ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ETNGVEDAKY  GGYD GY         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ETNGVEDAKY--GGYDGGY---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXKCCSYAGEVVEGAKP 139
              +CCSYAGEVVEGAKP
Sbjct: 121 CGYRCCSYAGEVVEGAKP 126

BLAST of CsaV3_7G002960 vs. NCBI nr
Match: XP_022952570.1 (cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 114/140 (81.43%), Postives = 121/140 (86.43%), Query Frame = 0

Query: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60
           MQI LIP S   SL ++T MSSKAF+FLGLL A VLL+SSEVAARDLAETS+K +NEAT 
Sbjct: 1   MQILLIP-SSKFSLFLNTKMSSKAFIFLGLLFALVLLISSEVAARDLAETSTKKENEATA 60

Query: 61  ETNGVEDAKYGRGGYDRGY--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ETNGVEDAKY  GGYD GY  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ETNGVEDAKY--GGYDGGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXKCCSYAGEVVEGAKP 139
           XX   +CCSYAGEVVEGAKP
Sbjct: 121 XXCGYRCCSYAGEVVEGAKP 137

BLAST of CsaV3_7G002960 vs. Swiss-Prot
Match: sp|Q09134|GRPA_MEDSF (Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subsp. falcata OX=3878 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.5e-04
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 35 VLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYD 77
          VLL+SSEV+ARDL ET+S    E   +TN V DAKYG GGY+
Sbjct: 2  VLLISSEVSARDLTETTSDAKKEVVEKTNEVNDAKYG-GGYN 42

BLAST of CsaV3_7G002960 vs. Swiss-Prot
Match: sp|P11898|GRP1_OXYRB (Glycine-rich protein HC1 OS=Oxybasis rubra OX=3560 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 20 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTD 56
          M SK F+ LGL +AF +L+SSEVAAR+LAET++KT+
Sbjct: 1  MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE 36

BLAST of CsaV3_7G002960 vs. Swiss-Prot
Match: sp|P37703|GRP9_DAUCA (Glycine-rich protein DC9.1 OS=Daucus carota OX=4039 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 23/36 (63.89%), Postives = 31/36 (86.11%), Query Frame = 0

Query: 20 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTD 56
          M SK F+ LGL +AF +L+SSEVAAR+LAET++KT+
Sbjct: 1  MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE 36

BLAST of CsaV3_7G002960 vs. TrEMBL
Match: tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60
           MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV
Sbjct: 1   MQIFLIPLSQNQSLTIHTNMSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATV 60

Query: 61  ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ETNGVEDAKYGRGGYDRGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXKCCSYAGEVVEGAKP 139
           XXXKCCSYAGEVVEGAKP
Sbjct: 121 XXXKCCSYAGEVVEGAKP 138

BLAST of CsaV3_7G002960 vs. TrEMBL
Match: tr|A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-26
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 119

BLAST of CsaV3_7G002960 vs. TrEMBL
Match: tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.1e-26
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 0

Query: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
           MSSKAFVFLGL LAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 139
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 119

BLAST of CsaV3_7G002960 vs. TrEMBL
Match: tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 3.0e-21
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0

Query: 20 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
          MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNE TVETNGVEDAKYGRGGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

BLAST of CsaV3_7G002960 vs. TrEMBL
Match: tr|A0A1S3C180|A0A1S3C180_CUCME (cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC103495657 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.6e-19
Identity = 110/119 (92.44%), Postives = 110/119 (92.44%), Query Frame = 0

Query: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79
           MSSKAFVFLGLLLAFVLLLSSEVAARDLAET SKTDNEATVETNGVEDAKYG GGYDRGY
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYG-GGYDRGY 60

Query: 80  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKCCSYAGEVVEGAKP 139
             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     AGEVVEGAKP
Sbjct: 61  GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEVVEGAKP 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN43456.12.6e-37100.00hypothetical protein Csa_7G037600 [Cucumis sativus][more]
NP_001267708.11.6e-26100.00glycine-rich protein-like precursor [Cucumis sativus] >BAF37542.1 cell wall glyc... [more]
CEG62450.14.7e-2699.16Glycine rich protein [Cucumis sativus][more]
XP_022952571.11.6e-2176.09glycine-rich protein-like isoform X2 [Cucurbita moschata][more]
XP_022952570.12.6e-2181.43cold and drought-regulated protein CORA-like isoform X1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
sp|Q09134|GRPA_MEDSF4.5e-0461.90Abscisic acid and environmental stress-inducible protein OS=Medicago sativa subs... [more]
sp|P11898|GRP1_OXYRB5.8e-0463.89Glycine-rich protein HC1 OS=Oxybasis rubra OX=3560 PE=2 SV=1[more]
sp|P37703|GRP9_DAUCA5.8e-0463.89Glycine-rich protein DC9.1 OS=Daucus carota OX=4039 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
tr|A0A0A0K6L7|A0A0A0K6L7_CUCSA1.7e-37100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037600 PE=4 SV=1[more]
tr|A0P8W6|A0P8W6_CUCSA1.1e-26100.00Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=CsGRP1 PE=2 SV=1[more]
tr|A0A0A1IXP4|A0A0A1IXP4_CUCSA3.1e-2699.16Glycine rich protein OS=Cucumis sativus OX=3659 GN=GRP PE=2 SV=1[more]
tr|A0A0A0K1B1|A0A0A0K1B1_CUCSA3.0e-2198.33Cell wall glycine-rich protein OS=Cucumis sativus OX=3659 GN=Csa_7G037590 PE=4 S... [more]
tr|A0A1S3C180|A0A1S3C180_CUCME1.6e-1992.44cold and drought-regulated protein CORA-like OS=Cucumis melo OX=3656 GN=LOC10349... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010800GRP
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G002960.1CsaV3_7G002960.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 20..112
e-value: 1.6E-18
score: 67.1
NoneNo IPR availablePANTHERPTHR37372FAMILY NOT NAMEDcoord: 20..123

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_7G002960CSPI07G03070Wild cucumber (PI 183967)cpicucB415
CsaV3_7G002960CmaCh11G012650Cucurbita maxima (Rimu)cmacucB0176
CsaV3_7G002960CmoCh11G018580Cucurbita moschata (Rifu)cmocucB0155
The following gene(s) are paralogous to this gene:

None