CmoCh11G018580 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh11G018580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glycine rich protein
Location	Cmo_Chr11 : 12943809 .. 12944645 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCTCAAAAAATCGATCTTTACTACACACAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGGTGAGTCTCACATGATAAGATTCTATGACACTTAAAATCTTGACCGTAATGTTTAGTTTAGTTTCACTTGGCGTTAATTTTAATGATGATGTTGTAGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGGTGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTGGTTTTTAGTGTGTTTCTGTTTGCAAATCCGGTTTCTATCTCGATAACTTGAGCATAGTTCAATCGGTAAAAATATCTATCTAAGTAAGCGATAATTAGCAGATATTTATTTCTTTAAAGTCAGAACGTAACCCTACCTTTGTTGATTATTTGATTTCTATCTTAATATTAGGTTAACTAAAAAAACGTTCTTTTTAGTCAAATTACTTCATATAATTTGTGTTCAATTTTACGAGAAATCCTTAAAAAGAAACCGTCTTAAAGTGAGTGACCATTTTAAATTATTGGAAGCAGGAAAGATGTCCC

mRNA sequence

CATCTCAAAAAATCGATCTTTACTACACACAAAAAAATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAAGGCATAGTGGGTGTGCTGAAATAATGAAATGGTTTAATGTTTGAGAAATAAATGCATGGGGAATGGAATGCCTCGGCTGTTCTTTCTCCGTGTTTGGTTTTTAGTGTGTTTCTGTTTGCAAATCCGGTTTCTATCTCGATAACTTGAGCATAGTTCAATCGGTAAAAATATCTATCTAAGTAAGCGATAATTAGCAGATATTTATTTCTTTAAAGTCAGAACGTAACCCTACCTTTGTTGATTATTTGATTTCTATCTTAATATTAGGTTAACTAAAAAAACGTTCTTTTTAGTCAAATTACTTCATATAATTTGTGTTCAATTTTACGAGAAATCCTTAAAAAGAAACCGTCTTAAAGTGAGTGACCATTTTAAATTATTGGAAGCAGGAAAGATGTCCC

Coding sequence (CDS)

ATGAGCTCCAAGGCTTTTGTTTTCCTCGGCCTTCTTTTCGCCTTTGTTCTCCTCATCTCTTCGAATGTGGCTGCGAGCGACCTCGCACACACCTCGGCCAAGAACGAAAATGTGGCTACAATGGAGACCAATGGCGTAGAGGATGCCAAGTATGGAGGATATGATAGGGGATACCGTCGTGGTCGCTACGATCATGGCGGCCATGATGGGCACGGTCATGGTGGCTACCGTTGCCGGCATGGTTGGTGTCGCTACCGGTGCTGCAGCTACGCCGGTGAAGTGGTGGAGGGTGCAAAGCCATAA

Homology

[Close]

BLAST of CmoCh11G018580 vs. Swiss-Prot
Match: GRP1_TOBAC (Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.6e-09
Identity = 50/106 (47.17%), Postives = 60/106 (56.60%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATME-TNGVEDAKYGGYDRGYR 60
           M SKAF+FLGL  AF  LISS V A +LA TS    N   ++  NGV+    GGY+    
Sbjct: 1   MGSKAFLFLGLCLAFFFLISSEVVAGELAETS----NPMKLDGENGVDVDGRGGYNDVGG 60

Query: 61  RGRYDHGGHDGHGHGGYR---CRHGWCR------YRCCSYAGEVVE 97
            G Y  GG  G G GGY+   CR+G CR       RCCSYAGE ++
Sbjct: 61  DGYY--GGGRGRGGGGYKRRGCRYGCCRKGYNGCKRCCSYAGEAMD 100

[Close]

BLAST of CmoCh11G018580 vs. Swiss-Prot
Match: GRP7_DAUCA (Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 5.8e-06
Identity = 42/93 (45.16%), Postives = 49/93 (52.69%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKYGGYDRGYRR 60
          M SK F+ LGL  AF LLISS VAA DL+ T        T E   ++   +GG   G+  
Sbjct: 1  MGSKIFLLLGLSIAFALLISSEVAARDLSET--------TTEGASLDGGHHGGGGGGHYS 60

Query: 61 GRYDHGG--HDGHGHGGYRCRHGWCRYRCCSYA 92
          G   HGG  H G GHGG  C H +C   CCS A
Sbjct: 61 GGGGHGGSHHGGGGHGG--CHH-YCHGSCCSAA 82

[Close]

BLAST of CmoCh11G018580 vs. TrEMBL
Match: A0A0A0K6L7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-25
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmoCh11G018580 vs. TrEMBL
Match: A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.6e-25
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580 vs. TrEMBL
Match: A0A0A1IXP4_CUCSA (Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.5e-24
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580 vs. TrEMBL
Match: A0A0A0K1B1_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 8.9e-14
Identity = 57/86 (66.28%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

[Close]

BLAST of CmoCh11G018580 vs. TrEMBL
Match: Q7Y087_PANGI (GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-12
Identity = 60/119 (50.42%), Postives = 69/119 (57.98%), Query Frame = 1


Query: 2   SSKAFVFLGLLFAFVLLISSNVAASDLAH----TSAKNENVATMET----NGVEDAKY-- 61
           S+KAF+ LGL  A VLLISS VAA +LA     T+ KN   AT++     NG     Y  
Sbjct: 3   SNKAFLLLGLSLAIVLLISSEVAARELAEAQTTTTNKNTEAATVDGRSGYNGYGGGGYHG 62

Query: 62  -GGYDRG--YRRGRYDHGG---HDGHGHGGYRCRHGWCRYRCCSYAGEVVE----GAKP 101
            GGY  G  Y  G   HGG   H G GHGG  C HG+CRYRCC+YAGEVV+    G KP
Sbjct: 63  GGGYHGGGGYHGGGGYHGGGGYHGGGGHGGGGCSHGYCRYRCCNYAGEVVDAETTGVKP 121

[Close]

BLAST of CmoCh11G018580 vs. NCBI nr
Match: gi|659110968|ref|XP_008455506.1| (PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo])

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 76/118 (64.41%), Postives = 83/118 (70.34%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY-GGYDRGYR 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA T +K +N AT+ETNGVEDAKY GGYDRGY 
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETFSKTDNEATVETNGVEDAKYGGGYDRGYG 60

Query: 61  RGRYDHGGH--DGHGHGGY---------------RCRHGWCRYRCCSYAGEVVEGAKP 101
            G Y  GG+   G+G GGY                CR+G C YRCCSYAGEVVEGAKP
Sbjct: 61  GGGYGRGGYGRGGYGRGGYGGRGGYGGGRGGYGRGCRYGRCGYRCCSYAGEVVEGAKP 118

[Close]

BLAST of CmoCh11G018580 vs. NCBI nr
Match: gi|700188223|gb|KGN43456.1| (hypothetical protein Csa_7G037600 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 20  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 79

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 80  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 138

[Close]

BLAST of CmoCh11G018580 vs. NCBI nr
Match: gi|525507336|ref|NP_001267708.1| (glycine-rich protein-like precursor [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 75/119 (63.03%), Postives = 82/119 (68.91%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580 vs. NCBI nr
Match: gi|704849882|emb|CEG62450.1| (Glycine rich protein [Cucumis sativus])

HSP 1 Score: 119.4 bits (298), Expect = 3.6e-24
Identity = 74/119 (62.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 1   MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDR-- 60
           MSSKAFVFLGL  AFVLL+SS VAA DLA TS+K +N AT+ETNGVEDAKY  GGYDR  
Sbjct: 1   MSSKAFVFLGLFLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAKYGRGGYDRGY 60

Query: 61  -------------GYRRGRYDHGGHDGHGHGGY--RCRHGWCRYRCCSYAGEVVEGAKP 101
                        GY RG Y   G  G G GGY   CR+G C ++CCSYAGEVVEGAKP
Sbjct: 61  GGGHDRGYGGGRGGYGRGHYGGRGGYGGGRGGYGRGCRYGRCGHKCCSYAGEVVEGAKP 119

[Close]

BLAST of CmoCh11G018580 vs. NCBI nr
Match: gi|700188222|gb|KGN43455.1| (Cell wall glycine-rich protein [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 57/86 (66.28%), Postives = 63/86 (73.26%), Query Frame = 1


Query: 1  MSSKAFVFLGLLFAFVLLISSNVAASDLAHTSAKNENVATMETNGVEDAKY--GGYDRGY 60
          MSSKAFVFLGLL AFVLL+SS VAA DLA TS+K +N  T+ETNGVEDAKY  GGYDRGY
Sbjct: 1  MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEVTVETNGVEDAKYGRGGYDRGY 60

Query: 61 RRGRYDH---GGHDGHGHGGYRCRHG 82
            G YD    GG+D    GGY   +G
Sbjct: 61 -GGGYDRGYGGGYDRGYGGGYDRGYG 85

The following BLAST results are available for this feature:

BLAST of CmoCh11G018580 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GRP1_TOBAC	5.6e-09	47.17	Glycine-rich protein OS=Nicotiana tabacum GN=GRP PE=2 SV=1	[more]
GRP7_DAUCA	5.8e-06	45.16	Glycine-rich protein DC7.1 OS=Daucus carota PE=2 SV=1	[more]

BLAST of CmoCh11G018580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6L7_CUCSA	8.6e-25	63.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037600 PE=4 SV=1	[more]
A0P8W6_CUCSA	8.6e-25	63.03	Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=2 SV=1	[more]
A0A0A1IXP4_CUCSA	2.5e-24	62.18	Glycine rich protein OS=Cucumis sativus GN=GRP PE=2 SV=1	[more]
A0A0A0K1B1_CUCSA	8.9e-14	66.28	Cell wall glycine-rich protein OS=Cucumis sativus GN=Csa_7G037590 PE=4 SV=1	[more]
Q7Y087_PANGI	1.7e-12	50.42	GBR5 OS=Panax ginseng GN=GBR5 PE=2 SV=1	[more]

BLAST of CmoCh11G018580 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh11G018580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110968\|ref\|XP_008455506.1\|	2.9e-26	64.41	PREDICTED: cold and drought-regulated protein CORA-like [Cucumis melo]	[more]
gi\|700188223\|gb\|KGN43456.1\|	1.2e-24	63.03	hypothetical protein Csa_7G037600 [Cucumis sativus]	[more]
gi\|525507336\|ref\|NP_001267708.1\|	1.2e-24	63.03	glycine-rich protein-like precursor [Cucumis sativus]	[more]
gi\|704849882\|emb\|CEG62450.1\|	3.6e-24	62.18	Glycine rich protein [Cucumis sativus]	[more]
gi\|700188222\|gb\|KGN43455.1\|	1.3e-13	66.28	Cell wall glycine-rich protein [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010800	GRP

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh11G018580.1	CmoCh11G018580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..82 score: 7.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh11G018580	CmaCh11G012650	Cucurbita maxima (Rimu)	cmacmoB117
CmoCh11G018580	Cp4.1LG04g03810	Cucurbita pepo (Zucchini)	cmocpeB126
CmoCh11G018580	CsaV3_7G002960	Cucumber (Chinese Long) v3	cmocucB0155
CmoCh11G018580	Carg04169	Silver-seed gourd	carcmoB0276

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh11G018580	Silver-seed gourd	carcmoB1428
CmoCh11G018580	Cucumber (Chinese Long) v3	cmocucB0114
CmoCh11G018580	Watermelon (97103) v2	cmowmbB094
CmoCh11G018580	Wax gourd	cmowgoB0116
CmoCh11G018580	Wax gourd	cmowgoB0126
CmoCh11G018580	Cucurbita moschata (Rifu)	cmocmoB108
CmoCh11G018580	Cucumber (Gy14) v1	cgycmoB0515
CmoCh11G018580	Cucurbita maxima (Rimu)	cmacmoB492
CmoCh11G018580	Wild cucumber (PI 183967)	cmocpiB103
CmoCh11G018580	Wild cucumber (PI 183967)	cmocpiB131
CmoCh11G018580	Cucumber (Chinese Long) v2	cmocuB101
CmoCh11G018580	Cucumber (Chinese Long) v2	cmocuB132
CmoCh11G018580	Melon (DHL92) v3.5.1	cmomeB090
CmoCh11G018580	Watermelon (Charleston Gray)	cmowcgB094
CmoCh11G018580	Watermelon (97103) v1	cmowmB117
CmoCh11G018580	Cucurbita pepo (Zucchini)	cmocpeB093
CmoCh11G018580	Cucurbita pepo (Zucchini)	cmocpeB100
CmoCh11G018580	Bottle gourd (USVL1VR-Ls)	cmolsiB074
CmoCh11G018580	Bottle gourd (USVL1VR-Ls)	cmolsiB080
CmoCh11G018580	Cucumber (Gy14) v2	cgybcmoB151
CmoCh11G018580	Cucumber (Gy14) v2	cgybcmoB877
CmoCh11G018580	Melon (DHL92) v3.6.1	cmomedB096